IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
363	 65.30	0	424794..426476	-	560	104779679	-	PSEEN0401	-	amino oxydase
364	 61.59	0	426639..426953	-	104	104779680	-	PSEEN0403	-	hypothetical protein
365	 64.26	0	427496..427786	+	96	104779681	-	PSEEN0406	-	hypothetical protein
366	 66.67	0	427805..428266	-	153	104779682	-	PSEEN0407	-	AsnC family transcriptional regulator
367	 58.24	-1	428564..429121	+	185	104779683	-	PSEEN0409	-	hypothetical protein
368	 64.20	0	429674..430810	+	378	104779684	-	PSEEN0410	-	hypothetical protein
369	 66.51	0	430810..431430	+	206	104779685	prfH	PSEEN0411	-	peptide chain release factor-like protein
370	 64.18	0	431707..435450	-	1247	104779686	-	PSEEN0412	-	sensory box protein
371	 62.07	0	435570..437420	-	616	104779687	rpoD	PSEEN0413	-	RNA polymerase sigma factor RpoD
372	 62.68	0	437488..439470	-	660	104779688	dnaG	PSEEN0414	-	DNA primase
373	 57.41	-1	439750..439965	-	71	104779689	rpsU	PSEEN0416	-	30S ribosomal protein S21
374	 64.52	0	440171..441196	+	341	104779690	gcp	PSEEN0417	-	O-sialoglycoprotein endopeptidase
375	 65.26	0	441217..441786	-	189	104779691	-	PSEEN0418	-	putative glycerol-3-phosphate acyltransferase PlsY
376	 63.03	0	441861..442217	+	118	104779692	folB	PSEEN0419	-	dihydroneopterin aldolase
377	 61.96	0	442208..442717	+	169	104779693	-	PSEEN0420	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
378	 63.74	0	442786..443913	-	375	104779694	cca	PSEEN0421	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
379	 60.61	0	443968..445536	-	522	104779695	-	PSEEN0422	-	hypothetical protein
380	 60.69	0	445533..446804	-	423	104779696	-	PSEEN0423	-	hypothetical protein
381	 57.93	-1	446924..448846	-	640	104779697	-	PSEEN0424	-	serine protein kinase
382	 64.85	0	449132..449461	-	109	104779698	glpE	PSEEN0425	-	thiosulfate sulfurtransferase
383	 64.45	0	449475..450332	-	285	104779699	apaH	PSEEN0426	-	diadenosine tetraphosphatase
384	 63.78	0	450332..450712	-	126	104779700	apaG	PSEEN0427	-	ApaG
385	 65.79	0	450851..451651	-	266	104779701	ksgA	PSEEN0428	-	dimethyladenosine transferase
386	 68.55	0	451648..452658	-	336	104779702	pdxA	PSEEN0429	-	4-hydroxythreonine-4-phosphate dehydrogenase
387	 64.39	0	452655..453974	-	439	104779703	-	PSEEN0430	-	peptidyl-prolyl cis-trans isomerase A
388	 60.14	0	453955..456789	-	944	104779704	-	PSEEN0431	-	organic solvent tolerance protein precursor OstA
389	 64.51	0	456922..457941	+	339	104779705	-	PSEEN0432	-	phosphotransferase
390	 65.48	0	457938..458609	+	223	104779706	-	PSEEN0433	-	nucleotidyltransferase
391	 68.89	+1	458611..459375	+	254	104779707	-	PSEEN0434	-	DnaJ-like co-chaperone
392	 66.77	0	459560..460558	-	332	104779708	-	PSEEN0435	-	hypothetical protein
393	 65.58	0	460654..463041	+	795	104779709	-	PSEEN0436	-	sensory box histidine kinase
394	 66.03	0	463054..463683	+	209	104779710	-	PSEEN0437	-	LuxR family DNA-binding response regulator
395	 65.78	0	463964..465085	+	373	104779711	-	PSEEN0438	-	polyamine ABC transporter, ATP-binding protein
