IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3816	 62.20	0	4441918..4442655	+	245	104783132	-	PSEEN4157	-	phage protein
3817	 54.63	-2	4442745..4443176	-	143	104783133	-	PSEEN4158	-	phage protein
3818	 62.88	0	4443180..4445876	-	898	104783134	-	PSEEN4159	-	phage variable tail fibre protein
3819	 66.67	0	4445869..4446480	-	203	104783135	gpI	PSEEN4160	-	pyocin R2_PP, tail formation protein GpI
3820	 69.39	+1	4446482..4447363	-	293	104783136	gpJ	PSEEN4161	-	pyocin R2_PP, baseplate/tail fiber protein
3821	 70.95	+1	4447360..4447686	-	108	104783137	gpW	PSEEN4162	-	pyocin R2_PP, baseplate protein
3822	 69.35	+1	4447769..4448326	-	185	104783138	gpV	PSEEN4163	-	pyocin R2_PP
3823	 67.27	0	4448323..4448820	-	165	104783139	-	PSEEN4164	-	phage protein
3824	 60.87	0	4448940..4449284	-	114	104783140	-	PSEEN4165	-	hypothetical protein
3825	 61.12	0	4449292..4450590	-	432	104783141	-	PSEEN4166	-	phage protein
3826	 59.32	-1	4450798..4451178	-	126	104783142	-	PSEEN4167	-	phage tail fiber assembly protein
3827	 60.85	0	4451191..4452411	-	406	104783143	-	PSEEN4168	-	phage protein
3828	 58.46	-1	4452408..4452602	-	64	104783144	-	PSEEN4169	-	phage protein
3829	 57.03	-1	4452586..4452969	-	127	104783145	-	PSEEN4170	-	phage protein
3830	 64.30	0	4452969..4456946	-	1325	104783146	-	PSEEN4171	-	phage protein
3831	 66.67	0	4457005..4457193	-	62	104783147	-	PSEEN4172	-	hypothetical protein
3832	 66.07	0	4457207..4457539	-	110	104783148	-	PSEEN4173	-	hypothetical protein
3833	 63.79	0	4457539..4458546	-	335	104783149	-	PSEEN4174	-	hypothetical protein
3834	 66.83	0	4458569..4459180	-	203	104783150	-	PSEEN4175	-	phage tail protein
3835	 69.80	+1	4459247..4460011	-	254	104783151	-	PSEEN4176	-	phage protein; peptidase
3836	 66.13	0	4460015..4460764	-	249	104783152	-	PSEEN4177	-	phage tail protein
3837	 67.27	0	4460783..4461115	-	110	104783153	-	PSEEN4178	-	prophage LambdaSo, minor tail protein M
3838	 65.01	0	4461131..4462396	-	421	104783154	-	PSEEN4179	-	phage protein
3839	 66.67	0	4462463..4462717	-	84	104783155	-	PSEEN4180	-	phage protein
3840	 58.97	-1	4462747..4463097	-	116	104783156	-	PSEEN4181	-	hypothetical protein
3841	 65.24	0	4463112..4463603	-	163	104783157	-	PSEEN4182	-	phage major tail protein
3842	 66.67	0	4463689..4463871	-	60	104783158	-	PSEEN4183	-	phage protein
3843	 68.64	+1	4463886..4464239	-	117	104783159	-	PSEEN4184	-	pyocin R2_PP, holin
3844	 43.48	-2	4464500..4464637	-	45	104783160	-	PSEEN4185	-	hypothetical protein
3845	 61.71	0	4464707..4465453	-	248	104783161	-	PSEEN4186	-	transcriptional regulator
3846	 66.71	0	4465629..4468202	+	857	104783162	mutS	PSEEN4187	-	DNA mismatch repair protein
3847	 58.95	-1	4468342..4468665	+	107	104783163	fdxA	PSEEN4188	-	ferredoxin
3848	 60.22	0	4469138..4470145	-	335	104783164	rpoS	PSEEN4189	-	RNA polymerase sigma factor RpoS
3849	 61.83	0	4470251..4471036	-	261	104783165	-	PSEEN4190	-	peptidase M23B
3850	 65.63	0	4471286..4471963	-	225	104783166	pcm	PSEEN4191	-	protein-L-isoaspartate O-methyltransferase
3851	 66.13	0	4471963..4472712	-	249	104783167	surE	PSEEN4192	-	stationary phase survival protein SurE
