IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3054	 67.89	0	3581683..3582582	+	299	104782370	-	PSEEN3323	-	LysR family transcriptional regulator
3055	 66.19	0	3582779..3583831	-	350	104782371	-	PSEEN3324	-	hypothetical protein
3056	 64.86	0	3583858..3584409	-	183	104782372	-	PSEEN3325	-	isochorismatase superfamily hydrolase
3057	 60.50	0	3584466..3585794	-	442	104782373	-	PSEEN3326	-	hypothetical protein
3058	 55.59	-1	3585821..3586750	-	309	104782374	-	PSEEN3327	-	hypothetical protein
3059	 66.52	0	3586828..3587517	-	229	104782375	-	PSEEN3328	-	thioesterase involved in non-ribosomal peptide biosynthesis
3060	 61.26	0	3587568..3587789	-	73	104782376	-	PSEEN3329	-	hypothetical protein
3061	 68.12	0	3587962..3588579	+	205	104782377	-	PSEEN3330	-	amino acid transporter LysE
3062	 68.66	+1	3588585..3588986	-	133	104782378	-	PSEEN3331	-	hypothetical protein
3063	 68.54	0	3589042..3595380	-	2112	104782379	-	PSEEN3332	-	non-ribosomal peptide synthetase
3064	 64.62	0	3595809..3596588	+	259	104782380	-	PSEEN3335	-	LuxR family transcriptional regulator
3065	 70.09	+1	3596605..3598035	+	476	104782381	oprM	PSEEN3336	-	Outer membrane protein oprM precursor
3066	 71.71	+1	3598005..3598757	-	250	104782382	-	PSEEN3337	-	transcriptional regulator
3067	 67.31	0	3598943..3599560	+	205	104782383	-	PSEEN3338	-	hypothetical protein
3068	 65.67	0	3599576..3600076	+	166	104782384	-	PSEEN3339	-	hypothetical protein
3069	 68.13	0	3600153..3600767	-	204	104782385	-	PSEEN3340	-	amino acid transporter LysE
3070	 64.46	0	3600881..3601333	+	150	104782386	-	PSEEN3341	-	AsnC family transcriptional regulator
3071	 65.32	0	3601722..3603134	+	470	104782387	-	PSEEN3342	-	NCS1 nucleoside transporter
3072	 67.24	0	3603238..3604467	-	409	104782388	-	PSEEN3343	-	acyl-CoA dehydrogenase
3073	 66.77	0	3604608..3605534	+	308	104782389	-	PSEEN3344	-	LysR family transcriptional regulator
3074	 63.11	0	3605678..3605986	+	102	104782390	-	PSEEN3345	-	hypothetical protein
3075	 68.26	0	3606118..3607245	+	375	104782391	-	PSEEN3346	-	hypothetical protein
3076	 65.83	0	3607247..3607726	+	159	104782392	-	PSEEN3347	-	hypothetical protein
3077	 67.41	0	3607835..3609052	+	405	104782393	iscS-2	PSEEN3349	-	cysteine desulfurase
3078	 60.61	0	3609177..3609374	-	65	104782394	-	PSEEN3350	-	hypothetical protein
3079	 65.28	0	3609396..3609539	-	47	104782395	-	PSEEN3351	-	hypothetical protein
3080	 68.25	0	3609642..3610526	-	294	104782396	-	PSEEN3352	-	LysR family transcriptional regulator
3081	 66.35	0	3610628..3611584	+	318	104782397	-	PSEEN3353	-	hypothetical protein
3082	 66.53	0	3611702..3612421	-	239	104782398	-	PSEEN3354	-	hypothetical protein
3083	 63.91	0	3612414..3613247	-	277	104782399	-	PSEEN3355	-	hypothetical protein
3084	 64.85	0	3613315..3613809	-	164	104782400	-	PSEEN3356	-	hypothetical protein
3085	 66.49	0	3614061..3614621	-	186	104782401	-	PSEEN3357	-	hypothetical protein
3086	 65.77	0	3614829..3619304	-	1491	104782402	-	PSEEN3358	-	hypothetical protein
3087	 65.25	0	3619574..3620911	+	445	104782403	-	PSEEN3359	-	UDP-glucose dehydrogenase
3088	 65.28	0	3620899..3621909	+	336	104782404	-	PSEEN3360	-	UDP-glucuronate 5'-epimerase
3089	 67.35	0	3621910..3622641	+	243	104782405	-	PSEEN3361	-	glycosyl transferase family protein
3090	 62.27	0	3622638..3622910	+	90	104782406	-	PSEEN3362	-	hypothetical protein
3091	 65.72	0	3623007..3624485	+	492	104782407	-	PSEEN3363	-	hypothetical protein
3092	 45.92	-2	3624533..3625819	-	428	104782408	-	PSEEN3364	-	hypothetical protein
3093	 67.05	0	3626118..3628484	-	788	104782409	polB	PSEEN3365	-	DNA polymerase II
3094	 69.07	+1	3628634..3629839	-	401	104782410	-	PSEEN3366	-	major facilitator transporter
3095	 67.54	0	3629954..3630865	+	303	104782411	-	PSEEN3367	-	LysR family transcriptional regulator
