IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3620	 56.27	-1	4235630..4235908	+	92	104782936	-	PSEEN3943	-	IS3 family transposase
3621	 54.92	-2	4235947..4236780	+	277	104782937	-	PSEEN3944	-	IS3 family transposase
3622	 36.81	-2	4236904..4237248	-	114	104782938	-	PSEEN3945	-	hypothetical protein
3623	 65.03	0	4237290..4248881	-	3863	104782939	-	PSEEN3946	-	filamentous hemagglutinin
3624	 66.73	0	4248905..4250614	-	569	104782940	-	PSEEN3947	-	secretion protein, TPS system
3625	 61.11	0	4250804..4251073	+	89	104782941	-	PSEEN3948	-	hypothetical protein
3626	 62.34	0	4251076..4251306	-	76	104782942	-	PSEEN3949	-	hypothetical protein
3627	 59.57	-1	4251281..4251562	-	93	104782943	-	PSEEN3950	-	hypothetical protein
3628	 63.08	0	4251749..4253113	-	454	104782944	-	PSEEN3951	-	DEAD-box ATP dependent DNA helicase
3629	 65.35	0	4253218..4254510	+	430	104782945	-	PSEEN3952	-	transporter with mechanosensitive ion channel.
3630	 66.27	0	4254516..4256030	+	504	104782946	-	PSEEN3953	-	major facilitator transporter
3631	 67.25	0	4256071..4257273	+	400	104782947	-	PSEEN3954	-	aminotransferase
3632	 63.95	0	4257326..4258135	+	269	104782948	-	PSEEN3955	-	hypothetical protein
3633	 64.65	0	4258163..4259053	+	296	104782949	-	PSEEN3956	-	phosphoenolpyruvate mutase
3634	 67.80	0	4259102..4259986	-	294	104782950	-	PSEEN3957	-	LysR family transcriptional regulator
3635	 65.31	0	4260145..4261026	-	293	104782951	-	PSEEN3958	-	transport protein
3636	 64.67	0	4261447..4262046	-	199	104782952	-	PSEEN3959	-	acyl carrier protein phosphodiesterase
3637	 60.95	0	4262157..4262471	-	104	104782953	-	PSEEN3960	-	hypothetical protein
3638	 68.83	+1	4262522..4263445	+	307	104782954	-	PSEEN3961	-	LysR family transcriptional regulator
3639	 65.44	0	4263459..4264271	+	270	104782955	-	PSEEN3962	-	alpha/beta fold family hydrolase
3640	 60.22	0	4264265..4264822	+	185	104782956	ppiA	PSEEN3963	-	peptidyl-prolyl cis-trans isomerase A (rotamase A)
3641	 65.30	0	4264874..4266706	+	610	104782957	-	PSEEN3964	-	ABC transporter, ATP-binding protein/permease protein
3642	 65.87	0	4266778..4267905	-	375	104782958	-	PSEEN3965	-	hypothetical protein
3643	 62.97	0	4268145..4269389	+	414	104782959	-	PSEEN3966	-	hypothetical protein
3644	 65.06	0	4269569..4270690	-	373	104782960	-	PSEEN3967	-	3-oxoacyl-(acyl carrier protein) synthase III
3645	 67.20	0	4270948..4274853	-	1301	104782961	hrpA	PSEEN3969	-	ATP-dependent helicase
3646	 67.22	0	4275091..4275270	+	59	104782962	-	PSEEN3970	-	hypothetical protein
3647	 68.94	+1	4275354..4276718	+	454	104782963	-	PSEEN3971	-	glutamine synthetase
3648	 67.43	0	4276747..4278054	+	435	104782964	-	PSEEN3972	-	oxidoreductase
3649	 62.84	0	4278215..4279912	-	565	104782965	fadD	PSEEN3973	-	acyl-CoA synthetase
3650	 65.01	0	4280327..4282015	-	562	104782966	fadD2	PSEEN3975	-	acyl-CoA synthetase
3651	 67.41	0	4282219..4283163	+	314	104782967	-	PSEEN3976	-	alpha/beta fold family hydrolase
3652	 63.48	0	4283197..4283667	+	156	104782968	phaJ1	PSEEN3977	-	enoyl-CoA hydratase, R-specific
