IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3769	 63.52	0	4400369..4401322	+	317	104783085	-	PSEEN4106	-	lipoprotein
3770	 61.22	0	4401353..4402417	-	354	104783086	dinP	PSEEN4107	-	DNA polymerase IV
3771	 67.42	0	4403389..4406031	+	880	104783087	-	PSEEN4110	-	hypothetical protein
3772	 66.28	0	4406031..4407323	+	430	104783088	-	PSEEN4111	-	hypothetical protein
3773	 64.57	0	4407411..4409321	-	636	104783089	trkD	PSEEN4112	-	Kup system potassium uptake protein
3774	 63.89	0	4409558..4410889	+	443	104783090	-	PSEEN4113	-	hypothetical protein
3775	 61.23	0	4410864..4411433	+	189	104783091	-	PSEEN4114	-	acyltransferase
3776	 67.37	0	4411555..4412265	+	236	104783092	-	PSEEN4116	-	hypothetical protein
3777	 59.74	0	4412316..4412777	+	153	104783093	-	PSEEN4117	-	hypothetical protein
3778	 63.36	0	4412784..4413479	+	231	104783094	-	PSEEN4118	-	hypothetical protein
3779	 61.03	0	4413615..4414394	-	259	104783095	fpr-1	PSEEN4119	-	ferredoxin--NADP+ reductase
3780	 62.14	0	4414515..4415441	+	308	104783096	-	PSEEN4120	-	LysR family transcriptional regulator
3781	 64.21	0	4415445..4415810	-	121	104783097	dgkA	PSEEN4121	-	diacylglycerol kinase
3782	 61.90	0	4415886..4416536	-	216	104783098	-	PSEEN4122	-	LuxR family DNA-binding response regulator
3783	 63.71	0	4416793..4417503	-	236	104783099	-	PSEEN4123	-	hypothetical protein
3784	 60.99	0	4417718..4418140	+	140	104783100	-	PSEEN4124	-	hypothetical protein
3785	 66.67	0	4418142..4418381	-	79	104783101	-	PSEEN4125	-	hypothetical protein
3786	 62.11	0	4418654..4419772	+	372	104783102	-	PSEEN4126	-	hypothetical protein
3787	 64.32	0	4419825..4420292	-	155	104783103	recX	PSEEN4127	-	recombination regulator RecX
3788	 63.20	0	4420301..4421368	-	355	104783104	recA	PSEEN4128	-	recombinase A
3789	 69.15	+1	4421473..4421955	-	160	104783105	-	PSEEN4129	-	hypothetical protein
3790	 68.06	0	4421997..4422497	-	166	104783106	-	PSEEN4130	-	phage protein
3791	 67.03	0	4422491..4423042	-	183	104783107	-	PSEEN4131	-	pyocin R2_PP, lytic enzyme
3792	 63.33	0	4423029..4423238	-	69	104783108	-	PSEEN4132	-	Mu-like phage translational regulator CoM
3793	 63.54	0	4423416..4423799	-	127	104783109	-	PSEEN4134	-	phage tail fiber assembly-like protein
3794	 62.32	0	4423809..4425095	-	428	104783110	-	PSEEN4135	-	Mu-like phage tail fiber protein
3795	 69.80	+1	4425038..4425643	-	201	104783111	-	PSEEN4136	-	hypothetical protein
3796	 70.61	+1	4425625..4426665	-	346	104783112	-	PSEEN4137	-	Mu-like phage protein gp47
3797	 67.42	0	4426655..4427053	-	132	104783113	-	PSEEN4138	-	Mu-like phage protein gp46
3798	 68.46	0	4427050..4427550	-	166	104783114	-	PSEEN4139	-	Mu-like phage assembly protein gp45
3799	 68.28	0	4427576..4428631	-	351	104783115	-	PSEEN4140	-	Mu-like phage tail protein gpP
3800	 69.59	+1	4428635..4429936	-	433	104783116	-	PSEEN4141	-	Mu-like phage DNA circulation protein
3801	 68.21	0	4429926..4431809	-	627	104783117	-	PSEEN4142	-	phage tail protein
3802	 63.54	0	4431809..4431904	-	31	104783118	-	PSEEN4143	-	phage protein
