IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4117	 61.71	0	4775422..4776429	-	335	104783433	-	PSEEN4464	-	hypothetical protein
4118	 68.64	+1	4776582..4776935	+	117	104783434	-	PSEEN4465	-	methylated DNA-protein cysteine methyltransferase
4119	 65.25	0	4776979..4778526	+	515	104783435	ampG	PSEEN4466	-	muropeptide permease AmpG
4120	 65.78	0	4778668..4779912	-	414	104783436	-	PSEEN4467	-	multidrug efflux MFS transporter
4121	 62.86	0	4780120..4780959	-	279	104783437	-	PSEEN4468	-	ion small-conductance mechanosensitive channel
4122	 59.05	-1	4781074..4781559	-	161	104783438	-	PSEEN4469	-	nucleotide-binding protein
4123	 68.52	0	4781659..4782576	+	305	104783439	panE	PSEEN4470	-	2-dehydropantoate 2-reductase
4124	 65.48	0	4782614..4784635	+	673	104783440	-	PSEEN4472	-	sensory box histidine kinase/response regulator (hybrid)
4125	 65.08	0	4784637..4785203	+	188	104783441	-	PSEEN4473	-	Cob(I)yrinic acid a,c-diamide adenosyltransferase
4126	 66.46	0	4785280..4786224	-	314	104783442	-	PSEEN4474	-	hypothetical protein
4127	 65.88	0	4786221..4786853	-	210	104783443	-	PSEEN4475	-	glutathione S-transferase
4128	 66.26	0	4786974..4788191	-	405	104783444	argJ	PSEEN4476	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
4129	 62.03	0	4788359..4791097	-	912	162139698	secA	PSEEN4477	-	preprotein translocase subunit SecA
4130	 65.87	0	4791311..4791937	+	208	104783446	-	PSEEN4478	-	hypothetical protein
4131	 59.98	0	4792096..4793007	-	303	104783447	lpxC	PSEEN4479	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
4132	 65.33	0	4793120..4794316	-	398	104783448	ftsZ	PSEEN4480	-	cell division protein FtsZ
4133	 65.95	0	4794372..4795634	-	420	104783449	ftsA	PSEEN4481	-	cell division protein FtsA
4134	 64.71	0	4795649..4796518	-	289	104783450	ftsQ	PSEEN4482	-	cell division protein FtsQ
4135	 65.10	0	4796524..4797480	-	318	104783451	ddl	PSEEN4483	-	D-alanine--D-alanine ligase
4136	 65.49	0	4797477..4798925	-	482	104783452	murC	PSEEN4484	-	UDP-N-acetylmuramate--L-alanine ligase
4137	 67.22	0	4798918..4799997	-	359	104783453	murG	PSEEN4485	-	N-acetylglucosaminyl transferase
4138	 64.20	0	4799987..4801201	-	404	104783454	ftsW	PSEEN4486	-	cell division protein, stabililzes FtsZ ring
4139	 66.74	0	4801198..4802544	-	448	104783455	murD	PSEEN4487	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
4140	 63.99	0	4802551..4803633	-	360	104783456	mraY	PSEEN4488	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
4141	 64.99	0	4803633..4805000	-	455	104783457	murF	PSEEN4489	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme)
4142	 65.92	0	4804993..4806456	-	487	104783458	murE	PSEEN4490	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
4143	 64.76	0	4806456..4808189	-	577	104783459	ftsI	PSEEN4491	-	penicillin-binding protein
4144	 61.56	0	4808186..4808479	-	97	104783460	ftsL	PSEEN4492	-	cell division protein FtsL
4145	 63.29	0	4808476..4809423	-	315	104783461	mraW	PSEEN4493	-	S-adenosyl-methyltransferase MraW
4146	 60.96	0	4809420..4809875	-	151	104783462	-	PSEEN4494	-	cell division protein MraZ
4147	 63.19	0	4810767..4811657	-	296	104783463	-	PSEEN4495	-	hypothetical protein
4148	 67.77	0	4811830..4813647	+	605	104783464	-	PSEEN4496	-	lipoprotein LppC
4149	 63.44	0	4813647..4814018	+	123	104783465	-	PSEEN4497	-	hypothetical protein
