IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3745	 65.63	0	4379494..4380750	-	418	104783061	-	PSEEN4081	-	Type I secretion system membrane fusion protein, HlyD
3746	 59.66	0	4380843..4381199	+	118	104783062	-	PSEEN4082	-	hypothetical protein
3747	 64.15	0	4381460..4382134	-	224	104783063	-	PSEEN4083	-	hypothetical protein
3748	 64.04	0	4382145..4382792	-	215	104783064	-	PSEEN4084	-	radical activating enzyme
3749	 63.09	0	4382953..4383762	-	269	104783065	-	PSEEN4085	-	hypothetical protein
3750	 58.84	-1	4383769..4384266	-	165	104783066	pal	PSEEN4086	-	peptidoglycan-associated lipoprotein precursor
3751	 60.91	0	4384320..4385621	-	433	104783067	tolB	PSEEN4087	-	translocation protein TolB
3752	 60.63	0	4385618..4386694	-	358	104783068	tolA	PSEEN4088	-	biopolymer transport protein TolA
3753	 59.38	-1	4386694..4387146	-	150	104783069	tolR	PSEEN4089	-	biopolymer transport protein TolR
3754	 64.37	0	4387161..4387856	-	231	104783070	tolQ	PSEEN4090	-	biopolymer transport protein TolQ
3755	 62.47	0	4387859..4388311	-	150	104783071	-	PSEEN4091	-	thioesterase
3756	 66.09	0	4388437..4389483	-	348	104783072	ruvB	PSEEN4092	-	Holliday junction DNA helicase B
3757	 63.92	0	4389480..4390097	-	205	104783073	ruvA	PSEEN4093	-	Holliday junction DNA helicase motor protein
3758	 66.29	0	4390206..4390730	-	174	104783074	ruvC	PSEEN4094	-	Holliday junction resolvase
3759	 63.08	0	4390853..4391605	-	250	104783075	-	PSEEN4095	-	hypothetical protein
3760	 63.57	0	4391717..4393492	-	591	104783076	aspS	PSEEN4096	-	aspartyl-tRNA synthetase
3761	 62.16	0	4393587..4393808	-	73	104783077	-	PSEEN4097	-	hypothetical protein
3762	 64.90	0	4393901..4394239	-	112	104783078	-	PSEEN4098	-	hypothetical protein
3763	 59.70	0	4394424..4394897	-	157	104783079	-	PSEEN4099	-	Dps family DNA-binding stress response protein
3764	 65.65	0	4395143..4395733	+	196	104783080	-	PSEEN4100	-	cold shock protein
3765	 60.39	0	4395753..4395959	-	68	104783081	-	PSEEN4101	-	hypothetical protein
3766	 64.76	0	4395963..4396382	-	139	104783082	-	PSEEN4102	-	hypothetical protein
3767	 62.34	0	4397158..4398474	+	438	104783083	oprD	PSEEN4104	-	porin D
3768	 64.04	0	4398632..4400347	+	571	104783084	proS	PSEEN4105	-	prolyl-tRNA synthetase
3769	 63.52	0	4400369..4401322	+	317	104783085	-	PSEEN4106	-	lipoprotein
3770	 61.22	0	4401353..4402417	-	354	104783086	dinP	PSEEN4107	-	DNA polymerase IV
3771	 67.42	0	4403389..4406031	+	880	104783087	-	PSEEN4110	-	hypothetical protein
3772	 66.28	0	4406031..4407323	+	430	104783088	-	PSEEN4111	-	hypothetical protein
3773	 64.57	0	4407411..4409321	-	636	104783089	trkD	PSEEN4112	-	Kup system potassium uptake protein
3774	 63.89	0	4409558..4410889	+	443	104783090	-	PSEEN4113	-	hypothetical protein
3775	 61.23	0	4410864..4411433	+	189	104783091	-	PSEEN4114	-	acyltransferase
3776	 67.37	0	4411555..4412265	+	236	104783092	-	PSEEN4116	-	hypothetical protein
3777	 59.74	0	4412316..4412777	+	153	104783093	-	PSEEN4117	-	hypothetical protein
