IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4182	 63.01	0	4845482..4846876	-	464	104783498	-	PSEEN4531	-	PhoH family protein
4183	 65.68	0	4847403..4848521	-	372	104783499	-	PSEEN4533	-	polysaccharide deacetylase family protein
4184	 63.84	0	4848658..4849434	+	258	104783500	-	PSEEN4534	-	hypothetical protein
4185	 64.01	0	4850242..4851558	+	438	104783501	algD	PSEEN4535	-	GDP-mannose 6-dehydrogenase
4186	 63.35	0	4851692..4853110	+	472	104783502	alg8	PSEEN4536	-	glycosyl transferase Alg8
4187	 66.32	0	4853147..4854313	+	388	104783503	alg44	PSEEN4537	-	alginate biosynthesis protein Alg44
4188	 68.64	+1	4854326..4855897	+	523	104783504	algK	PSEEN4538	-	alginate biosynthesis precursor AlgK
4189	 68.42	0	4855894..4857372	+	492	104783505	algE	PSEEN4539	-	outer membrane protein AlgE
4190	 63.84	0	4857390..4858946	+	518	104783506	algG	PSEEN4540	-	alginate-C5-mannuronan-epimerase AlgG
4191	 65.00	0	4858960..4860402	+	480	104783507	algX	PSEEN4541	-	alginate biosynthesis protein AlgX
4192	 66.58	0	4860410..4861513	+	367	104783508	algL	PSEEN4542	-	poly(beta-D-mannuronate) lyase
4193	 63.72	0	4861693..4863150	+	485	104783509	algI	PSEEN4543	-	alginate O-acetylation protein AlgI
4194	 66.41	0	4863161..4864318	+	385	104783510	algJ	PSEEN4544	-	alginate O-acetylation protein AlgJ precursor
4195	 66.98	0	4864339..4864986	+	215	104783511	algF	PSEEN4545	-	alginate O-acetyltransferase AlgF
4196	 64.33	0	4865021..4866475	+	484	104783512	algA	PSEEN4546	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase AlgA
4197	 68.17	0	4866651..4867115	+	154	104783513	-	PSEEN4547	-	hypothetical protein
4198	 40.77	-2	4867198..4867641	-	147	104783514	-	PSEEN4548	-	hypothetical protein
4199	 48.81	-2	4867812..4867979	+	55	104783515	-	PSEEN4549	-	hypothetical protein
4200	 46.71	-2	4867969..4868424	-	151	104783516	-	PSEEN4550	-	hypothetical protein
4201	 67.53	0	4868634..4869446	+	270	104783517	-	PSEEN4551	-	short chain dehydrogenase
4202	 68.31	0	4869553..4871010	-	485	104783518	-	PSEEN4552	-	multidrug efflux MFS outer membrane protein
4203	 68.83	+1	4871127..4872188	-	353	104783519	-	PSEEN4553	-	multidrug efflux MFS membrane fusion protein
4204	 68.61	0	4872217..4873758	-	513	104783520	-	PSEEN4554	-	multidrug efflux MFS transporter
4205	 68.21	0	4874038..4874943	-	301	104783521	-	PSEEN4555	-	LysR family transcriptional regulator
4206	 67.98	0	4875110..4875565	+	151	104783522	-	PSEEN4556	-	universal stress protein
4207	 63.76	0	4875679..4876539	-	286	104783523	-	PSEEN4557	-	HlyD family secretion protein
4208	 63.68	0	4876550..4876750	-	66	104783524	-	PSEEN4558	-	hypothetical protein
4209	 68.01	0	4876755..4878917	-	720	104783525	-	PSEEN4559	-	fusaric acid resistance protein
4210	 69.22	+1	4878929..4880455	-	508	104783526	-	PSEEN4560	-	fusaric acid resistance protein
4211	 65.40	0	4880636..4881583	+	315	104783527	-	PSEEN4561	-	LysR family transcriptional regulator
4212	 67.59	0	4881806..4882780	+	324	104783528	-	PSEEN4562	-	D-isomer specific 2-hydroxyacid dehydrogenase
4213	 65.56	0	4883011..4883910	-	299	104783529	-	PSEEN4563	-	hypothetical protein