3653	 69.81	+1	4283709..4284947	-	412	104782969	-	PSEEN3978	-	ECF subfamily RNA polymerase sigma factor
3654	 67.90	0	4284947..4285432	-	161	104782970	-	PSEEN3979	-	hypothetical protein
3655	 67.54	0	4285454..4285798	-	114	104782971	-	PSEEN3980	-	hypothetical protein
3656	 64.55	0	4285841..4286266	-	141	104782972	-	PSEEN3981	-	hypothetical protein
3657	 68.87	+1	4286372..4286824	-	150	104782973	-	PSEEN3982	-	aminoglycoside N(6')-acetyltransferase
3658	 68.07	0	4286821..4287318	-	165	104782974	-	PSEEN3983	-	transcriptional regulator
3659	 43.79	-2	4287780..4288496	-	238	104782975	-	PSEEN3985	-	hypothetical protein
3660	 43.14	-2	4288684..4289346	-	220	104782976	-	PSEEN3987	-	hypothetical protein
3661	 44.21	-2	4289684..4289968	-	94	104782977	-	PSEEN3990	-	hypothetical protein
3662	 43.65	-2	4290091..4290846	-	251	104782978	-	PSEEN3991	-	hypothetical protein
3663	 66.67	0	4290862..4295676	-	1604	104782979	-	PSEEN3992	-	hypothetical protein
3664	 69.64	+1	4295673..4296413	-	246	104782980	-	PSEEN3993	-	hypothetical protein
3665	 68.28	0	4296403..4298445	-	680	104782981	-	PSEEN3994	-	hypothetical protein
3666	 39.74	-2	4298632..4298709	-	25	104782982	-	PSEEN3996	-	hypothetical protein
3667	 66.04	0	4298782..4299423	-	213	104782983	-	PSEEN3997	-	amino acid transporter LysE
3668	 69.25	+1	4299776..4300741	-	321	104782984	-	PSEEN3999	-	hypothetical protein
3669	 69.54	+1	4300832..4302187	+	451	104782985	-	PSEEN4000	-	GntR family transcriptional regulator
3670	 58.53	-1	4302368..4302625	-	85	104782986	-	PSEEN4001	-	hypothetical protein
3671	 67.53	0	4302916..4303377	+	153	104782987	-	PSEEN4002	-	acetyltransferase
3672	 64.25	0	4303332..4303868	-	178	104782988	def2	PSEEN4003	-	peptide deformylase
3673	 62.59	0	4303868..4304824	-	318	104782989	-	PSEEN4004	-	ribonuclease BN
3674	 63.33	0	4305031..4305210	-	59	104782990	-	PSEEN4005	-	hypothetical protein
3675	 66.67	0	4305455..4305835	+	126	104782991	-	PSEEN4006	-	hypothetical protein
3676	 62.72	0	4305836..4306672	-	278	104782992	-	PSEEN4007	-	hypothetical protein
3677	 67.14	0	4306793..4307641	+	282	104782993	-	PSEEN4008	-	lipoprotein
3678	 62.76	0	4307762..4309477	-	571	104782994	aceK	PSEEN4009	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
3679	 68.38	0	4309667..4310542	+	291	104782995	-	PSEEN4010	-	hypothetical protein
3680	 65.19	0	4310614..4311495	-	293	104782996	-	PSEEN4011	-	hypothetical protein
3681	 64.42	0	4311921..4312856	-	311	104782997	-	PSEEN4012	-	aspartyl/asparaginyl beta-hydroxylase
3682	 65.44	0	4313130..4314104	-	324	104782998	cysK	PSEEN4013	-	cysteine synthase A
3683	 64.07	0	4314380..4315225	+	281	104782999	-	PSEEN4014	-	AAA family ATPase
3684	 62.00	0	4315239..4316417	+	392	104783000	-	PSEEN4015	-	hypothetical protein
3685	 67.54	0	4316514..4317431	-	305	104783001	-	PSEEN4016	-	allophanate hydrolase subunit 2
3686	 66.52	0	4317428..4318117	-	229	104783002	-	PSEEN4017	-	allophanate hydrolase subunit 1
3687	 67.73	0	4318114..4318866	-	250	162139699	-	PSEEN4018	-	hypothetical protein