3778	 63.36	0	4412784..4413479	+	231	104783094	-	PSEEN4118	-	hypothetical protein
3779	 61.03	0	4413615..4414394	-	259	104783095	fpr-1	PSEEN4119	-	ferredoxin--NADP+ reductase
3780	 62.14	0	4414515..4415441	+	308	104783096	-	PSEEN4120	-	LysR family transcriptional regulator
3781	 64.21	0	4415445..4415810	-	121	104783097	dgkA	PSEEN4121	-	diacylglycerol kinase
3782	 61.90	0	4415886..4416536	-	216	104783098	-	PSEEN4122	-	LuxR family DNA-binding response regulator
3783	 63.71	0	4416793..4417503	-	236	104783099	-	PSEEN4123	-	hypothetical protein
3784	 60.99	0	4417718..4418140	+	140	104783100	-	PSEEN4124	-	hypothetical protein
3785	 66.67	0	4418142..4418381	-	79	104783101	-	PSEEN4125	-	hypothetical protein
3786	 62.11	0	4418654..4419772	+	372	104783102	-	PSEEN4126	-	hypothetical protein
3787	 64.32	0	4419825..4420292	-	155	104783103	recX	PSEEN4127	-	recombination regulator RecX
3788	 63.20	0	4420301..4421368	-	355	104783104	recA	PSEEN4128	-	recombinase A
3789	 69.15	+1	4421473..4421955	-	160	104783105	-	PSEEN4129	-	hypothetical protein
3790	 68.06	0	4421997..4422497	-	166	104783106	-	PSEEN4130	-	phage protein
3791	 67.03	0	4422491..4423042	-	183	104783107	-	PSEEN4131	-	pyocin R2_PP, lytic enzyme
3792	 63.33	0	4423029..4423238	-	69	104783108	-	PSEEN4132	-	Mu-like phage translational regulator CoM
3793	 63.54	0	4423416..4423799	-	127	104783109	-	PSEEN4134	-	phage tail fiber assembly-like protein
3794	 62.32	0	4423809..4425095	-	428	104783110	-	PSEEN4135	-	Mu-like phage tail fiber protein
3795	 69.80	+1	4425038..4425643	-	201	104783111	-	PSEEN4136	-	hypothetical protein
3796	 70.61	+1	4425625..4426665	-	346	104783112	-	PSEEN4137	-	Mu-like phage protein gp47
3797	 67.42	0	4426655..4427053	-	132	104783113	-	PSEEN4138	-	Mu-like phage protein gp46
3798	 68.46	0	4427050..4427550	-	166	104783114	-	PSEEN4139	-	Mu-like phage assembly protein gp45
3799	 68.28	0	4427576..4428631	-	351	104783115	-	PSEEN4140	-	Mu-like phage tail protein gpP
3800	 69.59	+1	4428635..4429936	-	433	104783116	-	PSEEN4141	-	Mu-like phage DNA circulation protein
3801	 68.21	0	4429926..4431809	-	627	104783117	-	PSEEN4142	-	phage tail protein
3802	 63.54	0	4431809..4431904	-	31	104783118	-	PSEEN4143	-	phage protein
3803	 65.66	0	4431940..4432236	-	98	104783119	-	PSEEN4144	-	phage protein
3804	 63.22	0	4432233..4432580	-	115	104783120	-	PSEEN4145	-	phage tail tube protein
3805	 67.67	0	4432638..4434134	-	498	104783121	-	PSEEN4146	-	phage sheath protein
3806	 69.40	+1	4434134..4434316	-	60	104783122	-	PSEEN4147	-	Mu-like phage protein gp38
3807	 69.39	+1	4434313..4434900	-	195	104783123	-	PSEEN4148	-	phage protein
3808	 68.70	+1	4434957..4435991	-	344	104783124	-	PSEEN4149	-	pyocin R2_PP, tail formation GPD
3809	 66.67	0	4436011..4436184	-	57	104783125	-	PSEEN4150	-	pyocin R2_PP, tail component protein
3810	 68.09	0	4436192..4437037	-	281	104783126	-	PSEEN4151	-	pyocin R2_PP, tail formation protein gpU