3852	 68.46	0	4472700..4473758	-	352	104783168	truD	PSEEN4193	-	tRNA pseudouridine synthase D
3853	 63.71	0	4473755..4474228	-	157	104783169	ispF	PSEEN4194	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3854	 65.49	0	4474383..4475231	-	282	104783170	-	PSEEN4195	-	esterase
3855	 64.69	0	4475242..4476354	-	370	104783171	adhC-2	PSEEN4196	-	alcohol dehydrogenase class III
3856	 65.89	0	4476463..4477365	+	300	104783172	-	PSEEN4197	-	LysR family transcriptional regulator
3857	 66.38	0	4477466..4478173	-	235	104783173	ispD	PSEEN4198	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
3858	 57.80	-1	4478170..4478451	-	93	104783174	ftsB	PSEEN4199	-	cell division protein FtsB-like
3859	 63.33	0	4478610..4479899	-	429	104783175	eno	PSEEN4200	-	phosphopyruvate hydratase
3860	 63.48	0	4480052..4480897	-	281	104783176	kdsA	PSEEN4201	-	2-dehydro-3-deoxyphosphooctonate aldolase
3861	 63.04	0	4480901..4482529	-	542	104783177	pyrG	PSEEN4202	-	CTP synthetase
3862	 68.67	+1	4482799..4484094	-	431	104783178	-	PSEEN4203	-	cell cycle protein MesJ
3863	 62.55	0	4484196..4485143	-	315	104783179	accA	PSEEN4204	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
3864	 63.21	0	4485249..4488773	-	1174	104783180	dnaE	PSEEN4205	-	DNA polymerase III subunit alpha
3865	 65.22	0	4488928..4489551	-	207	104783181	rnhB	PSEEN4206	-	ribonuclease HII
3866	 65.07	0	4489553..4490680	-	375	104783182	lpxB	PSEEN4207	-	lipid-A-disaccharide synthase
3867	 61.90	0	4490682..4491458	-	258	104783183	lpxA	PSEEN4208	-	UDP-N-acetylglucosamine acyltransferase
3868	 61.45	0	4491455..4491895	-	146	104783184	fabZ	PSEEN4209	-	(3R)-hydroxymyristoyl-ACP dehydratase
3869	 62.50	0	4492010..4493065	-	351	104783185	lpxD	PSEEN4210	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
3870	 60.52	0	4493067..4493570	-	167	104783186	-	PSEEN4211	-	outer membrane protein OmpH-like
3871	 61.21	0	4493615..4495978	-	787	104783187	-	PSEEN4212	-	surface antigen family outer membrane protein
3872	 63.34	0	4496054..4497406	-	450	104783188	-	PSEEN4213	-	membrane-associated Zn-dependent proteases 1
3873	 67.33	0	4497450..4498664	-	404	104783189	dxr	PSEEN4214	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
3874	 65.81	0	4498637..4499452	-	271	104783190	cdsA	PSEEN4215	-	phosphatidate cytidylyltransferase
3875	 64.95	0	4499452..4500207	-	251	104783191	uppS	PSEEN4216	-	undecaprenyl diphosphate synthase
3876	 62.54	0	4500223..4500780	-	185	104783192	frr	PSEEN4217	-	ribosome recycling factor
3877	 61.29	0	4500777..4501520	-	247	104783193	pyrH	PSEEN4218	-	uridylate kinase
3878	 58.68	-1	4501702..4502565	-	287	104783194	tsf	PSEEN4219	-	elongation factor Ts
3879	 58.67	-1	4502753..4503490	-	245	104783195	rpsB	PSEEN4220	-	30S ribosomal protein S2
3880	 61.43	0	4503838..4504620	+	260	104783196	map	PSEEN4221	-	methionine aminopeptidase
3881	 64.37	0	4504647..4507349	+	900	104783197	glnD	PSEEN4222	-	PII uridylyl-transferase
3882	 66.58	0	4507371..4508564	+	397	104783198	-	PSEEN4223	-	hypothetical protein
