IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3665	 68.28	0	4296403..4298445	-	680	104782981	-	PSEEN3994	-	hypothetical protein
3666	 39.74	-2	4298632..4298709	-	25	104782982	-	PSEEN3996	-	hypothetical protein
3667	 66.04	0	4298782..4299423	-	213	104782983	-	PSEEN3997	-	amino acid transporter LysE
3668	 69.25	+1	4299776..4300741	-	321	104782984	-	PSEEN3999	-	hypothetical protein
3669	 69.54	+1	4300832..4302187	+	451	104782985	-	PSEEN4000	-	GntR family transcriptional regulator
3670	 58.53	-1	4302368..4302625	-	85	104782986	-	PSEEN4001	-	hypothetical protein
3671	 67.53	0	4302916..4303377	+	153	104782987	-	PSEEN4002	-	acetyltransferase
3672	 64.25	0	4303332..4303868	-	178	104782988	def2	PSEEN4003	-	peptide deformylase
3673	 62.59	0	4303868..4304824	-	318	104782989	-	PSEEN4004	-	ribonuclease BN
3674	 63.33	0	4305031..4305210	-	59	104782990	-	PSEEN4005	-	hypothetical protein
3675	 66.67	0	4305455..4305835	+	126	104782991	-	PSEEN4006	-	hypothetical protein
3676	 62.72	0	4305836..4306672	-	278	104782992	-	PSEEN4007	-	hypothetical protein
3677	 67.14	0	4306793..4307641	+	282	104782993	-	PSEEN4008	-	lipoprotein
3678	 62.76	0	4307762..4309477	-	571	104782994	aceK	PSEEN4009	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
3679	 68.38	0	4309667..4310542	+	291	104782995	-	PSEEN4010	-	hypothetical protein
3680	 65.19	0	4310614..4311495	-	293	104782996	-	PSEEN4011	-	hypothetical protein
3681	 64.42	0	4311921..4312856	-	311	104782997	-	PSEEN4012	-	aspartyl/asparaginyl beta-hydroxylase
3682	 65.44	0	4313130..4314104	-	324	104782998	cysK	PSEEN4013	-	cysteine synthase A
3683	 64.07	0	4314380..4315225	+	281	104782999	-	PSEEN4014	-	AAA family ATPase
3684	 62.00	0	4315239..4316417	+	392	104783000	-	PSEEN4015	-	hypothetical protein
3685	 67.54	0	4316514..4317431	-	305	104783001	-	PSEEN4016	-	allophanate hydrolase subunit 2
3686	 66.52	0	4317428..4318117	-	229	104783002	-	PSEEN4017	-	allophanate hydrolase subunit 1
3687	 67.73	0	4318114..4318866	-	250	162139699	-	PSEEN4018	-	hypothetical protein
3688	 64.96	0	4318904..4320190	-	428	104783004	-	PSEEN4019	-	major facilitator transporter
3689	 65.24	0	4320320..4321231	+	303	104783005	-	PSEEN4020	-	LysR family transcriptional regulator
3690	 61.69	0	4321313..4321834	-	173	104783006	-	PSEEN4022	-	hypothetical protein
3691	 65.76	0	4321846..4322619	-	257	104783007	-	PSEEN4023	-	glutamine amidotransferase, class II
3692	 68.43	0	4322636..4323145	-	169	104783008	-	PSEEN4024	-	hypothetical protein
3693	 67.74	0	4323340..4325382	+	680	104783009	-	PSEEN4025	-	S9family peptidase
3694	 65.61	0	4325622..4326095	+	157	104783010	-	PSEEN4026	-	hypothetical protein
3695	 72.04	+1	4326092..4326370	-	92	104783011	-	PSEEN4027	-	hypothetical protein
3696	 64.48	0	4326503..4326868	+	121	104783012	-	PSEEN4028	-	hypothetical protein
3697	 64.93	0	4327009..4327410	+	133	104783013	-	PSEEN4029	-	hypothetical protein
3698	 64.68	0	4327486..4328694	-	402	104783014	-	PSEEN4030	-	hypothetical protein
3699	 63.11	0	4328744..4329193	-	149	104783015	-	PSEEN4031	-	hypothetical protein