3811	 65.29	0	4437050..4439158	-	702	104783127	-	PSEEN4152	-	pyocin R2_PP, tail length determination protein
3812	 66.34	0	4439284..4439586	-	100	104783128	-	PSEEN4153	-	hypothetical protein
3813	 62.35	0	4439599..4440108	-	169	104783129	-	PSEEN4154	-	pyocin R2_PP, tail tube protein GpFII
3814	 66.41	0	4440122..4441288	-	388	104783130	-	PSEEN4155	-	pyocin R2_PP, tail sheath protein gpFI
3815	 60.29	0	4441386..4441997	-	203	104783131	-	PSEEN4156	-	phage protein
3816	 62.20	0	4441918..4442655	+	245	104783132	-	PSEEN4157	-	phage protein
3817	 54.63	-2	4442745..4443176	-	143	104783133	-	PSEEN4158	-	phage protein
3818	 62.88	0	4443180..4445876	-	898	104783134	-	PSEEN4159	-	phage variable tail fibre protein
3819	 66.67	0	4445869..4446480	-	203	104783135	gpI	PSEEN4160	-	pyocin R2_PP, tail formation protein GpI
3820	 69.39	+1	4446482..4447363	-	293	104783136	gpJ	PSEEN4161	-	pyocin R2_PP, baseplate/tail fiber protein
3821	 70.95	+1	4447360..4447686	-	108	104783137	gpW	PSEEN4162	-	pyocin R2_PP, baseplate protein
3822	 69.35	+1	4447769..4448326	-	185	104783138	gpV	PSEEN4163	-	pyocin R2_PP
3823	 67.27	0	4448323..4448820	-	165	104783139	-	PSEEN4164	-	phage protein
3824	 60.87	0	4448940..4449284	-	114	104783140	-	PSEEN4165	-	hypothetical protein
3825	 61.12	0	4449292..4450590	-	432	104783141	-	PSEEN4166	-	phage protein
3826	 59.32	-1	4450798..4451178	-	126	104783142	-	PSEEN4167	-	phage tail fiber assembly protein
3827	 60.85	0	4451191..4452411	-	406	104783143	-	PSEEN4168	-	phage protein
3828	 58.46	-1	4452408..4452602	-	64	104783144	-	PSEEN4169	-	phage protein
3829	 57.03	-1	4452586..4452969	-	127	104783145	-	PSEEN4170	-	phage protein
3830	 64.30	0	4452969..4456946	-	1325	104783146	-	PSEEN4171	-	phage protein
3831	 66.67	0	4457005..4457193	-	62	104783147	-	PSEEN4172	-	hypothetical protein
3832	 66.07	0	4457207..4457539	-	110	104783148	-	PSEEN4173	-	hypothetical protein
3833	 63.79	0	4457539..4458546	-	335	104783149	-	PSEEN4174	-	hypothetical protein
3834	 66.83	0	4458569..4459180	-	203	104783150	-	PSEEN4175	-	phage tail protein
3835	 69.80	+1	4459247..4460011	-	254	104783151	-	PSEEN4176	-	phage protein; peptidase
3836	 66.13	0	4460015..4460764	-	249	104783152	-	PSEEN4177	-	phage tail protein
3837	 67.27	0	4460783..4461115	-	110	104783153	-	PSEEN4178	-	prophage LambdaSo, minor tail protein M
3838	 65.01	0	4461131..4462396	-	421	104783154	-	PSEEN4179	-	phage protein
3839	 66.67	0	4462463..4462717	-	84	104783155	-	PSEEN4180	-	phage protein
3840	 58.97	-1	4462747..4463097	-	116	104783156	-	PSEEN4181	-	hypothetical protein
3841	 65.24	0	4463112..4463603	-	163	104783157	-	PSEEN4182	-	phage major tail protein
3842	 66.67	0	4463689..4463871	-	60	104783158	-	PSEEN4183	-	phage protein
3843	 68.64	+1	4463886..4464239	-	117	104783159	-	PSEEN4184	-	pyocin R2_PP, holin
3844	 43.48	-2	4464500..4464637	-	45	104783160	-	PSEEN4185	-	hypothetical protein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.