4150	 63.97	0	4814106..4814699	+	197	104783466	gmhA	PSEEN4498	-	phosphoheptose isomerase
4151	 60.45	0	4814696..4815274	+	192	104783467	-	PSEEN4499	-	lipoprotein
4152	 63.01	0	4815325..4815543	+	72	104783468	-	PSEEN4500	-	hypothetical protein
4153	 63.45	0	4815592..4816026	-	144	104783469	sspB	PSEEN4501	-	ClpXP protease specificity-enhancing factor
4154	 62.02	0	4816042..4816665	-	207	104783470	sspA	PSEEN4502	-	stringent starvation protein A
4155	 59.62	0	4816783..4817562	-	259	104783471	petC	PSEEN4503	-	ubiquinol--cytochrome c reductase, cytochrome c1
4156	 60.48	0	4817562..4818773	-	403	104783472	petB	PSEEN4504	-	ubiquinol--cytochrome c reductase, cytochrome b
4157	 63.30	0	4818773..4819366	-	197	104783473	petA	PSEEN4505	-	ubiquinol--cytochrome c reductase, iron-sulfur subunit
4158	 60.31	0	4819629..4820021	-	130	104783474	rpsI	PSEEN4506	-	30S ribosomal protein S9
4159	 55.71	-1	4820036..4820464	-	142	104783475	rplM	PSEEN4507	-	50S ribosomal protein L13
4160	 65.32	0	4820722..4821762	+	346	104783476	-	PSEEN4508	-	aldo/keto reductase family oxidoreductase
4161	 63.55	0	4821930..4822925	+	331	104783477	-	PSEEN4509	-	AraC family transcriptional regulator
4162	 61.10	0	4823057..4824151	-	364	104783478	-	PSEEN4510	-	ATPase
4163	 66.30	0	4824378..4825727	-	449	104783479	trpS	PSEEN4511	-	tryptophanyl-tRNA synthetase
4164	 65.72	0	4825753..4826388	-	211	104783480	-	PSEEN4512	-	hypothetical protein
4165	 66.21	0	4826524..4826961	+	145	104783481	-	PSEEN4513	-	hypothetical protein
4166	 63.77	0	4827421..4830111	-	896	104783482	mdeB	PSEEN4514	-	2-oxoacid dehydrogenase subunit E1
4167	 65.00	0	4830136..4831332	-	398	104783483	mdeA	PSEEN4515	-	methionine gamma-lyase
4168	 60.83	0	4831460..4831939	+	159	104783484	-	PSEEN4516	-	AsnC family transcriptional regulator
4169	 64.46	0	4832082..4833983	-	633	104783485	cysNC	PSEEN4517	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
4170	 61.22	0	4834000..4834917	-	305	104783486	cysD	PSEEN4518	-	sulfate adenylyltransferase subunit 2
4171	 67.46	0	4835141..4835899	-	252	104783487	-	PSEEN4520	-	hypothetical protein
4172	 65.55	0	4836137..4837297	+	386	104783488	algW	PSEEN4521	-	HtrA-like serine protease AlgW
4173	 61.83	0	4837369..4838133	-	254	104783489	aapP	PSEEN4522	-	general amino acid ABC transporter, ATP-binding protein
4174	 65.03	0	4838144..4839241	-	365	104783490	aapM	PSEEN4523	-	general amino acid ABC transporter, permease protein
4175	 62.68	0	4839252..4840430	-	392	104783491	aapQ	PSEEN4524	-	general amino acid ABC transporter, permease protein
4176	 63.85	0	4840498..4841526	-	342	104783492	aapJ	PSEEN4525	-	general amino acid ABC transporter, periplasmic binding protein
4177	 64.84	0	4841863..4842519	+	218	104783493	estB	PSEEN4526	-	carboxylesterase
4178	 65.78	0	4842612..4844078	+	488	104783494	rhlB	PSEEN4527	-	ATP-dependent RNA helicase RhlB
4179	 62.64	0	4844187..4844633	-	148	104783495	moaE	PSEEN4528	-	molybdenum cofactor biosynthesis protein E
4180	 63.41	0	4844636..4844881	-	81	104783496	moaD	PSEEN4529	-	molybdenum cofactor biosynthesis protein D
4181	 65.18	0	4844881..4845351	-	156	104783497	moaC	PSEEN4530	-	molybdenum cofactor biosynthesis protein C
4182	 63.01	0	4845482..4846876	-	464	104783498	-	PSEEN4531	-	PhoH family protein