396	 62.51	0	465126..466160	+	344	104779712	-	PSEEN0439	-	polyamine ABC transporter, periplasmic polyamine-binding protein
397	 64.26	0	466255..467502	+	415	104779713	-	PSEEN0440	-	polyamine ABC transporter, permease protein
398	 64.01	0	467514..468341	+	275	104779714	-	PSEEN0441	-	polyamine ABC transporter, permease protein
399	 64.30	0	468532..469206	+	224	104779715	rpe	PSEEN0442	-	ribulose-phosphate 3-epimerase
400	 64.10	0	469203..470021	+	272	104779716	gph	PSEEN0443	-	phosphoglycolate phosphatase
401	 63.35	0	470092..471570	+	492	104779717	trpE	PSEEN0444	-	anthranilate synthase component I
402	 66.40	0	471754..473655	-	633	104779718	estA	PSEEN0445	-	esterase estA precursor
403	 57.58	-1	473789..473887	+	32	104779719	-	PSEEN0446	-	hypothetical protein
404	 61.78	0	474033..474626	+	197	104779720	trpG	PSEEN0447	-	anthranilate synthase component II
405	 64.29	0	474636..475685	+	349	104779721	trpD	PSEEN0448	-	anthranilate phosphoribosyltransferase
406	 62.01	0	475682..476518	+	278	104779722	trpC	PSEEN0449	-	indole-3-glycerol-phosphate synthase
407	 65.11	0	476684..477388	+	234	104779723	-	PSEEN0450	-	hypothetical protein
408	 61.40	0	477385..478029	-	214	104779724	vfr	PSEEN0451	-	cAMP-regulatory protein
409	 62.88	0	478219..478641	+	140	104779725	-	PSEEN0452	-	hypothetical protein
410	 59.05	-1	478662..479081	-	139	104779726	-	PSEEN0453	-	hypothetical protein
411	 62.43	0	479090..480127	-	345	104779727	-	PSEEN0454	-	hypothetical protein
412	 63.27	0	480138..480785	-	215	104779728	-	PSEEN0455	-	ubiquinone biosynthesis protein COQ7
413	 59.88	0	480851..481189	-	112	104779729	-	PSEEN0456	-	hypothetical protein
414	 64.99	0	481254..482027	-	257	104779730	-	PSEEN0457	-	short chain dehydrogenase/reductase family oxidoreductase
415	 64.26	0	482079..483035	-	318	104779731	-	PSEEN0458	-	dioxygenases related to 2-nitropropane dioxygenase
416	 61.20	0	483066..483431	-	121	104779732	-	PSEEN0459	-	hypothetical protein
417	 65.99	0	483632..484666	+	344	104779733	argC	PSEEN0460	-	N-acetyl-gamma-glutamyl-phosphate reductase
418	 59.83	0	484812..485162	+	116	104779734	-	PSEEN0461	-	iron-sulfur cluster insertion protein ErpA
419	 64.19	0	485223..486314	-	363	104779735	anmK	PSEEN0462	-	anhydro-N-acetylmuramic acid kinase
420	 60.39	0	486319..487815	-	498	104779736	-	PSEEN0463	-	M24/M37 family peptidase
421	 59.67	0	487947..489146	+	399	104779737	tyrS	PSEEN0464	-	tyrosyl-tRNA synthetase
422	 58.75	-1	495434..496393	+	319	104779738	-	PSEEN0471	-	biotin--protein ligase
423	 60.00	0	496383..497132	+	249	104779739	-	PSEEN0472	-	pantothenate kinase
424	 56.10	-1	497140..497565	+	141	104779740	-	PSEEN0473	-	hypothetical protein
425	 57.12	-1	498083..499276	+	397	104779741	tufB	PSEEN0475	-	elongation factor Tu
426	 56.10	-1	499451..499819	+	122	104779742	secE	PSEEN0476	-	preprotein translocase subunit SecE
427	 55.99	-1	499829..500362	+	177	104779743	nusG	PSEEN0477	-	transcription antitermination protein NusG
428	 58.33	-1	500482..500913	+	143	104779744	rplK	PSEEN0478	-	50S ribosomal protein L11
