IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
319	 70.74	+1	371242..372786	-	514	104779635	-	PSEEN0356	-	phenylalanine/histidine ammonia-lyase
320	 68.80	+1	372767..373705	-	312	104779636	-	PSEEN0357	-	hypothetical protein
321	 66.94	0	373702..374436	-	244	104779637	-	PSEEN0358	-	glycosyl transferase family protein
322	 70.50	+1	374429..376099	-	556	104779638	-	PSEEN0359	-	AMP-binding enzyme
323	 69.41	+1	376096..376641	-	181	104779639	-	PSEEN0360	-	hypothetical protein
324	 60.39	0	376638..376892	-	84	104779640	-	PSEEN0361	-	acyl carrier protein
325	 63.37	0	376902..377174	-	90	104779641	-	PSEEN0362	-	acyl carrier protein
326	 68.25	0	377143..377961	-	272	104779642	-	PSEEN0363	-	acyltransferase
327	 66.94	0	377937..378659	-	240	104779643	-	PSEEN0364	-	hypothetical protein
328	 60.47	0	378977..379750	+	257	104779644	-	PSEEN0365	-	ParA family chromosome partitioning ATPase
329	 55.99	-1	379825..380133	+	102	104779645	-	PSEEN0366	-	hypothetical protein
330	 53.50	-2	380123..380479	+	118	104779646	-	PSEEN0367	-	hypothetical protein
331	 67.59	0	380498..380932	-	144	104779647	-	PSEEN0368	-	thioredoxin
332	 65.98	0	381033..382493	-	486	104779648	-	PSEEN0369	-	hypothetical protein
333	 65.28	0	382649..385957	-	1102	104779649	-	PSEEN0370	-	potassium efflux protein KefA
334	 65.98	0	385995..387737	-	580	104779650	cvrA	PSEEN0371	-	potassium/proton antiporter
335	 65.31	0	387970..389667	-	565	104779651	betA	PSEEN0372	-	choline dehydrogenase
336	 64.02	0	389745..391217	-	490	104779652	betB	PSEEN0373	-	betaine aldehyde dehydrogenase
337	 61.64	0	391256..391912	-	218	104779653	betI	PSEEN0374	-	transcriptional regulator BetI
338	 64.27	0	392392..394395	+	667	104779654	betT	PSEEN0375	-	choline transporter BetT
339	 63.21	0	394530..399182	+	1550	104779655	-	PSEEN0376	-	hypothetical protein
340	 68.24	0	399270..400034	-	254	104779656	-	PSEEN0377	-	hypothetical protein
341	 66.37	0	400044..401375	-	443	104779657	ctpA	PSEEN0378	-	carboxy-terminal processing protease precursor
342	 64.90	0	401464..402762	-	432	104779658	-	PSEEN0379	-	M23/M37 family metalloendopeptidase
343	 65.43	0	402949..404484	-	511	104779659	gpmA	PSEEN0380	-	phosphoglyceromutase
344	 61.11	0	404691..405104	+	137	104779660	-	PSEEN0381	-	hypothetical protein
345	 64.71	0	405106..405360	+	84	104779661	grxC	PSEEN0382	-	glutaredoxin
346	 62.53	0	405400..405882	+	160	104779662	secB	PSEEN0383	-	preprotein translocase subunit SecB
347	 65.37	0	405999..406460	-	153	104779663	-	PSEEN0384	-	RNA methyltransferase
348	 65.75	0	406459..406896	+	145	104779664	-	PSEEN0385	-	hypothetical protein
349	 67.29	0	407274..408710	-	478	104779665	ntrC	PSEEN0386	-	two-component response regulator NtrC
350	 65.10	0	408707..409792	-	361	104779666	ntrB	PSEEN0387	-	sensory box histidine kinase NtrB
351	 66.85	0	410046..410585	-	179	104779667	-	PSEEN0389	-	chorismate mutase
352	 60.48	0	410738..412144	-	468	104779668	glnA	PSEEN0390	-	glutamine synthetase type I
353	 61.79	0	412661..414115	+	484	104779669	thiI	PSEEN0391	-	thiamine biosynthesis protein ThiI
