IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
686	 68.24	0	796443..797588	-	381	104780002	lldD	PSEEN0767	-	L-lactate dehydrogenase
687	 65.23	0	797652..799322	-	556	104780003	lldP	PSEEN0768	-	L-lactate permease
688	 66.41	0	799660..800427	+	255	104780004	-	PSEEN0769	-	GntR family transcriptional regulator
689	 62.94	0	800592..801074	-	160	104780005	smpB	PSEEN0770	-	SsrA-binding protein
690	 62.99	0	801236..801670	+	144	104780006	-	PSEEN0771	-	hypothetical protein
691	 66.99	0	801663..801971	+	102	104780007	-	PSEEN0772	-	hypothetical protein
692	 58.86	-1	802041..802565	-	174	104780008	omlA	PSEEN0773	-	outer membrane lipoprotein OmlA
693	 57.53	-1	802663..803067	+	134	104780009	fur	PSEEN0775	-	transcriptional repressor for ferric uptake
694	 66.01	0	803240..804913	-	557	104780010	recN	PSEEN0776	-	DNA repair protein RecN
695	 64.14	0	805095..805649	+	184	104780011	grpE	PSEEN0777	-	heat shock protein GrpE
696	 61.68	0	805751..807676	+	641	104780012	dnaK	PSEEN0778	-	molecular chaperone DnaK
697	 65.96	0	807889..809016	+	375	104780013	dnaJ	PSEEN0779	-	chaperone protein DnaJ
698	 66.42	0	809030..809833	+	267	104780014	dapB	PSEEN0780	-	dihydrodipicolinate reductase
699	 64.73	0	810183..811319	+	378	104780015	carA	PSEEN0781	-	carbamoyl phosphate synthase small subunit
700	 62.45	0	811426..814647	+	1073	104780016	carB	PSEEN0782	-	carbamoyl phosphate synthase large subunit
701	 60.87	0	814644..815126	+	160	104780017	greA	PSEEN0783	-	transcription elongation factor GreA
702	 67.80	0	815104..815544	+	146	104780018	-	PSEEN0784	-	hypothetical protein
703	 56.96	-1	815684..815992	-	102	104780019	-	PSEEN0785	-	hypothetical protein
704	 60.61	0	816095..816721	+	208	104780020	ftsJ	PSEEN0786	-	23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
705	 61.48	0	816925..818832	+	635	104780021	ftsH	PSEEN0787	-	ATP-dependent metalloprotease FtsH
706	 63.97	0	818841..819692	+	283	104780022	folP	PSEEN0788	-	dihydropteroate synthase
707	 62.49	0	819709..821049	+	446	104780023	glmM	PSEEN0789	-	phosphoglucosamine mutase
708	 56.75	-1	821116..821871	+	251	104780024	tpiA	PSEEN0790	-	triosephosphate isomerase
709	 50.38	-2	821876..822268	+	130	104780025	secG	PSEEN0792	-	preprotein translocase subunit SecG
710	 56.47	-1	822631..823140	+	169	104780026	-	PSEEN0793	-	hypothetical protein
711	 61.40	0	823201..824682	+	493	104780027	nusA	PSEEN0794	-	transcription elongation factor NusA
712	 63.53	0	824710..827262	+	850	104780028	infB	PSEEN0795	-	translation initiation factor IF-2
713	 63.66	0	827379..827777	+	132	104780029	rbfA	PSEEN0796	-	ribosome-binding factor A
714	 64.38	0	827781..828698	+	305	104780030	truB	PSEEN0797	-	tRNA pseudouridine 55 synthase
715	 58.15	-1	828847..829116	+	89	104780031	rpsO	PSEEN0798	-	30S ribosomal protein S15
716	 62.49	0	829365..831470	+	701	104780032	pnp	PSEEN0799	-	polynucleotide phosphorylase/polyadenylase
717	 59.54	-1	831847..832197	+	116	104780033	-	PSEEN0800	-	hypothetical protein