3700	 66.84	0	4329340..4329933	+	197	104783016	-	PSEEN4032	-	nitroreductase
3701	 67.63	0	4329998..4330930	-	310	104783017	-	PSEEN4033	-	D-isomer specific 2-hydroxyacid dehydrogenase
3702	 63.27	0	4331003..4331296	-	97	104783018	-	PSEEN4034	-	hypothetical protein
3703	 66.49	0	4331293..4332426	-	377	104783019	rnd	PSEEN4035	-	ribonuclease D, processes tRNA
3704	 62.09	0	4332527..4334164	-	545	104783020	-	PSEEN4036	-	transmembrane sulfatase
3705	 61.75	0	4334327..4334692	-	121	104783021	-	PSEEN4037	-	5-carboxymethyl-2-hydroxymuconate delta isomerase
3706	 59.92	0	4334810..4335046	+	78	104783022	-	PSEEN4038	-	hypothetical protein
3707	 65.99	0	4335129..4336304	-	391	104783023	-	PSEEN4039	-	cystathionine gamma-synthase
3708	 61.87	0	4336457..4336915	+	152	104783024	-	PSEEN4041	-	transcriptional regulator, AsnC familiy
3709	 66.07	0	4337040..4339367	-	775	104783025	-	PSEEN4042	-	molybdopterin oxidoreductase, alpha subunit
3710	 65.57	0	4339623..4340627	+	334	104783026	moaA	PSEEN4043	-	molybdenum cofactor biosynthesis protein A
3711	 63.11	0	4340649..4341548	+	299	104783027	-	PSEEN4044	-	hypothetical protein
3712	 64.63	0	4341624..4342163	-	179	104783028	moaB-2	PSEEN4045	-	molybdopterin biosynthesis protein B
3713	 64.08	0	4342368..4343255	+	295	104783029	-	PSEEN4046	-	LysR family transcriptional regulator
3714	 62.58	0	4343243..4344025	-	260	104783030	-	PSEEN4047	-	AraC family transcriptional regulator
3715	 65.74	0	4344377..4345993	+	538	104783031	-	PSEEN4049	-	amino acid transporter
3716	 67.53	0	4346105..4347031	+	308	104783032	-	PSEEN4050	-	proline racemase
3717	 67.62	0	4347073..4348020	+	315	104783033	-	PSEEN4051	-	dihydrodipicolinate synthase
3718	 68.94	+1	4348173..4349753	+	526	104783034	-	PSEEN4052	-	ketoglutarate semialdehyde dehydrogenase
3719	 67.07	0	4349750..4350994	+	414	104783035	-	PSEEN4053	-	D-amino acid dehydrogenase, small subunit family protein
3720	 67.49	0	4351074..4352165	-	363	104783036	xenA	PSEEN4054	-	xenobiotic reductase A
3721	 60.71	0	4352217..4352552	+	111	104783037	-	PSEEN4055	-	ArsR family transcriptional regulator
3722	 62.39	0	4352821..4354458	-	545	104783038	mqo-2	PSEEN4056	-	malate:quinone oxidoreductase
3723	 54.17	-2	4354806..4354997	-	63	104783039	-	PSEEN4057	-	hypothetical protein
3724	 57.38	-1	4355725..4355961	+	78	104783040	-	PSEEN4058	-	hypothetical protein
3725	 53.61	-2	4355994..4356284	+	96	104783041	-	PSEEN4059	-	hypothetical protein
3726	 57.14	-1	4356601..4357083	+	160	104783042	-	PSEEN4060	-	hypothetical protein
3727	 60.06	0	4357363..4358073	-	236	104783043	purC	PSEEN4061	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3728	 64.43	0	4358103..4358861	-	252	104783044	-	PSEEN4062	-	beta-lactamase-like
3729	 66.58	0	4358862..4359977	-	371	104783045	-	PSEEN4063	-	lipoprotein
3730	 60.92	0	4359995..4360882	-	295	104783046	dapA	PSEEN4064	-	dihydrodipicolinate synthase
3731	 66.84	0	4361142..4361702	+	186	104783047	-	PSEEN4066	-	glycine cleavage system transcriptional repressor