3688	 64.96	0	4318904..4320190	-	428	104783004	-	PSEEN4019	-	major facilitator transporter
3689	 65.24	0	4320320..4321231	+	303	104783005	-	PSEEN4020	-	LysR family transcriptional regulator
3690	 61.69	0	4321313..4321834	-	173	104783006	-	PSEEN4022	-	hypothetical protein
3691	 65.76	0	4321846..4322619	-	257	104783007	-	PSEEN4023	-	glutamine amidotransferase, class II
3692	 68.43	0	4322636..4323145	-	169	104783008	-	PSEEN4024	-	hypothetical protein
3693	 67.74	0	4323340..4325382	+	680	104783009	-	PSEEN4025	-	S9family peptidase
3694	 65.61	0	4325622..4326095	+	157	104783010	-	PSEEN4026	-	hypothetical protein
3695	 72.04	+1	4326092..4326370	-	92	104783011	-	PSEEN4027	-	hypothetical protein
3696	 64.48	0	4326503..4326868	+	121	104783012	-	PSEEN4028	-	hypothetical protein
3697	 64.93	0	4327009..4327410	+	133	104783013	-	PSEEN4029	-	hypothetical protein
3698	 64.68	0	4327486..4328694	-	402	104783014	-	PSEEN4030	-	hypothetical protein
3699	 63.11	0	4328744..4329193	-	149	104783015	-	PSEEN4031	-	hypothetical protein
3700	 66.84	0	4329340..4329933	+	197	104783016	-	PSEEN4032	-	nitroreductase
3701	 67.63	0	4329998..4330930	-	310	104783017	-	PSEEN4033	-	D-isomer specific 2-hydroxyacid dehydrogenase
3702	 63.27	0	4331003..4331296	-	97	104783018	-	PSEEN4034	-	hypothetical protein
3703	 66.49	0	4331293..4332426	-	377	104783019	rnd	PSEEN4035	-	ribonuclease D, processes tRNA
3704	 62.09	0	4332527..4334164	-	545	104783020	-	PSEEN4036	-	transmembrane sulfatase
3705	 61.75	0	4334327..4334692	-	121	104783021	-	PSEEN4037	-	5-carboxymethyl-2-hydroxymuconate delta isomerase
3706	 59.92	0	4334810..4335046	+	78	104783022	-	PSEEN4038	-	hypothetical protein
3707	 65.99	0	4335129..4336304	-	391	104783023	-	PSEEN4039	-	cystathionine gamma-synthase
3708	 61.87	0	4336457..4336915	+	152	104783024	-	PSEEN4041	-	transcriptional regulator, AsnC familiy
3709	 66.07	0	4337040..4339367	-	775	104783025	-	PSEEN4042	-	molybdopterin oxidoreductase, alpha subunit
3710	 65.57	0	4339623..4340627	+	334	104783026	moaA	PSEEN4043	-	molybdenum cofactor biosynthesis protein A
3711	 63.11	0	4340649..4341548	+	299	104783027	-	PSEEN4044	-	hypothetical protein
3712	 64.63	0	4341624..4342163	-	179	104783028	moaB-2	PSEEN4045	-	molybdopterin biosynthesis protein B
3713	 64.08	0	4342368..4343255	+	295	104783029	-	PSEEN4046	-	LysR family transcriptional regulator
3714	 62.58	0	4343243..4344025	-	260	104783030	-	PSEEN4047	-	AraC family transcriptional regulator
3715	 65.74	0	4344377..4345993	+	538	104783031	-	PSEEN4049	-	amino acid transporter
3716	 67.53	0	4346105..4347031	+	308	104783032	-	PSEEN4050	-	proline racemase
3717	 67.62	0	4347073..4348020	+	315	104783033	-	PSEEN4051	-	dihydrodipicolinate synthase
3718	 68.94	+1	4348173..4349753	+	526	104783034	-	PSEEN4052	-	ketoglutarate semialdehyde dehydrogenase
3719	 67.07	0	4349750..4350994	+	414	104783035	-	PSEEN4053	-	D-amino acid dehydrogenase, small subunit family protein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.