4214	 68.84	+1	4884141..4885016	+	291	104783530	-	PSEEN4564	-	AraC family transcriptional regulator
4215	 65.91	0	4885131..4887524	-	797	104783531	-	PSEEN4565	-	TonB-dependent siderophore receptor
4216	 69.34	+1	4887791..4888762	-	323	104783532	-	PSEEN4566	-	FecR-like transmembrane sensor
4217	 68.32	0	4888759..4889241	-	160	104783533	-	PSEEN4567	-	ECF subfamily RNA polymerase sigma factor
4218	 66.97	0	4889336..4889662	-	108	104783534	-	PSEEN4568	-	hypothetical protein
4219	 67.63	0	4889662..4891224	-	520	104783535	-	PSEEN4569	-	hypothetical protein
4220	 67.32	0	4891221..4891526	-	101	104783536	-	PSEEN4570	-	hypothetical protein
4221	 69.70	+1	4891792..4892286	+	164	104783537	-	PSEEN4571	-	RNA polymerase sigma factor
4222	 69.78	+1	4892283..4893212	+	309	104783538	-	PSEEN4572	-	FecR-like transmembrane sensor
4223	 67.49	0	4893417..4895726	+	769	104783539	fecA	PSEEN4573	-	Fe(III) dicitrate transport protein FecA
4224	 63.79	0	4896218..4896460	+	80	104783540	-	PSEEN4574	-	hypothetical protein
4225	 61.11	0	4896584..4896853	+	89	104783541	-	PSEEN4575	-	hypothetical protein
4226	 59.73	0	4896934..4897524	-	196	104783542	-	PSEEN4576	-	hypothetical protein
4227	 57.72	-1	4897591..4897713	-	40	104783543	-	PSEEN4577	-	hypothetical protein
4228	 58.49	-1	4897889..4898353	-	154	104783544	-	PSEEN4578	-	hypothetical protein
4229	 55.56	-1	4898472..4898723	-	83	104783545	-	PSEEN4579	-	hypothetical protein
4230	 50.65	-2	4898763..4899224	-	153	104783546	-	PSEEN4580	-	hypothetical protein
4231	 46.88	-2	4899262..4899741	-	159	104783547	-	PSEEN4581	-	hypothetical protein
4232	 49.66	-2	4899858..4900292	-	144	104783548	-	PSEEN4582	-	hypothetical protein
4233	 43.21	-2	4900225..4900386	-	53	104783549	-	PSEEN4583	-	hypothetical protein
4234	 45.86	-2	4900557..4901027	-	156	104783550	-	PSEEN4584	-	hypothetical protein
4235	 36.63	-2	4901104..4901406	-	100	104783551	-	PSEEN4585	-	hypothetical protein
4236	 42.86	-2	4901614..4901718	-	34	104783552	-	PSEEN4587	-	hypothetical protein
4237	 37.54	-2	4901765..4902073	-	102	104783553	-	PSEEN4588	-	hypothetical protein
4238	 38.79	-2	4902931..4903260	-	109	104783554	-	PSEEN4591	-	hypothetical protein
4239	 39.58	-2	4903702..4904037	-	111	104783555	-	PSEEN4592	-	hypothetical protein
4240	 39.09	-2	4904313..4904642	-	109	104783556	-	PSEEN4593	-	hypothetical protein
4241	 40.61	-2	4904635..4904964	-	109	104783557	-	PSEEN4594	-	hypothetical protein
4242	 42.76	-2	4905265..4905561	-	98	104783558	-	PSEEN4595	-	hypothetical protein
4243	 61.87	0	4905572..4910245	-	1557	104783559	-	PSEEN4596	-	hypothetical protein
4244	 67.74	0	4910311..4913298	-	995	104783560	-	PSEEN4597	-	hypothetical protein
4245	 63.39	0	4913559..4914077	-	172	104783561	-	PSEEN4598	-	hemolysin co-regulated protein 1C
4246	 64.08	0	4914571..4914918	+	115	104783562	-	PSEEN4601	-	hypothetical protein
4247	 68.06	0	4915049..4915336	+	95	104783563	-	PSEEN4602	-	hypothetical protein
4248	 63.06	0	4915340..4915810	-	156	104783564	-	PSEEN4603	-	hypothetical protein