3803	 65.66	0	4431940..4432236	-	98	104783119	-	PSEEN4144	-	phage protein
3804	 63.22	0	4432233..4432580	-	115	104783120	-	PSEEN4145	-	phage tail tube protein
3805	 67.67	0	4432638..4434134	-	498	104783121	-	PSEEN4146	-	phage sheath protein
3806	 69.40	+1	4434134..4434316	-	60	104783122	-	PSEEN4147	-	Mu-like phage protein gp38
3807	 69.39	+1	4434313..4434900	-	195	104783123	-	PSEEN4148	-	phage protein
3808	 68.70	+1	4434957..4435991	-	344	104783124	-	PSEEN4149	-	pyocin R2_PP, tail formation GPD
3809	 66.67	0	4436011..4436184	-	57	104783125	-	PSEEN4150	-	pyocin R2_PP, tail component protein
3810	 68.09	0	4436192..4437037	-	281	104783126	-	PSEEN4151	-	pyocin R2_PP, tail formation protein gpU
3811	 65.29	0	4437050..4439158	-	702	104783127	-	PSEEN4152	-	pyocin R2_PP, tail length determination protein
3812	 66.34	0	4439284..4439586	-	100	104783128	-	PSEEN4153	-	hypothetical protein
3813	 62.35	0	4439599..4440108	-	169	104783129	-	PSEEN4154	-	pyocin R2_PP, tail tube protein GpFII
3814	 66.41	0	4440122..4441288	-	388	104783130	-	PSEEN4155	-	pyocin R2_PP, tail sheath protein gpFI
3815	 60.29	0	4441386..4441997	-	203	104783131	-	PSEEN4156	-	phage protein
3816	 62.20	0	4441918..4442655	+	245	104783132	-	PSEEN4157	-	phage protein
3817	 54.63	-2	4442745..4443176	-	143	104783133	-	PSEEN4158	-	phage protein
3818	 62.88	0	4443180..4445876	-	898	104783134	-	PSEEN4159	-	phage variable tail fibre protein
3819	 66.67	0	4445869..4446480	-	203	104783135	gpI	PSEEN4160	-	pyocin R2_PP, tail formation protein GpI
3820	 69.39	+1	4446482..4447363	-	293	104783136	gpJ	PSEEN4161	-	pyocin R2_PP, baseplate/tail fiber protein
3821	 70.95	+1	4447360..4447686	-	108	104783137	gpW	PSEEN4162	-	pyocin R2_PP, baseplate protein
3822	 69.35	+1	4447769..4448326	-	185	104783138	gpV	PSEEN4163	-	pyocin R2_PP
3823	 67.27	0	4448323..4448820	-	165	104783139	-	PSEEN4164	-	phage protein
3824	 60.87	0	4448940..4449284	-	114	104783140	-	PSEEN4165	-	hypothetical protein
3825	 61.12	0	4449292..4450590	-	432	104783141	-	PSEEN4166	-	phage protein
3826	 59.32	-1	4450798..4451178	-	126	104783142	-	PSEEN4167	-	phage tail fiber assembly protein
3827	 60.85	0	4451191..4452411	-	406	104783143	-	PSEEN4168	-	phage protein
3828	 58.46	-1	4452408..4452602	-	64	104783144	-	PSEEN4169	-	phage protein
3829	 57.03	-1	4452586..4452969	-	127	104783145	-	PSEEN4170	-	phage protein
3830	 64.30	0	4452969..4456946	-	1325	104783146	-	PSEEN4171	-	phage protein
3831	 66.67	0	4457005..4457193	-	62	104783147	-	PSEEN4172	-	hypothetical protein
3832	 66.07	0	4457207..4457539	-	110	104783148	-	PSEEN4173	-	hypothetical protein
3833	 63.79	0	4457539..4458546	-	335	104783149	-	PSEEN4174	-	hypothetical protein
3834	 66.83	0	4458569..4459180	-	203	104783150	-	PSEEN4175	-	phage tail protein
3835	 69.80	+1	4459247..4460011	-	254	104783151	-	PSEEN4176	-	phage protein; peptidase
3836	 66.13	0	4460015..4460764	-	249	104783152	-	PSEEN4177	-	phage tail protein
