IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
422	 58.75	-1	495434..496393	+	319	104779738	-	PSEEN0471	-	biotin--protein ligase
423	 60.00	0	496383..497132	+	249	104779739	-	PSEEN0472	-	pantothenate kinase
424	 56.10	-1	497140..497565	+	141	104779740	-	PSEEN0473	-	hypothetical protein
425	 57.12	-1	498083..499276	+	397	104779741	tufB	PSEEN0475	-	elongation factor Tu
426	 56.10	-1	499451..499819	+	122	104779742	secE	PSEEN0476	-	preprotein translocase subunit SecE
427	 55.99	-1	499829..500362	+	177	104779743	nusG	PSEEN0477	-	transcription antitermination protein NusG
428	 58.33	-1	500482..500913	+	143	104779744	rplK	PSEEN0478	-	50S ribosomal protein L11
429	 57.18	-1	500913..501608	+	231	104779745	rplA	PSEEN0479	-	50S ribosomal protein L1
430	 57.49	-1	501808..502308	+	166	104779746	rplJ	PSEEN0480	-	50S ribosomal protein L10
431	 53.12	-2	502387..502755	+	122	104779747	rplL	PSEEN0481	-	50S ribosomal protein L7/L12
432	 59.70	0	502974..507047	+	1357	104779748	rpoB	PSEEN0482	-	DNA-directed RNA polymerase subunit beta
433	 60.31	0	507112..511311	+	1399	104779749	rpoC	PSEEN0483	-	DNA-directed RNA polymerase subunit beta'
434	 58.06	-1	511523..511894	+	123	104779750	rpsL	PSEEN0484	-	30S ribosomal protein S12
435	 58.17	-1	512001..512471	+	156	104779751	rpsG	PSEEN0485	-	30S ribosomal protein S7
436	 57.91	-1	512502..514649	+	715	104779752	fusA-1	PSEEN0486	-	elongation factor G
437	 57.37	-1	514677..515870	+	397	104779753	tufA	PSEEN0487	-	elongation factor Tu
438	 53.21	-2	516012..516323	+	103	104779754	rpsJ	PSEEN0489	-	30S ribosomal protein S10
439	 58.02	-1	516404..517039	+	211	104779755	rplC	PSEEN0490	-	50S ribosomal protein L3
440	 58.04	-1	517052..517654	+	200	104779756	rplD	PSEEN0491	-	50S ribosomal protein L4
441	 50.33	-2	517651..517950	+	99	104779757	rplW	PSEEN0492	-	50S ribosomal protein L23
442	 58.79	-1	517965..518789	+	274	104779758	rplB	PSEEN0493	-	50S ribosomal protein L2
443	 56.16	-1	518806..519081	+	91	104779759	rpsS	PSEEN0494	-	30S ribosomal protein S19
444	 57.66	-1	519093..519425	+	110	104779760	rplV	PSEEN0495	-	50S ribosomal protein L22
445	 56.19	-1	519439..520125	+	228	104779761	rpsC	PSEEN0496	-	30S ribosomal protein S3
446	 57.97	-1	520138..520551	+	137	104779762	rplP	PSEEN0497	-	50S ribosomal protein L16
447	 53.33	-2	520548..520742	+	64	104779763	rpmC	PSEEN0498	-	50S ribosomal protein L29
448	 54.68	-2	520745..521011	+	88	104779764	rpsQ	PSEEN0499	-	30S ribosomal protein S17
449	 56.64	-1	521035..521403	+	122	104779765	rplN	PSEEN0500	-	50S ribosomal protein L14
450	 52.70	-2	521415..521729	+	104	104779766	rplX	PSEEN0501	-	50S ribosomal protein L24
451	 56.48	-1	521750..522289	+	179	104779767	rplE	PSEEN0502	-	50S ribosomal protein L5
452	 61.11	0	522303..522608	+	101	104779768	rpsN	PSEEN0503	-	30S ribosomal protein S14
453	 57.25	-1	522818..523210	+	130	104779769	rpsH	PSEEN0504	-	30S ribosomal protein S8
454	 58.80	-1	523223..523756	+	177	104779770	rplF	PSEEN0505	-	50S ribosomal protein L6