4183	 65.68	0	4847403..4848521	-	372	104783499	-	PSEEN4533	-	polysaccharide deacetylase family protein
4184	 63.84	0	4848658..4849434	+	258	104783500	-	PSEEN4534	-	hypothetical protein
4185	 64.01	0	4850242..4851558	+	438	104783501	algD	PSEEN4535	-	GDP-mannose 6-dehydrogenase
4186	 63.35	0	4851692..4853110	+	472	104783502	alg8	PSEEN4536	-	glycosyl transferase Alg8
4187	 66.32	0	4853147..4854313	+	388	104783503	alg44	PSEEN4537	-	alginate biosynthesis protein Alg44
4188	 68.64	+1	4854326..4855897	+	523	104783504	algK	PSEEN4538	-	alginate biosynthesis precursor AlgK
4189	 68.42	0	4855894..4857372	+	492	104783505	algE	PSEEN4539	-	outer membrane protein AlgE
4190	 63.84	0	4857390..4858946	+	518	104783506	algG	PSEEN4540	-	alginate-C5-mannuronan-epimerase AlgG
4191	 65.00	0	4858960..4860402	+	480	104783507	algX	PSEEN4541	-	alginate biosynthesis protein AlgX
4192	 66.58	0	4860410..4861513	+	367	104783508	algL	PSEEN4542	-	poly(beta-D-mannuronate) lyase
4193	 63.72	0	4861693..4863150	+	485	104783509	algI	PSEEN4543	-	alginate O-acetylation protein AlgI
4194	 66.41	0	4863161..4864318	+	385	104783510	algJ	PSEEN4544	-	alginate O-acetylation protein AlgJ precursor
4195	 66.98	0	4864339..4864986	+	215	104783511	algF	PSEEN4545	-	alginate O-acetyltransferase AlgF
4196	 64.33	0	4865021..4866475	+	484	104783512	algA	PSEEN4546	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase AlgA
4197	 68.17	0	4866651..4867115	+	154	104783513	-	PSEEN4547	-	hypothetical protein
4198	 40.77	-2	4867198..4867641	-	147	104783514	-	PSEEN4548	-	hypothetical protein
4199	 48.81	-2	4867812..4867979	+	55	104783515	-	PSEEN4549	-	hypothetical protein
4200	 46.71	-2	4867969..4868424	-	151	104783516	-	PSEEN4550	-	hypothetical protein
4201	 67.53	0	4868634..4869446	+	270	104783517	-	PSEEN4551	-	short chain dehydrogenase
4202	 68.31	0	4869553..4871010	-	485	104783518	-	PSEEN4552	-	multidrug efflux MFS outer membrane protein
4203	 68.83	+1	4871127..4872188	-	353	104783519	-	PSEEN4553	-	multidrug efflux MFS membrane fusion protein
4204	 68.61	0	4872217..4873758	-	513	104783520	-	PSEEN4554	-	multidrug efflux MFS transporter
4205	 68.21	0	4874038..4874943	-	301	104783521	-	PSEEN4555	-	LysR family transcriptional regulator
4206	 67.98	0	4875110..4875565	+	151	104783522	-	PSEEN4556	-	universal stress protein
4207	 63.76	0	4875679..4876539	-	286	104783523	-	PSEEN4557	-	HlyD family secretion protein
4208	 63.68	0	4876550..4876750	-	66	104783524	-	PSEEN4558	-	hypothetical protein
4209	 68.01	0	4876755..4878917	-	720	104783525	-	PSEEN4559	-	fusaric acid resistance protein
4210	 69.22	+1	4878929..4880455	-	508	104783526	-	PSEEN4560	-	fusaric acid resistance protein
4211	 65.40	0	4880636..4881583	+	315	104783527	-	PSEEN4561	-	LysR family transcriptional regulator
4212	 67.59	0	4881806..4882780	+	324	104783528	-	PSEEN4562	-	D-isomer specific 2-hydroxyacid dehydrogenase
4213	 65.56	0	4883011..4883910	-	299	104783529	-	PSEEN4563	-	hypothetical protein
4214	 68.84	+1	4884141..4885016	+	291	104783530	-	PSEEN4564	-	AraC family transcriptional regulator
4215	 65.91	0	4885131..4887524	-	797	104783531	-	PSEEN4565	-	TonB-dependent siderophore receptor
4216	 69.34	+1	4887791..4888762	-	323	104783532	-	PSEEN4566	-	FecR-like transmembrane sensor
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.