IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
563	 61.60	0	634637..635761	+	374	104779879	-	PSEEN0621	-	long-chain-fatty-acid--luciferin-component ligase, acyl-protein synthase LuxE
564	 63.97	0	635763..638171	+	802	104779880	-	PSEEN0622	-	hypothetical protein
565	 62.80	0	638201..639493	+	430	104779881	-	PSEEN0623	-	AMP-dependent synthetase/ligase
566	 62.08	0	639490..640404	+	304	104779882	-	PSEEN0624	-	acetyltransferase
567	 66.81	0	640652..641350	-	232	104779883	-	PSEEN0625	-	transcriptional regulator
568	 62.31	0	641511..642038	-	175	104779884	ppa	PSEEN0626	-	inorganic pyrophosphatase
569	 67.28	0	642132..642947	-	271	104779885	-	PSEEN0627	-	zinc-dependent peptidase
570	 65.90	0	642955..643602	-	215	104779886	-	PSEEN0628	-	hypothetical protein
571	 59.69	0	643875..644333	-	152	104779887	-	PSEEN0630	-	acetyltransferase
572	 68.99	+1	644442..645260	-	272	104779888	-	PSEEN0631	-	ethanolamine ammonia-lyase small subunit
573	 66.59	0	645269..646663	-	464	104779889	eutB	PSEEN0632	-	ethanolamine ammonia-lyase, heavy chain
574	 66.05	0	646713..648161	-	482	104779890	-	PSEEN0633	-	transport protein
575	 64.43	0	648286..649806	-	506	104779891	aldB	PSEEN0634	-	NAD+ dependent aldehyde dehydrogenase
576	 66.77	0	650073..652049	+	658	104779892	-	PSEEN0635	-	sigma-54 dependent transcriptional regulator
577	 67.19	0	652116..653465	+	449	104779893	mpl	PSEEN0636	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
578	 65.87	0	653462..654091	+	209	104779894	ubiX	PSEEN0637	-	aromatic acid decarboxylase
579	 69.79	+1	654088..654375	+	95	104779895	-	PSEEN0638	-	hypothetical protein
580	 64.98	0	654463..656127	+	554	104779896	-	PSEEN0640	-	hypothetical protein
581	 64.46	0	656269..656676	-	135	104779897	-	PSEEN0641	-	response regulator
582	 61.20	0	656718..656900	-	60	104779898	-	PSEEN0642	-	hypothetical protein
583	 70.45	+1	657187..658137	+	316	104779899	-	PSEEN0645	-	Flp pilus assembly protein CpaB
584	 66.67	0	658156..659436	+	426	104779900	-	PSEEN0646	-	type II/IV secretion system protein D
585	 67.34	0	659433..660623	+	396	104779901	-	PSEEN0647	-	hypothetical protein
586	 67.78	0	660620..661876	+	418	104779902	-	PSEEN0648	-	Type II/IV secretion system protein E
587	 68.60	0	661876..662754	+	292	104779903	-	PSEEN0649	-	type II/IV secretion system membrane protein
588	 68.58	0	662757..663644	+	295	104779904	-	PSEEN0650	-	type II/IV secretion system membrane protein
589	 69.80	+1	663656..664357	+	233	104779905	-	PSEEN0651	-	hypothetical protein
590	 64.75	0	664370..664630	+	86	104779906	-	PSEEN0652	-	hypothetical protein
591	 63.73	0	664825..665574	-	249	104779907	-	PSEEN0653	-	LuxR family DNA-binding response regulator
592	 63.91	0	665720..666190	-	156	104779908	-	PSEEN0654	-	prepilin peptidase; typeII/IV secretion
593	 64.86	0	666266..666709	+	147	104779909	-	PSEEN0655	-	hypothetical protein
594	 67.72	0	666778..669342	+	854	104779910	-	PSEEN0656	-	sensory box histidine kinase
595	 67.66	0	669327..671234	-	635	104779911	-	PSEEN0657	-	hypothetical protein
