IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
630	 49.46	-2	726944..727495	+	183	104779946	-	PSEEN0703	-	hypothetical protein
631	 60.00	0	727726..728070	-	114	104779947	-	PSEEN0704	-	hypothetical protein
632	 64.42	0	728300..729232	-	310	104779948	-	PSEEN0705	-	phosphatidate cytidylyltransferase
633	 69.23	+1	729234..729857	-	207	104779949	-	PSEEN0706	-	acyltransferase
634	 70.24	+1	729868..730287	-	139	104779950	-	PSEEN0707	-	hypothetical protein
635	 64.12	0	730284..731618	-	444	104779951	-	PSEEN0708	-	tyrosine phosphatase
636	 68.03	0	731618..733372	-	584	104779952	-	PSEEN0709	-	lysophospholipase
637	 66.01	0	733404..734009	-	201	104779953	-	PSEEN0710	-	CDP-alcohol phosphatidyltransferase
638	 56.20	-1	734086..734343	-	85	104779954	-	PSEEN0711	-	hypothetical protein
639	 65.20	0	734463..734870	+	135	104779955	-	PSEEN0712	-	hypothetical protein
640	 61.90	0	734911..735225	-	104	104779956	-	PSEEN0713	-	hypothetical protein
641	 61.90	0	735427..736014	+	195	104779957	mdaB	PSEEN0714	-	nitroreductase or quinone reductase
642	 64.55	0	736203..737099	+	298	104779958	-	PSEEN0715	-	LysR family transcriptional regulator
643	 65.11	0	737219..738886	+	555	104779959	ggt	PSEEN0716	-	gamma-glutamyltranspeptidase
644	 66.98	0	738977..740896	-	639	104779960	-	PSEEN0717	-	methyl-accepting chemotaxis transducer
645	 68.32	0	741179..742510	+	443	104779961	-	PSEEN0718	-	DEAD-box ATP dependent DNA helicase
646	 68.39	0	742580..743854	-	424	104779962	-	PSEEN0719	-	hypothetical protein
647	 67.65	0	743971..744885	-	304	104779963	-	PSEEN0720	-	hydrolase; histone deacetylase family protein
648	 67.12	0	744980..745417	+	145	104779964	-	PSEEN0721	-	hypothetical protein
649	 67.98	0	745424..746110	-	228	104779965	-	PSEEN0722	-	hypothetical protein
650	 70.00	+1	746294..746863	+	189	104779966	-	PSEEN0723	-	acetyltransferase
651	 66.09	0	747171..748040	+	289	104779967	tesB	PSEEN0725	-	acyl-CoA thioesterase II
652	 69.20	+1	748037..748627	+	196	104779968	-	PSEEN0726	-	HAD superfamily hydrolase
653	 67.56	0	748793..749803	+	336	104779969	-	PSEEN0727	-	oxidoreductase, zinc-binding alcohol dehydrogenase
654	 63.09	0	749976..750869	-	297	104779970	-	PSEEN0728	-	acetyltransferase
655	 70.54	+1	750954..751625	-	223	104779971	-	PSEEN0729	-	GntR family transcriptional regulator
656	 66.59	0	751915..753243	+	442	104779972	-	PSEEN0730	-	major facilitator transporter
657	 67.26	0	753258..754613	+	451	104779973	gudD	PSEEN0731	-	D-glucarate dehydratase
658	 67.30	0	754793..755890	-	365	104779974	-	PSEEN0732	-	acetyltransferase
659	 61.31	0	755983..757569	+	528	104779975	-	PSEEN0734	-	ribosomal protein S6 modification protein-related protein
660	 64.01	0	757582..758598	+	338	104779976	-	PSEEN0735	-	magnesium/cobalt transporter CorA family protein
661	 65.23	0	758951..760345	+	464	104779977	gabP-3	PSEEN0737	-	amino acid permease
662	 68.31	0	760593..761384	+	263	104779978	-	PSEEN0738	-	hypothetical protein