3732	 64.14	0	4361713..4362186	+	157	104783048	-	PSEEN4067	-	hypothetical protein
3733	 62.84	0	4362260..4363330	-	356	104783049	-	PSEEN4068	-	PerM family permease
3734	 66.25	0	4363351..4363590	-	79	104783050	-	PSEEN4069	-	hypothetical protein
3735	 65.41	0	4363697..4365133	+	478	104783051	-	PSEEN4070	-	M48 family peptidase
3736	 63.55	0	4365248..4366306	-	352	104783052	nadA	PSEEN4071	-	quinolinate synthetase
3737	 63.30	0	4366560..4368074	-	504	104783053	-	PSEEN4072	-	hypothetical protein
3738	 64.23	0	4368745..4370097	+	450	104783054	-	PSEEN4074	-	amino acid transporter
3739	 67.68	0	4370164..4372230	+	688	104783055	-	PSEEN4075	-	methyl-accepting chemotaxis transducer
3740	 61.29	0	4372460..4374226	+	588	104783056	-	PSEEN4076	-	hypothetical protein
3741	 63.35	0	4374314..4374946	-	210	104783057	-	PSEEN4077	-	chloramphenicol acetyltransferase
3742	 60.23	0	4374981..4375865	-	294	104783058	-	PSEEN4078	-	glycosyl transferase MigA
3743	 67.11	0	4376025..4377374	-	449	104783059	-	PSEEN4079	-	TolC family type I secretion outer membrane protein
3744	 64.55	0	4377371..4379497	-	708	104783060	-	PSEEN4080	-	type I toxin efflux ATP-binding membrane protein
3745	 65.63	0	4379494..4380750	-	418	104783061	-	PSEEN4081	-	Type I secretion system membrane fusion protein, HlyD
3746	 59.66	0	4380843..4381199	+	118	104783062	-	PSEEN4082	-	hypothetical protein
3747	 64.15	0	4381460..4382134	-	224	104783063	-	PSEEN4083	-	hypothetical protein
3748	 64.04	0	4382145..4382792	-	215	104783064	-	PSEEN4084	-	radical activating enzyme
3749	 63.09	0	4382953..4383762	-	269	104783065	-	PSEEN4085	-	hypothetical protein
3750	 58.84	-1	4383769..4384266	-	165	104783066	pal	PSEEN4086	-	peptidoglycan-associated lipoprotein precursor
3751	 60.91	0	4384320..4385621	-	433	104783067	tolB	PSEEN4087	-	translocation protein TolB
3752	 60.63	0	4385618..4386694	-	358	104783068	tolA	PSEEN4088	-	biopolymer transport protein TolA
3753	 59.38	-1	4386694..4387146	-	150	104783069	tolR	PSEEN4089	-	biopolymer transport protein TolR
3754	 64.37	0	4387161..4387856	-	231	104783070	tolQ	PSEEN4090	-	biopolymer transport protein TolQ
3755	 62.47	0	4387859..4388311	-	150	104783071	-	PSEEN4091	-	thioesterase
3756	 66.09	0	4388437..4389483	-	348	104783072	ruvB	PSEEN4092	-	Holliday junction DNA helicase B
3757	 63.92	0	4389480..4390097	-	205	104783073	ruvA	PSEEN4093	-	Holliday junction DNA helicase motor protein
3758	 66.29	0	4390206..4390730	-	174	104783074	ruvC	PSEEN4094	-	Holliday junction resolvase
3759	 63.08	0	4390853..4391605	-	250	104783075	-	PSEEN4095	-	hypothetical protein
3760	 63.57	0	4391717..4393492	-	591	104783076	aspS	PSEEN4096	-	aspartyl-tRNA synthetase
3761	 62.16	0	4393587..4393808	-	73	104783077	-	PSEEN4097	-	hypothetical protein
3762	 64.90	0	4393901..4394239	-	112	104783078	-	PSEEN4098	-	hypothetical protein
3763	 59.70	0	4394424..4394897	-	157	104783079	-	PSEEN4099	-	Dps family DNA-binding stress response protein
3764	 65.65	0	4395143..4395733	+	196	104783080	-	PSEEN4100	-	cold shock protein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.