596	 66.49	0	671505..672065	-	186	104779912	-	PSEEN0658	-	lipoprotein
597	 69.81	+1	672086..672721	-	211	104779913	-	PSEEN0659	-	lipoprotein
598	 67.33	0	672742..673491	-	249	104779914	-	PSEEN0660	-	methyltransferase
599	 64.71	0	673488..673793	-	101	104779915	-	PSEEN0661	-	hypothetical protein
600	 65.49	0	673891..674742	-	283	104779916	-	PSEEN0662	-	hypothetical protein
601	 70.73	+1	674745..676097	-	450	104779917	fabG	PSEEN0663	-	3-ketoacyl-(acyl-carrier-protein) reductase
602	 66.43	0	676212..677489	+	425	104779918	-	PSEEN0664	-	acetyl-CoA acetyltransferase
603	 65.26	0	677608..678387	+	259	104779919	-	PSEEN0665	-	AraC family transcriptional regulator
604	 65.95	0	678500..680446	-	648	104779920	-	PSEEN0666	-	methyl-accepting chemotaxis transducer
605	 63.95	0	680692..681096	-	134	104779921	-	PSEEN0668	-	MerE family transcriptional regulator
606	 68.96	+1	681093..683492	-	799	104779922	-	PSEEN0669	-	copper-translocating P-type ATPase
607	 65.63	0	683547..683933	-	128	104779923	-	PSEEN0670	-	hypothetical protein
608	 68.69	+1	684080..684277	+	65	104779924	-	PSEEN0671	-	copper-binding protein
609	 66.84	0	684471..685652	+	393	104779925	-	PSEEN0672	-	Bcr/CflA family multidrug resistance transporter
610	 66.67	0	686199..686909	+	236	104779926	-	PSEEN0673	-	ArsR family transcriptional regulator
611	 62.88	0	686906..687856	-	316	104779927	add	PSEEN0674	-	adenosine deaminase
612	 68.44	0	687939..689294	-	451	104779928	-	PSEEN0675	-	hydroxydechloroatrazine ethylaminohydrolase
613	 64.92	0	689415..690101	-	228	104779929	-	PSEEN0676	-	short chain dehydrogenase
614	 67.18	0	690505..691089	-	194	104779930	-	PSEEN0678	-	hypothetical protein
615	 62.44	0	691099..691761	-	220	104779931	-	PSEEN0679	-	TetR/AcrR family transcriptional regulator
616	 64.71	0	691851..692768	-	305	104779932	-	PSEEN0680	-	LysR family transcriptional regulator
617	 64.37	0	692888..694234	+	448	104779933	-	PSEEN0681	-	beta alanine--pyruvate transaminase
618	 61.85	0	694306..695799	+	497	104779934	mmsA-1	PSEEN0682	-	methylmalonate-semialdehyde dehydrogenase
619	 65.40	0	701844..705326	+	1160	104779935	recC	PSEEN0691	-	exonuclease V, gamma subunit
620	 66.53	0	705323..708994	+	1223	104779936	recB	PSEEN0692	-	exonuclease V, beta subunit
621	 69.03	+1	708991..711066	+	691	104779937	recD	PSEEN0693	-	exonuclease V, alpha subunit
622	 68.06	0	711136..711711	+	191	104779938	-	PSEEN0695	-	hypothetical protein
623	 67.54	0	711708..712970	+	420	104779939	-	PSEEN0696	-	hypothetical protein
624	 64.87	0	712974..713474	+	166	104779940	-	PSEEN0697	-	outer membrane lipoprotein
625	 63.41	0	713582..714532	-	316	104779941	-	PSEEN0698	-	LysR family transcriptional regulator
626	 65.55	0	714666..716192	+	508	104779942	mmsA-2	PSEEN0699	-	methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein
627	 66.89	0	716203..717093	+	296	104779943	mmsB	PSEEN0700	-	3-hydroxyisobutyrate dehydrogenase
628	 58.09	-1	717458..722215	+	1585	104779944	-	PSEEN0701	-	hypothetical protein