3883	 62.20	0	4508639..4509400	+	253	104783199	-	PSEEN4224	-	hypothetical protein
3884	 65.94	0	4509393..4511039	-	548	104783200	-	PSEEN4225	-	sodium/hydrogen antiporter
3885	 60.92	0	4511309..4511656	+	115	104783201	-	PSEEN4226	-	hypothetical protein
3886	 66.57	0	4511700..4512734	+	344	104783202	-	PSEEN4227	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD
3887	 63.68	0	4512814..4514019	+	401	104783203	csdA	PSEEN4228	-	cysteine sulfinate desulfinase
3888	 60.34	0	4514016..4514426	+	136	104783204	-	PSEEN4229	-	hypothetical protein
3889	 66.05	0	4514514..4515323	-	269	104783205	-	PSEEN4230	-	hypothetical protein
3890	 63.70	0	4515566..4518157	+	863	104783206	-	PSEEN4231	-	glycosyl transferase
3891	 66.93	0	4518353..4519504	+	383	104783207	dapE	PSEEN4232	-	succinyl-diaminopimelate desuccinylase
3892	 68.02	0	4519504..4520316	+	270	104783208	-	PSEEN4233	-	23S rRNA m1G745 methyltransferase RrmA
3893	 61.11	0	4520335..4520712	+	125	104783209	-	PSEEN4234	-	hypothetical protein
3894	 59.52	-1	4520789..4520998	-	69	104783210	-	PSEEN4235	-	cold shock protein CspE-like
3895	 64.74	0	4521228..4523714	+	828	104783211	plsB	PSEEN4236	-	glycerol-3-phosphate acyltransferase
3896	 58.51	-1	4523884..4524594	+	236	104783212	-	PSEEN4237	-	hypothetical protein
3897	 64.41	0	4524684..4525082	+	132	104783213	-	PSEEN4238	-	lipoprotein
3898	 63.76	0	4525115..4525801	+	228	104783214	-	PSEEN4239	-	hypothetical protein
3899	 64.38	0	4525971..4529036	-	1021	104783215	-	PSEEN4240	-	Acr-type multidrug efflux transporter
3900	 68.31	0	4529043..4530140	-	365	104783216	-	PSEEN4241	-	multidrug RND transporter, membrane fusion protein
3901	 64.02	0	4530311..4530952	+	213	104783217	-	PSEEN4243	-	TetR family transcriptional regulator
3902	 64.68	0	4531885..4533594	-	569	104783218	recJ	PSEEN4244	-	ss DNA specific exonuclease RecJ
3903	 64.09	0	4533625..4534167	-	180	104783219	-	PSEEN4245	-	hypothetical protein
3904	 65.50	0	4534494..4535693	+	399	104783220	-	PSEEN4246	-	CAIB/BAIF family protein
3905	 63.00	0	4535706..4536578	+	290	104783221	-	PSEEN4247	-	hypothetical protein
3906	 61.70	0	4536714..4536995	-	93	104783222	-	PSEEN4248	-	hypothetical protein
3907	 64.72	0	4537104..4537514	-	136	104783223	-	PSEEN4249	-	hypothetical protein
3908	 64.68	0	4537669..4539078	-	469	104783224	thrC	PSEEN4251	-	threonine synthase
3909	 64.23	0	4539130..4540482	-	450	104783225	hom	PSEEN4252	-	homoserine dehydrogenase
3910	 66.80	0	4540517..4541278	-	253	104783226	dsbC	PSEEN4253	-	Thiol:disulfide interchange protein DsbC
3911	 66.56	0	4541432..4542328	-	298	104783227	xerD	PSEEN4254	-	site-specific tyrosine recombinase XerD
3912	 66.61	0	4542397..4544202	+	601	104783228	-	PSEEN4255	-	sodium/hydrogen exchanger family protein
3913	 63.97	0	4544294..4544701	-	135	104783229	-	PSEEN4256	-	long-chain acyl-CoA thioester hydrolase
3914	 58.40	-1	4544802..4545152	-	116	104783230	rplS	PSEEN4257	-	50S ribosomal protein L19
3915	 58.83	-1	4545196..4545948	-	250	104783231	trmD	PSEEN4258	-	tRNA (guanine-N(1)-)-methyltransferase
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.