718	 65.22	0	832282..833799	-	505	104780034	-	PSEEN0801	-	xanthine/uracil permease
719	 58.54	-1	834061..834429	-	122	104780035	-	PSEEN0802	-	hypothetical protein
720	 64.88	0	834598..836664	+	688	104780036	cstA	PSEEN0803	-	carbon starvation protein CstA
721	 59.60	-1	836678..836875	+	65	104780037	-	PSEEN0804	-	hypothetical protein
722	 62.99	0	836955..837932	+	325	104780038	-	PSEEN0805	-	cobalamin synthesis protein/P47K family protein
723	 63.08	0	838204..839457	-	417	104780039	glyA	PSEEN0806	-	serine hydroxymethyltransferase
724	 65.41	0	839768..843598	-	1276	104780040	-	PSEEN0807	-	sensory box protein
725	 69.19	+1	843852..844247	+	131	104780041	-	PSEEN0809	-	hypothetical protein
726	 63.67	0	844505..846172	+	555	104780042	-	PSEEN0810	-	putative ABC transporter ATP-binding protein
727	 63.70	0	846453..847802	+	449	104780043	gdhA	PSEEN0812	-	glutamate dehydrogenase
728	 64.26	0	847938..848435	-	165	104780044	-	PSEEN0813	-	transcription elongation factor
729	 63.87	0	848505..848861	-	118	104780045	-	PSEEN0814	-	lipoprotein
730	 66.18	0	849000..850853	-	617	104780046	-	PSEEN0815	-	hypothetical protein
731	 65.03	0	850932..851420	-	162	104780047	-	PSEEN0816	-	hypothetical protein
732	 64.74	0	851676..854114	+	812	104780048	-	PSEEN0817	-	ATP-dependent protease
733	 63.72	0	854277..854615	+	112	104780049	-	PSEEN0818	-	hypothetical protein
734	 58.08	-1	854788..855276	+	162	104780050	-	PSEEN0819	-	hypothetical protein
735	 62.42	0	855435..855740	+	101	104780051	-	PSEEN0820	-	hypothetical protein
736	 66.02	0	855827..856444	+	205	104780052	fklB	PSEEN0821	-	FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)
737	 61.79	0	856520..856765	-	81	104780053	-	PSEEN0822	-	hypothetical protein
738	 60.82	0	856914..857255	-	113	104780054	phnA	PSEEN0823	-	alkylphosphonate utilization operon protein PhnA
739	 67.18	0	857422..858390	-	322	104780055	ispB	PSEEN0824	-	octaprenyl-diphosphate synthase
740	 55.24	-1	858636..858950	+	104	104780056	rplU	PSEEN0825	-	50S ribosomal protein L21
741	 55.43	-1	858988..859245	+	85	104780057	rpmA	PSEEN0826	-	50S ribosomal protein L27
742	 65.36	0	859430..860653	+	407	104780058	obgE	PSEEN0828	-	GTPase ObgE
743	 68.01	0	860741..861859	+	372	104780059	proB	PSEEN0829	-	gamma-glutamyl kinase
744	 62.44	0	861904..862329	+	141	104780060	-	PSEEN0830	-	hypothetical protein
745	 65.68	0	862444..865275	-	943	104780061	-	PSEEN0831	-	hypothetical protein
746	 64.97	0	865272..865979	-	235	104780062	-	PSEEN0832	-	hypothetical protein
747	 68.22	0	865969..867258	-	429	104780063	-	PSEEN0833	-	hypothetical protein
748	 70.57	+1	867542..868336	+	264	104780064	-	PSEEN0834	-	hypothetical protein
749	 61.62	0	868333..868788	+	151	104780065	-	PSEEN0835	-	ribosomal-protein-alanine acetyltransferase RimI
750	 64.35	0	868876..870039	-	387	104780066	-	PSEEN0836	-	hypothetical protein
751	 67.55	0	870631..871536	-	301	104780067	-	PSEEN0838	-	LysR family transcriptional regulator
752	 65.21	0	871719..872336	+	205	104780068	-	PSEEN0839	-	amino acid transporter LysE