663	 71.15	+1	761381..762697	+	438	104779979	-	PSEEN0739	-	hypothetical protein
664	 69.62	+1	762694..764790	+	698	104779980	-	PSEEN0740	-	zinc metallopeptidase M50 family
665	 69.41	+1	764881..765681	+	266	104779981	-	PSEEN0741	-	hypothetical protein
666	 66.67	0	765678..766718	+	346	104779982	-	PSEEN0742	-	hypothetical protein
667	 68.08	0	766828..767322	+	164	104779983	-	PSEEN0743	-	acetyltransferase
668	 66.67	0	767362..767643	+	93	104779984	-	PSEEN0744	-	hypothetical protein
669	 64.97	0	767719..768309	+	196	104779985	-	PSEEN0745	-	phage tail Collar
670	 68.11	0	768535..775833	+	2432	104779986	-	PSEEN0746	-	hypothetical protein
671	 67.47	0	775896..777392	+	498	104779987	-	PSEEN0747	-	efflux outer membrane protein
672	 67.95	0	777541..778008	-	155	104779988	cycC-2	PSEEN0748	-	adenosine 5'-phosphosulfate kinase
673	 68.47	0	778126..779067	-	313	104779989	-	PSEEN0749	-	hypothetical protein
674	 68.84	+1	779117..779989	-	290	104779990	-	PSEEN0750	-	LysR family transcriptional regulator
675	 66.80	0	780191..781732	+	513	104779991	-	PSEEN0751	-	major facilitator transporter
676	 52.96	-2	782281..783798	+	505	104779992	-	PSEEN0753	-	adenine specific DNA methylase
677	 50.76	-2	783801..786440	+	879	104779993	-	PSEEN0754	-	hypothetical protein
678	 54.89	-2	786604..787605	+	333	104779994	-	PSEEN0755	-	hypothetical protein
679	 42.76	-2	788128..789432	+	434	104779995	-	PSEEN0757	-	hypothetical protein
680	 49.14	-2	789573..790331	-	252	104779996	-	PSEEN0759	-	hypothetical protein
681	 66.67	0	791852..792130	-	92	104779997	-	PSEEN0762	-	hypothetical protein
682	 61.19	0	792511..792711	-	66	104779998	-	PSEEN0763	-	hypothetical protein
683	 62.92	0	792744..792983	-	79	104779999	-	PSEEN0764	-	hypothetical protein
684	 57.38	-1	792959..793195	+	78	104780000	-	PSEEN0765	-	hypothetical protein
685	 68.05	0	793561..796371	-	936	104780001	-	PSEEN0766	-	D-lactate deshydrogenase
686	 68.24	0	796443..797588	-	381	104780002	lldD	PSEEN0767	-	L-lactate dehydrogenase
687	 65.23	0	797652..799322	-	556	104780003	lldP	PSEEN0768	-	L-lactate permease
688	 66.41	0	799660..800427	+	255	104780004	-	PSEEN0769	-	GntR family transcriptional regulator
689	 62.94	0	800592..801074	-	160	104780005	smpB	PSEEN0770	-	SsrA-binding protein
690	 62.99	0	801236..801670	+	144	104780006	-	PSEEN0771	-	hypothetical protein
691	 66.99	0	801663..801971	+	102	104780007	-	PSEEN0772	-	hypothetical protein
692	 58.86	-1	802041..802565	-	174	104780008	omlA	PSEEN0773	-	outer membrane lipoprotein OmlA
693	 57.53	-1	802663..803067	+	134	104780009	fur	PSEEN0775	-	transcriptional repressor for ferric uptake
694	 66.01	0	803240..804913	-	557	104780010	recN	PSEEN0776	-	DNA repair protein RecN
695	 64.14	0	805095..805649	+	184	104780011	grpE	PSEEN0777	-	heat shock protein GrpE
696	 61.68	0	805751..807676	+	641	104780012	dnaK	PSEEN0778	-	molecular chaperone DnaK
697	 65.96	0	807889..809016	+	375	104780013	dnaJ	PSEEN0779	-	chaperone protein DnaJ