3837	 67.27	0	4460783..4461115	-	110	104783153	-	PSEEN4178	-	prophage LambdaSo, minor tail protein M
3838	 65.01	0	4461131..4462396	-	421	104783154	-	PSEEN4179	-	phage protein
3839	 66.67	0	4462463..4462717	-	84	104783155	-	PSEEN4180	-	phage protein
3840	 58.97	-1	4462747..4463097	-	116	104783156	-	PSEEN4181	-	hypothetical protein
3841	 65.24	0	4463112..4463603	-	163	104783157	-	PSEEN4182	-	phage major tail protein
3842	 66.67	0	4463689..4463871	-	60	104783158	-	PSEEN4183	-	phage protein
3843	 68.64	+1	4463886..4464239	-	117	104783159	-	PSEEN4184	-	pyocin R2_PP, holin
3844	 43.48	-2	4464500..4464637	-	45	104783160	-	PSEEN4185	-	hypothetical protein
3845	 61.71	0	4464707..4465453	-	248	104783161	-	PSEEN4186	-	transcriptional regulator
3846	 66.71	0	4465629..4468202	+	857	104783162	mutS	PSEEN4187	-	DNA mismatch repair protein
3847	 58.95	-1	4468342..4468665	+	107	104783163	fdxA	PSEEN4188	-	ferredoxin
3848	 60.22	0	4469138..4470145	-	335	104783164	rpoS	PSEEN4189	-	RNA polymerase sigma factor RpoS
3849	 61.83	0	4470251..4471036	-	261	104783165	-	PSEEN4190	-	peptidase M23B
3850	 65.63	0	4471286..4471963	-	225	104783166	pcm	PSEEN4191	-	protein-L-isoaspartate O-methyltransferase
3851	 66.13	0	4471963..4472712	-	249	104783167	surE	PSEEN4192	-	stationary phase survival protein SurE
3852	 68.46	0	4472700..4473758	-	352	104783168	truD	PSEEN4193	-	tRNA pseudouridine synthase D
3853	 63.71	0	4473755..4474228	-	157	104783169	ispF	PSEEN4194	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3854	 65.49	0	4474383..4475231	-	282	104783170	-	PSEEN4195	-	esterase
3855	 64.69	0	4475242..4476354	-	370	104783171	adhC-2	PSEEN4196	-	alcohol dehydrogenase class III
3856	 65.89	0	4476463..4477365	+	300	104783172	-	PSEEN4197	-	LysR family transcriptional regulator
3857	 66.38	0	4477466..4478173	-	235	104783173	ispD	PSEEN4198	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
3858	 57.80	-1	4478170..4478451	-	93	104783174	ftsB	PSEEN4199	-	cell division protein FtsB-like
3859	 63.33	0	4478610..4479899	-	429	104783175	eno	PSEEN4200	-	phosphopyruvate hydratase
3860	 63.48	0	4480052..4480897	-	281	104783176	kdsA	PSEEN4201	-	2-dehydro-3-deoxyphosphooctonate aldolase
3861	 63.04	0	4480901..4482529	-	542	104783177	pyrG	PSEEN4202	-	CTP synthetase
3862	 68.67	+1	4482799..4484094	-	431	104783178	-	PSEEN4203	-	cell cycle protein MesJ
3863	 62.55	0	4484196..4485143	-	315	104783179	accA	PSEEN4204	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
3864	 63.21	0	4485249..4488773	-	1174	104783180	dnaE	PSEEN4205	-	DNA polymerase III subunit alpha
3865	 65.22	0	4488928..4489551	-	207	104783181	rnhB	PSEEN4206	-	ribonuclease HII
3866	 65.07	0	4489553..4490680	-	375	104783182	lpxB	PSEEN4207	-	lipid-A-disaccharide synthase
3867	 61.90	0	4490682..4491458	-	258	104783183	lpxA	PSEEN4208	-	UDP-N-acetylglucosamine acyltransferase
3868	 61.45	0	4491455..4491895	-	146	104783184	fabZ	PSEEN4209	-	(3R)-hydroxymyristoyl-ACP dehydratase
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.