354	 60.02	0	414244..416064	+	606	104779670	typA	PSEEN0392	-	regulatory protein TypA
355	 65.62	0	416310..418118	-	602	104779671	-	PSEEN0393	-	prolyl oligopeptidase
356	 64.25	0	418099..419217	-	372	104779672	pqqE	PSEEN0394	-	pyrroloquinoline quinone biosynthesis protein PqqE
357	 62.68	0	419219..419494	-	91	104779673	pqqD	PSEEN0395	-	pyrroloquinoline quinone biosynthesis protein PqqD
358	 67.59	0	419491..420246	-	251	104779674	pqqC	PSEEN0396	-	pyrroloquinoline quinone biosynthesis protein PqqC
359	 65.79	0	420271..421182	-	303	104779675	pqqB	PSEEN0397	-	pyrroloquinoline quinone biosynthesis protein PqqB
360	 52.78	-2	421256..421327	-	23	104779676	pqqA	PSEEN0398	-	coenzyme PQQ synthesis protein PqqA
361	 65.68	0	421474..423810	-	778	104779677	pqqF	PSEEN0399	-	coenzyme PQQ synthesis protein F
362	 63.65	0	423983..424777	-	264	104779678	-	PSEEN0400	-	amidohydrolase
363	 65.30	0	424794..426476	-	560	104779679	-	PSEEN0401	-	amino oxydase
364	 61.59	0	426639..426953	-	104	104779680	-	PSEEN0403	-	hypothetical protein
365	 64.26	0	427496..427786	+	96	104779681	-	PSEEN0406	-	hypothetical protein
366	 66.67	0	427805..428266	-	153	104779682	-	PSEEN0407	-	AsnC family transcriptional regulator
367	 58.24	-1	428564..429121	+	185	104779683	-	PSEEN0409	-	hypothetical protein
368	 64.20	0	429674..430810	+	378	104779684	-	PSEEN0410	-	hypothetical protein
369	 66.51	0	430810..431430	+	206	104779685	prfH	PSEEN0411	-	peptide chain release factor-like protein
370	 64.18	0	431707..435450	-	1247	104779686	-	PSEEN0412	-	sensory box protein
371	 62.07	0	435570..437420	-	616	104779687	rpoD	PSEEN0413	-	RNA polymerase sigma factor RpoD
372	 62.68	0	437488..439470	-	660	104779688	dnaG	PSEEN0414	-	DNA primase
373	 57.41	-1	439750..439965	-	71	104779689	rpsU	PSEEN0416	-	30S ribosomal protein S21
374	 64.52	0	440171..441196	+	341	104779690	gcp	PSEEN0417	-	O-sialoglycoprotein endopeptidase
375	 65.26	0	441217..441786	-	189	104779691	-	PSEEN0418	-	putative glycerol-3-phosphate acyltransferase PlsY
376	 63.03	0	441861..442217	+	118	104779692	folB	PSEEN0419	-	dihydroneopterin aldolase
377	 61.96	0	442208..442717	+	169	104779693	-	PSEEN0420	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
378	 63.74	0	442786..443913	-	375	104779694	cca	PSEEN0421	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
379	 60.61	0	443968..445536	-	522	104779695	-	PSEEN0422	-	hypothetical protein
380	 60.69	0	445533..446804	-	423	104779696	-	PSEEN0423	-	hypothetical protein
381	 57.93	-1	446924..448846	-	640	104779697	-	PSEEN0424	-	serine protein kinase
382	 64.85	0	449132..449461	-	109	104779698	glpE	PSEEN0425	-	thiosulfate sulfurtransferase
383	 64.45	0	449475..450332	-	285	104779699	apaH	PSEEN0426	-	diadenosine tetraphosphatase
384	 63.78	0	450332..450712	-	126	104779700	apaG	PSEEN0427	-	ApaG
385	 65.79	0	450851..451651	-	266	104779701	ksgA	PSEEN0428	-	dimethyladenosine transferase
386	 68.55	0	451648..452658	-	336	104779702	pdxA	PSEEN0429	-	4-hydroxythreonine-4-phosphate dehydrogenase