455	 59.26	-1	523767..524117	+	116	104779771	rplR	PSEEN0506	-	50S ribosomal protein L18
456	 58.08	-1	524121..524621	+	166	104779772	rpsE	PSEEN0507	-	30S ribosomal protein S5
457	 54.24	-2	524624..524800	+	58	104779773	rpmD	PSEEN0508	-	50S ribosomal protein L30
458	 60.69	0	524804..525238	+	144	104779774	rplO	PSEEN0509	-	50S ribosomal protein L15
459	 57.58	-1	525239..526570	+	443	104779775	secY	PSEEN0510	-	preprotein translocase subunit SecY
460	 55.56	-1	526601..526717	+	38	104779776	rpmJ	PSEENCDS526601D	-	50S ribosomal protein L36
461	 55.74	-1	526849..527205	+	118	104779777	rpsM	PSEEN0511	-	30S ribosomal protein S13
462	 57.95	-1	527224..527613	+	129	104779778	rpsK	PSEEN0512	-	30S ribosomal protein S11
463	 56.68	-1	527629..528249	+	206	104779779	rpsD	PSEEN0513	-	30S ribosomal protein S4
464	 58.28	-1	528272..529273	+	333	104779780	rpoA	PSEEN0514	-	DNA-directed RNA polymerase subunit alpha
465	 59.95	0	529316..529702	+	128	104779781	rplQ	PSEEN0515	-	50S ribosomal protein L17
466	 61.67	0	529875..531314	+	479	104779782	katA	PSEEN0517	-	catalase (hydroperoxidase II)KatA
467	 58.92	-1	531477..531941	+	154	104779783	bfrA	PSEEN0518	-	bacterioferritin
468	 64.59	0	532095..534929	-	944	104779784	uvrA	PSEEN0519	-	excinuclease ABC subunit A
469	 64.01	0	535059..536453	+	464	104779785	-	PSEEN0520	-	major facilitator transporter
470	 63.72	0	536463..537005	+	180	104779786	ssb	PSEEN0521	-	single-strand DNA-binding protein
471	 66.47	0	537545..539101	+	518	104779787	-	PSEEN0522	-	hypothetical protein
472	 63.67	0	539135..539635	+	166	104779788	-	PSEEN0523	-	hypothetical protein
473	 62.25	0	539663..541135	+	490	104779789	-	PSEEN0524	-	hypothetical protein
474	 62.59	0	541145..541561	+	138	104779790	-	PSEEN0525	-	hypothetical protein
475	 66.22	0	541647..543434	+	595	104779791	-	PSEEN0526	-	hypothetical protein
476	 66.57	0	543398..544405	+	335	104779792	-	PSEEN0527	-	hypothetical protein
477	 69.38	+1	544418..547036	+	872	104779793	-	PSEEN0528	-	ClpA/B-type protease
478	 68.84	+1	547047..548567	+	506	104779794	-	PSEEN0529	-	sigma-54 dependent transcriptional regulator
479	 63.12	0	548651..548791	+	46	104779795	-	PSEEN0530	-	hypothetical protein
480	 68.70	+1	548810..549991	+	393	104779796	-	PSEEN0531	-	hypothetical protein
481	 67.46	0	549997..550503	+	168	104779797	-	PSEEN0532	-	hypothetical protein
482	 64.94	0	550500..551831	+	443	104779798	-	PSEEN0533	-	hypothetical protein
483	 66.67	0	551834..552703	+	289	104779799	-	PSEEN0534	-	hypothetical protein
484	 67.15	0	552718..556245	+	1175	104779800	-	PSEEN0535	-	hypothetical protein
485	 69.55	+1	556245..556973	+	242	104779801	stp1	PSEEN0536	-	Serine/threonine phosphoprotein phosphatase Stp1
486	 70.25	+1	556970..558028	+	352	104779802	stk1	PSEEN0537	-	Serine-threonine kinase Stk1
487	 62.04	0	558507..559025	+	172	104779803	-	PSEEN0539	-	hemolysin co-regulated protein 1B
488	 68.22	0	559133..562153	+	1006	104779804	-	PSEEN0540	-	hypothetical protein