429	 57.18	-1	500913..501608	+	231	104779745	rplA	PSEEN0479	-	50S ribosomal protein L1
430	 57.49	-1	501808..502308	+	166	104779746	rplJ	PSEEN0480	-	50S ribosomal protein L10
431	 53.12	-2	502387..502755	+	122	104779747	rplL	PSEEN0481	-	50S ribosomal protein L7/L12
432	 59.70	0	502974..507047	+	1357	104779748	rpoB	PSEEN0482	-	DNA-directed RNA polymerase subunit beta
433	 60.31	0	507112..511311	+	1399	104779749	rpoC	PSEEN0483	-	DNA-directed RNA polymerase subunit beta'
434	 58.06	-1	511523..511894	+	123	104779750	rpsL	PSEEN0484	-	30S ribosomal protein S12
435	 58.17	-1	512001..512471	+	156	104779751	rpsG	PSEEN0485	-	30S ribosomal protein S7
436	 57.91	-1	512502..514649	+	715	104779752	fusA-1	PSEEN0486	-	elongation factor G
437	 57.37	-1	514677..515870	+	397	104779753	tufA	PSEEN0487	-	elongation factor Tu
438	 53.21	-2	516012..516323	+	103	104779754	rpsJ	PSEEN0489	-	30S ribosomal protein S10
439	 58.02	-1	516404..517039	+	211	104779755	rplC	PSEEN0490	-	50S ribosomal protein L3
440	 58.04	-1	517052..517654	+	200	104779756	rplD	PSEEN0491	-	50S ribosomal protein L4
441	 50.33	-2	517651..517950	+	99	104779757	rplW	PSEEN0492	-	50S ribosomal protein L23
442	 58.79	-1	517965..518789	+	274	104779758	rplB	PSEEN0493	-	50S ribosomal protein L2
443	 56.16	-1	518806..519081	+	91	104779759	rpsS	PSEEN0494	-	30S ribosomal protein S19
444	 57.66	-1	519093..519425	+	110	104779760	rplV	PSEEN0495	-	50S ribosomal protein L22
445	 56.19	-1	519439..520125	+	228	104779761	rpsC	PSEEN0496	-	30S ribosomal protein S3
446	 57.97	-1	520138..520551	+	137	104779762	rplP	PSEEN0497	-	50S ribosomal protein L16
447	 53.33	-2	520548..520742	+	64	104779763	rpmC	PSEEN0498	-	50S ribosomal protein L29
448	 54.68	-2	520745..521011	+	88	104779764	rpsQ	PSEEN0499	-	30S ribosomal protein S17
449	 56.64	-1	521035..521403	+	122	104779765	rplN	PSEEN0500	-	50S ribosomal protein L14
450	 52.70	-2	521415..521729	+	104	104779766	rplX	PSEEN0501	-	50S ribosomal protein L24
451	 56.48	-1	521750..522289	+	179	104779767	rplE	PSEEN0502	-	50S ribosomal protein L5
452	 61.11	0	522303..522608	+	101	104779768	rpsN	PSEEN0503	-	30S ribosomal protein S14
453	 57.25	-1	522818..523210	+	130	104779769	rpsH	PSEEN0504	-	30S ribosomal protein S8
454	 58.80	-1	523223..523756	+	177	104779770	rplF	PSEEN0505	-	50S ribosomal protein L6
455	 59.26	-1	523767..524117	+	116	104779771	rplR	PSEEN0506	-	50S ribosomal protein L18
456	 58.08	-1	524121..524621	+	166	104779772	rpsE	PSEEN0507	-	30S ribosomal protein S5
457	 54.24	-2	524624..524800	+	58	104779773	rpmD	PSEEN0508	-	50S ribosomal protein L30
458	 60.69	0	524804..525238	+	144	104779774	rplO	PSEEN0509	-	50S ribosomal protein L15
459	 57.58	-1	525239..526570	+	443	104779775	secY	PSEEN0510	-	preprotein translocase subunit SecY
460	 55.56	-1	526601..526717	+	38	104779776	rpmJ	PSEENCDS526601D	-	50S ribosomal protein L36
461	 55.74	-1	526849..527205	+	118	104779777	rpsM	PSEEN0511	-	30S ribosomal protein S13
462	 57.95	-1	527224..527613	+	129	104779778	rpsK	PSEEN0512	-	30S ribosomal protein S11
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.