629	 56.39	-1	722257..726819	+	1520	104779945	-	PSEEN0702	-	insecticidal toxin complex protein
630	 49.46	-2	726944..727495	+	183	104779946	-	PSEEN0703	-	hypothetical protein
631	 60.00	0	727726..728070	-	114	104779947	-	PSEEN0704	-	hypothetical protein
632	 64.42	0	728300..729232	-	310	104779948	-	PSEEN0705	-	phosphatidate cytidylyltransferase
633	 69.23	+1	729234..729857	-	207	104779949	-	PSEEN0706	-	acyltransferase
634	 70.24	+1	729868..730287	-	139	104779950	-	PSEEN0707	-	hypothetical protein
635	 64.12	0	730284..731618	-	444	104779951	-	PSEEN0708	-	tyrosine phosphatase
636	 68.03	0	731618..733372	-	584	104779952	-	PSEEN0709	-	lysophospholipase
637	 66.01	0	733404..734009	-	201	104779953	-	PSEEN0710	-	CDP-alcohol phosphatidyltransferase
638	 56.20	-1	734086..734343	-	85	104779954	-	PSEEN0711	-	hypothetical protein
639	 65.20	0	734463..734870	+	135	104779955	-	PSEEN0712	-	hypothetical protein
640	 61.90	0	734911..735225	-	104	104779956	-	PSEEN0713	-	hypothetical protein
641	 61.90	0	735427..736014	+	195	104779957	mdaB	PSEEN0714	-	nitroreductase or quinone reductase
642	 64.55	0	736203..737099	+	298	104779958	-	PSEEN0715	-	LysR family transcriptional regulator
643	 65.11	0	737219..738886	+	555	104779959	ggt	PSEEN0716	-	gamma-glutamyltranspeptidase
644	 66.98	0	738977..740896	-	639	104779960	-	PSEEN0717	-	methyl-accepting chemotaxis transducer
645	 68.32	0	741179..742510	+	443	104779961	-	PSEEN0718	-	DEAD-box ATP dependent DNA helicase
646	 68.39	0	742580..743854	-	424	104779962	-	PSEEN0719	-	hypothetical protein
647	 67.65	0	743971..744885	-	304	104779963	-	PSEEN0720	-	hydrolase; histone deacetylase family protein
648	 67.12	0	744980..745417	+	145	104779964	-	PSEEN0721	-	hypothetical protein
649	 67.98	0	745424..746110	-	228	104779965	-	PSEEN0722	-	hypothetical protein
650	 70.00	+1	746294..746863	+	189	104779966	-	PSEEN0723	-	acetyltransferase
651	 66.09	0	747171..748040	+	289	104779967	tesB	PSEEN0725	-	acyl-CoA thioesterase II
652	 69.20	+1	748037..748627	+	196	104779968	-	PSEEN0726	-	HAD superfamily hydrolase
653	 67.56	0	748793..749803	+	336	104779969	-	PSEEN0727	-	oxidoreductase, zinc-binding alcohol dehydrogenase
654	 63.09	0	749976..750869	-	297	104779970	-	PSEEN0728	-	acetyltransferase
655	 70.54	+1	750954..751625	-	223	104779971	-	PSEEN0729	-	GntR family transcriptional regulator
656	 66.59	0	751915..753243	+	442	104779972	-	PSEEN0730	-	major facilitator transporter
657	 67.26	0	753258..754613	+	451	104779973	gudD	PSEEN0731	-	D-glucarate dehydratase
658	 67.30	0	754793..755890	-	365	104779974	-	PSEEN0732	-	acetyltransferase
659	 61.31	0	755983..757569	+	528	104779975	-	PSEEN0734	-	ribosomal protein S6 modification protein-related protein
660	 64.01	0	757582..758598	+	338	104779976	-	PSEEN0735	-	magnesium/cobalt transporter CorA family protein
661	 65.23	0	758951..760345	+	464	104779977	gabP-3	PSEEN0737	-	amino acid permease
662	 68.31	0	760593..761384	+	263	104779978	-	PSEEN0738	-	hypothetical protein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.