753	 67.63	0	872576..873508	-	310	104780069	-	PSEEN0840	-	FecR-like transmembrane sensor
754	 64.44	0	873700..874914	+	404	104780070	fsr	PSEEN0841	-	major facilitator superfamily fosmidomycin/multidrug transport protein
755	 66.06	0	875396..876556	+	386	104780071	-	PSEEN0842	-	major facilitator family transporter
756	 65.23	0	876694..877320	+	208	104780072	-	PSEEN0843	-	DNA-3-methyladenine glycosylase
757	 68.84	+1	877568..878626	+	352	104780073	ada	PSEEN0845	-	O6-methylguanine-DNA methyltransferase
758	 67.29	0	878681..881083	+	800	104780074	-	PSEEN0846	-	ion mechanosensitive channel
759	 65.93	0	881141..882358	-	405	104780075	-	PSEEN0847	-	hypothetical protein
760	 69.46	+1	882532..883962	-	476	104780076	-	PSEEN0848	-	betaine-aldehyde dehydrogenase
761	 67.87	0	883976..885475	-	499	104780077	-	PSEEN0849	-	NCS1 nucleoside transporter
762	 66.41	0	885563..885952	-	129	104780078	-	PSEEN0850	-	hypothetical protein
763	 64.41	0	886288..886908	+	206	104780079	-	PSEEN0851	-	isochorismatase superfamily hydrolase
764	 68.39	0	886933..888093	-	386	104780080	-	PSEEN0852	-	major facilitator transporter
765	 60.82	0	888300..888590	-	96	104780081	-	PSEEN0853	-	hypothetical protein
766	 62.13	0	888759..889859	-	366	104780082	-	PSEEN0854	-	translation-associated GTPase
767	 63.93	0	889882..890466	-	194	104780083	pth	PSEEN0855	-	peptidyl-tRNA hydrolase
768	 58.96	-1	890546..891142	-	198	104780084	rplY	PSEEN0856	-	50S ribosomal protein L25/general stress protein Ctc
769	 59.89	0	891266..892195	-	309	104780085	prs	PSEEN0857	-	ribose-phosphate pyrophosphokinase
770	 61.32	0	892348..893208	-	286	104780086	ipk	PSEEN0858	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
771	 69.42	+1	893213..893830	-	205	104780087	lolB	PSEEN0859	-	outer membrane lipoprotein LolB
772	 67.07	0	893834..895558	-	574	104780088	-	PSEEN0860	-	hypothetical protein
773	 63.20	0	896182..896700	+	172	104780089	-	PSEEN0861	-	hemolysin co-regulated protein 1A
774	 67.33	0	896912..899932	+	1006	104780090	-	PSEEN0862	-	hypothetical protein
775	 58.57	-1	899929..904668	+	1579	104780091	-	PSEEN0863	-	hypothetical protein
776	 45.96	-2	904670..905152	+	160	104780092	-	PSEEN0864	-	hypothetical protein
777	 66.67	0	905281..905367	+	28	104780093	-	PSEEN0866	-	hypothetical protein
778	 45.36	-2	905584..905766	+	60	104780094	-	PSEEN0867	-	hypothetical protein
779	 43.92	-2	906585..907160	+	191	104780095	-	PSEEN0870	-	hypothetical protein
780	 62.38	0	908011..908919	+	302	104780096	-	PSEEN0871	-	hypothetical protein
781	 61.11	0	909624..909893	-	89	104780097	-	PSEEN0872	-	hypothetical protein
782	 62.14	0	910016..910258	-	80	104780098	-	PSEEN0873	-	hypothetical protein
783	 66.98	0	910801..912078	+	425	104780099	hemA	PSEEN0875	-	glutamyl-tRNA reductase
784	 66.02	0	912075..913157	+	360	104780100	prfA	PSEEN0876	-	peptide chain release factor 1
785	 69.68	+1	913158..913988	+	276	104780101	hemK	PSEEN0877	-	methylase of polypeptide chain release factors
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.