387	 64.39	0	452655..453974	-	439	104779703	-	PSEEN0430	-	peptidyl-prolyl cis-trans isomerase A
388	 60.14	0	453955..456789	-	944	104779704	-	PSEEN0431	-	organic solvent tolerance protein precursor OstA
389	 64.51	0	456922..457941	+	339	104779705	-	PSEEN0432	-	phosphotransferase
390	 65.48	0	457938..458609	+	223	104779706	-	PSEEN0433	-	nucleotidyltransferase
391	 68.89	+1	458611..459375	+	254	104779707	-	PSEEN0434	-	DnaJ-like co-chaperone
392	 66.77	0	459560..460558	-	332	104779708	-	PSEEN0435	-	hypothetical protein
393	 65.58	0	460654..463041	+	795	104779709	-	PSEEN0436	-	sensory box histidine kinase
394	 66.03	0	463054..463683	+	209	104779710	-	PSEEN0437	-	LuxR family DNA-binding response regulator
395	 65.78	0	463964..465085	+	373	104779711	-	PSEEN0438	-	polyamine ABC transporter, ATP-binding protein
396	 62.51	0	465126..466160	+	344	104779712	-	PSEEN0439	-	polyamine ABC transporter, periplasmic polyamine-binding protein
397	 64.26	0	466255..467502	+	415	104779713	-	PSEEN0440	-	polyamine ABC transporter, permease protein
398	 64.01	0	467514..468341	+	275	104779714	-	PSEEN0441	-	polyamine ABC transporter, permease protein
399	 64.30	0	468532..469206	+	224	104779715	rpe	PSEEN0442	-	ribulose-phosphate 3-epimerase
400	 64.10	0	469203..470021	+	272	104779716	gph	PSEEN0443	-	phosphoglycolate phosphatase
401	 63.35	0	470092..471570	+	492	104779717	trpE	PSEEN0444	-	anthranilate synthase component I
402	 66.40	0	471754..473655	-	633	104779718	estA	PSEEN0445	-	esterase estA precursor
403	 57.58	-1	473789..473887	+	32	104779719	-	PSEEN0446	-	hypothetical protein
404	 61.78	0	474033..474626	+	197	104779720	trpG	PSEEN0447	-	anthranilate synthase component II
405	 64.29	0	474636..475685	+	349	104779721	trpD	PSEEN0448	-	anthranilate phosphoribosyltransferase
406	 62.01	0	475682..476518	+	278	104779722	trpC	PSEEN0449	-	indole-3-glycerol-phosphate synthase
407	 65.11	0	476684..477388	+	234	104779723	-	PSEEN0450	-	hypothetical protein
408	 61.40	0	477385..478029	-	214	104779724	vfr	PSEEN0451	-	cAMP-regulatory protein
409	 62.88	0	478219..478641	+	140	104779725	-	PSEEN0452	-	hypothetical protein
410	 59.05	-1	478662..479081	-	139	104779726	-	PSEEN0453	-	hypothetical protein
411	 62.43	0	479090..480127	-	345	104779727	-	PSEEN0454	-	hypothetical protein
412	 63.27	0	480138..480785	-	215	104779728	-	PSEEN0455	-	ubiquinone biosynthesis protein COQ7
413	 59.88	0	480851..481189	-	112	104779729	-	PSEEN0456	-	hypothetical protein
414	 64.99	0	481254..482027	-	257	104779730	-	PSEEN0457	-	short chain dehydrogenase/reductase family oxidoreductase
415	 64.26	0	482079..483035	-	318	104779731	-	PSEEN0458	-	dioxygenases related to 2-nitropropane dioxygenase
416	 61.20	0	483066..483431	-	121	104779732	-	PSEEN0459	-	hypothetical protein
417	 65.99	0	483632..484666	+	344	104779733	argC	PSEEN0460	-	N-acetyl-gamma-glutamyl-phosphate reductase
418	 59.83	0	484812..485162	+	116	104779734	-	PSEEN0461	-	iron-sulfur cluster insertion protein ErpA
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.