698	 66.42	0	809030..809833	+	267	104780014	dapB	PSEEN0780	-	dihydrodipicolinate reductase
699	 64.73	0	810183..811319	+	378	104780015	carA	PSEEN0781	-	carbamoyl phosphate synthase small subunit
700	 62.45	0	811426..814647	+	1073	104780016	carB	PSEEN0782	-	carbamoyl phosphate synthase large subunit
701	 60.87	0	814644..815126	+	160	104780017	greA	PSEEN0783	-	transcription elongation factor GreA
702	 67.80	0	815104..815544	+	146	104780018	-	PSEEN0784	-	hypothetical protein
703	 56.96	-1	815684..815992	-	102	104780019	-	PSEEN0785	-	hypothetical protein
704	 60.61	0	816095..816721	+	208	104780020	ftsJ	PSEEN0786	-	23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
705	 61.48	0	816925..818832	+	635	104780021	ftsH	PSEEN0787	-	ATP-dependent metalloprotease FtsH
706	 63.97	0	818841..819692	+	283	104780022	folP	PSEEN0788	-	dihydropteroate synthase
707	 62.49	0	819709..821049	+	446	104780023	glmM	PSEEN0789	-	phosphoglucosamine mutase
708	 56.75	-1	821116..821871	+	251	104780024	tpiA	PSEEN0790	-	triosephosphate isomerase
709	 50.38	-2	821876..822268	+	130	104780025	secG	PSEEN0792	-	preprotein translocase subunit SecG
710	 56.47	-1	822631..823140	+	169	104780026	-	PSEEN0793	-	hypothetical protein
711	 61.40	0	823201..824682	+	493	104780027	nusA	PSEEN0794	-	transcription elongation factor NusA
712	 63.53	0	824710..827262	+	850	104780028	infB	PSEEN0795	-	translation initiation factor IF-2
713	 63.66	0	827379..827777	+	132	104780029	rbfA	PSEEN0796	-	ribosome-binding factor A
714	 64.38	0	827781..828698	+	305	104780030	truB	PSEEN0797	-	tRNA pseudouridine 55 synthase
715	 58.15	-1	828847..829116	+	89	104780031	rpsO	PSEEN0798	-	30S ribosomal protein S15
716	 62.49	0	829365..831470	+	701	104780032	pnp	PSEEN0799	-	polynucleotide phosphorylase/polyadenylase
717	 59.54	-1	831847..832197	+	116	104780033	-	PSEEN0800	-	hypothetical protein
718	 65.22	0	832282..833799	-	505	104780034	-	PSEEN0801	-	xanthine/uracil permease
719	 58.54	-1	834061..834429	-	122	104780035	-	PSEEN0802	-	hypothetical protein
720	 64.88	0	834598..836664	+	688	104780036	cstA	PSEEN0803	-	carbon starvation protein CstA
721	 59.60	-1	836678..836875	+	65	104780037	-	PSEEN0804	-	hypothetical protein
722	 62.99	0	836955..837932	+	325	104780038	-	PSEEN0805	-	cobalamin synthesis protein/P47K family protein
723	 63.08	0	838204..839457	-	417	104780039	glyA	PSEEN0806	-	serine hydroxymethyltransferase
724	 65.41	0	839768..843598	-	1276	104780040	-	PSEEN0807	-	sensory box protein
725	 69.19	+1	843852..844247	+	131	104780041	-	PSEEN0809	-	hypothetical protein
726	 63.67	0	844505..846172	+	555	104780042	-	PSEEN0810	-	putative ABC transporter ATP-binding protein
727	 63.70	0	846453..847802	+	449	104780043	gdhA	PSEEN0812	-	glutamate dehydrogenase
728	 64.26	0	847938..848435	-	165	104780044	-	PSEEN0813	-	transcription elongation factor
729	 63.87	0	848505..848861	-	118	104780045	-	PSEEN0814	-	lipoprotein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.