4249	 62.88	0	4916054..4916317	+	87	104783565	-	PSEEN4605	-	hypothetical protein
4250	 65.78	0	4916358..4917377	-	339	104783566	-	PSEEN4606	-	leucine dehydrogenase
4251	 69.52	+1	4917501..4918307	+	268	104783567	-	PSEEN4608	-	hypothetical protein
4252	 65.48	0	4918296..4919645	-	449	104783568	-	PSEEN4609	-	MFS transporter
4253	 65.40	0	4919836..4920465	-	209	104783569	maiA	PSEEN4610	-	maleylacetoacetate isomerase
4254	 69.22	+1	4920478..4921770	-	430	104783570	fah	PSEEN4611	-	fumarylacetoacetase
4255	 66.82	0	4921774..4923075	-	433	104783571	hmgA	PSEEN4612	-	homogentisate 1,2-dioxygenase
4256	 67.70	0	4923265..4924041	+	258	104783572	-	PSEEN4613	-	IclR family transcriptional regulator
4257	 59.60	-1	4924038..4927205	-	1055	104783573	-	PSEEN4614	-	hypothetical protein
4258	 65.79	0	4927726..4928640	-	304	104783574	-	PSEEN4615	-	short chain dehydrogenase/reductase family oxidoreductase
4259	 64.46	0	4928756..4929661	-	301	104783575	-	PSEEN4616	-	alpha/beta fold family hydrolase
4260	 70.45	+1	4929841..4930527	-	228	104783576	-	PSEEN4617	-	effector of murein hydrolase LgrB
4261	 64.86	0	4930517..4930903	-	128	104783577	-	PSEEN4618	-	murein hydrolase transporter LgrA
4262	 65.98	0	4931003..4931881	+	292	104783578	-	PSEEN4619	-	LysR family transcriptional regulator
4263	 66.23	0	4931992..4932447	-	151	104783579	-	PSEEN4620	-	flavodoxin
4264	 65.06	0	4932643..4933266	+	207	104783580	-	PSEEN4621	-	hypothetical protein
4265	 68.42	0	4933417..4933986	+	189	104783581	-	PSEEN4622	-	hypothetical protein
4266	 65.51	0	4934064..4934756	+	230	104783582	-	PSEEN4623	-	short chain dehydrogenase
4267	 61.62	0	4934766..4935062	+	98	104783583	-	PSEEN4624	-	hypothetical protein
4268	 66.96	0	4935055..4935396	+	113	104783584	-	PSEEN4625	-	type III effector HopPmaJ
4269	 68.10	0	4935492..4936397	-	301	104783585	-	PSEEN4626	-	alpha/beta fold family hydrolase
4270	 63.12	0	4936538..4937779	-	413	104783586	-	PSEEN4627	-	trans-2-enoyl-CoA reductase
4271	 65.62	0	4938043..4938900	-	285	104783587	-	PSEEN4628	-	LysR family transcriptional regulator
4272	 69.43	+1	4939035..4940084	+	349	104783588	-	PSEEN4629	-	peptidylarginine deiminase
4273	 68.90	+1	4940081..4940977	+	298	104783589	-	PSEEN4630	-	carbon-nitrogen hydrolase
4274	 66.76	0	4940981..4942075	+	364	104783590	-	PSEEN4631	-	periplasmic polyamine-binding protein
4275	 66.04	0	4942080..4943204	+	374	104783591	-	PSEEN4632	-	peptidylarginine deiminase
4276	 66.85	0	4943289..4943822	-	177	104783592	-	PSEEN4633	-	cytochrome b561 family protein
4277	 60.07	0	4943819..4944091	-	90	104783593	-	PSEEN4634	-	hypothetical protein
4278	 68.55	0	4944268..4945491	+	407	104783594	phbA	PSEEN4635	-	acetyl-CoA acetyltransferase
4279	 65.82	0	4945624..4946331	-	235	104783595	-	PSEEN4636	-	short chain dehydrogenase/reductase family oxidoreductase
4280	 66.67	0	4946408..4947361	+	317	104783596	-	PSEEN4637	-	bile acid/Na+ symporter family protein
4281	 67.05	0	4947518..4948042	-	174	104783597	-	PSEEN4638	-	hypothetical protein
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.