489	 61.11	0	562150..566832	+	1560	104779805	-	PSEEN0541	-	hypothetical protein
490	 44.01	-2	566835..567218	+	127	104779806	-	PSEEN0542	-	hypothetical protein
491	 48.11	-2	567371..567952	+	193	104779807	-	PSEEN0543	-	hypothetical protein
492	 44.54	-2	568256..568594	+	112	104779808	-	PSEEN0544	-	hypothetical protein
493	 52.17	-2	569056..569538	+	160	104779809	-	PSEEN0545	-	hypothetical protein
494	 53.62	-2	569657..570001	+	114	104779810	-	PSEEN0546	-	hypothetical protein
495	 48.72	-2	570527..570955	+	142	104779811	-	PSEEN0548	-	hypothetical protein
496	 46.93	-2	571206..571580	+	124	104779812	-	PSEEN0550	-	hypothetical protein
497	 44.81	-2	571669..571938	+	89	104779813	-	PSEEN0551	-	hypothetical protein
498	 56.33	-1	571974..572747	+	257	104779814	-	PSEEN0552	-	hypothetical protein
499	 60.54	0	572753..573274	+	173	104779815	-	PSEEN0553	-	hypothetical protein
500	 61.31	0	573328..573663	+	111	104779816	-	PSEEN0554	-	hypothetical protein
501	 57.01	-1	573783..574103	+	106	104779817	-	PSEEN0556	-	hypothetical protein
502	 56.94	-1	574109..574540	+	143	104779818	-	PSEEN0557	-	hypothetical protein
503	 56.51	-1	574573..575025	+	150	104779819	-	PSEEN0558	-	hypothetical protein
504	 63.07	0	575114..575752	+	212	104779820	-	PSEEN0559	-	hypothetical protein
505	 62.88	0	575865..576128	+	87	104779821	-	PSEEN0560	-	hypothetical protein
506	 51.17	-2	576248..576460	-	70	104779822	-	PSEEN0562	-	hypothetical protein
507	 64.81	0	576748..577338	+	196	104779823	fdoG	PSEEN0563	-	formate dehydrogenase-O, major subunit
508	 65.21	0	577351..579816	+	821	104779824	fdnG	PSEEN0564	-	formate dehydrogenase-N major subunit, anaerobic; selenopeptide
509	 66.14	0	579816..580766	+	316	104779825	fdnH	PSEEN0565	-	formate dehydrogenase-O, Fe-S subunit
510	 62.40	0	580763..581419	+	218	104779826	fdnI	PSEEN0566	-	formate dehydrogenase-O, cytochrome B556 (FDO) subunit
511	 67.64	0	581424..582350	+	308	104779827	fdhE	PSEEN0567	-	formate dehydrogenase formation protein
512	 69.05	+1	582496..583923	+	475	104779828	selA	PSEEN0568	-	selenocysteine synthase
513	 67.29	0	583920..585842	+	640	104779829	selB	PSEEN0569	-	selenocysteinyl-tRNA-specific translation factor
514	 68.18	0	586063..587052	-	329	104779830	-	PSEEN0570	-	L-asparaginase, type I
515	 64.52	0	587213..588655	-	480	104779831	-	PSEEN0571	-	Sodium/alanine symporter
516	 60.64	0	588836..589648	+	270	104779832	-	PSEEN0572	-	Cro/CI family transcriptional regulator
517	 68.70	+1	589751..590587	-	278	104779833	-	PSEEN0573	-	hypothetical protein
518	 67.91	0	590758..591642	+	294	104779834	-	PSEEN0574	-	dTDP-4-rhamnose reductase-related protein
519	 66.56	0	591635..592567	+	310	104779835	-	PSEEN0575	-	NAD-dependent epimerase/dehydratase family protein
520	 62.59	0	592661..593101	-	146	104779836	-	PSEEN0576	-	hypothetical protein
521	 68.16	0	593203..594411	+	402	104779837	-	PSEEN0577	-	major facilitator transporter
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.