3096	 65.04	0	3630846..3631766	-	306	104782412	-	PSEEN3368	-	LysR family transcriptional regulator
3097	 63.45	0	3631938..3632714	+	258	104782413	-	PSEEN3369	-	hypothetical protein
3098	 66.03	0	3632717..3633340	+	207	104782414	-	PSEEN3370	-	amino acid transporter LysE
3099	 66.21	0	3633369..3634454	+	361	104782415	-	PSEEN3371	-	hypothetical protein
3100	 69.78	+1	3634548..3635285	+	245	104782416	-	PSEEN3372	-	hypothetical protein
3101	 66.67	0	3635476..3636174	+	232	104782417	-	PSEEN3373	-	branched-chain amino acid transport protein, AzlC
3102	 65.40	0	3636171..3636485	+	104	104782418	-	PSEEN3374	-	hypothetical protein
3103	 70.13	+1	3636482..3637318	+	278	104782419	-	PSEEN3375	-	AraC family transcriptional regulator
3104	 66.23	0	3637378..3637605	+	75	104782420	-	PSEEN3376	-	hypothetical protein
3105	 64.79	0	3637761..3638240	-	159	104782421	-	PSEEN3377	-	hypothetical protein
3106	 63.71	0	3638241..3638849	-	202	104782422	-	PSEEN3378	-	hypothetical protein
3107	 62.91	0	3639134..3639718	-	194	104782423	-	PSEEN3379	-	hypothetical protein
3108	 64.15	0	3639776..3640810	-	344	104782424	-	PSEEN3380	-	acetyltransferase Act
3109	 65.97	0	3640975..3643275	-	766	104782425	cti	PSEEN3381	-	esterified fatty acid cis/trans isomerase
3110	 64.94	0	3643448..3647155	+	1235	104782426	metH	PSEEN3382	-	B12-dependent methionine synthase
3111	 59.71	0	3647511..3647783	+	90	104782427	-	PSEEN3383	-	acyl carrier protein
3112	 66.67	0	3647786..3649459	-	557	104782428	-	PSEEN3384	-	acyl-CoA synthetase
3113	 65.64	0	3649746..3650909	+	387	104782429	ivd	PSEEN3386	-	isovaleryl-CoA dehydrogenase
3114	 67.29	0	3650929..3652536	+	535	104782430	mccB	PSEEN3387	-	3-methylcrotonyl-CoA carboxylase, beta subunit
3115	 68.50	0	3652540..3653355	+	271	104782431	-	PSEEN3388	-	gamma-carboxygeranoyl-CoA hydratase
3116	 67.99	0	3653352..3655316	+	654	104782432	-	PSEEN3389	-	methylcrotonoyl-CoA carboxylase alpha chain
3117	 62.75	0	3655405..3656094	-	229	104782433	-	PSEEN3390	-	Cro/CI family transcriptional regulator
3118	 63.49	0	3656191..3656505	+	104	104782434	-	PSEEN3391	-	hypothetical protein
3119	 66.67	0	3656936..3657454	+	172	104782435	-	PSEEN3392	-	hypothetical protein
3120	 64.93	0	3657624..3658772	+	382	104782436	-	PSEEN3393	-	zinc-dependent carboxypeptidase
3121	 64.81	0	3658918..3659886	-	322	104782437	csuE	PSEEN3394	-	type 1 pili protein CsuE
3122	 68.08	0	3659883..3662225	-	780	104782438	csuD	PSEEN3395	-	type 1 pili usher protein CsuD
3123	 68.85	+1	3662285..3663061	-	258	104782439	csuC	PSEEN3396	-	type 1 pili usher pathway chaperone CsuC
3124	 67.07	0	3663099..3663596	-	165	104782440	-	PSEEN3397	-	type 1 pili subunit CsuA/B protein
3125	 68.16	0	3663600..3664133	-	177	104782441	-	PSEEN3398	-	type 1 pili subunit CsuA/B protein
3126	 67.77	0	3664152..3664697	-	181	104782442	-	PSEEN3399	-	type 1 pili subunit CsuA/B protein
3127	 69.01	+1	3664707..3665219	-	170	104782443	-	PSEEN3400	-	type 1 pili protein CsuB
3128	 67.43	0	3665505..3667745	+	746	104782444	-	PSEEN3401	-	bacteriophytochrome 1
3129	 66.23	0	3667760..3668221	+	153	104782445	-	PSEEN3402	-	response regulator
3130	 66.08	0	3668232..3670622	+	796	104782446	-	PSEEN3403	-	sensory box histidine kinase/response regulator (hybrid)
3131	 55.26	-1	3671154..3671267	-	37	104782447	-	PSEEN3404	-	hypothetical protein
3132	 65.83	0	3671353..3672429	-	358	104782448	-	PSEEN3405	-	periplasmic sugar-binding protein
3133	 64.79	0	3672646..3674298	+	550	104782449	cysI	PSEEN3407	-	ferredoxin-nitrite reductase
3134	 62.22	0	3674282..3674776	+	164	104782450	-	PSEEN3408	-	hypothetical protein
3135	 64.56	0	3674909..3676477	+	522	104782451	-	PSEEN3409	-	hypothetical protein
3136	 64.02	0	3676589..3677494	-	301	104782452	-	PSEEN3410	-	AraC family transcriptional regulator
3137	 66.42	0	3677833..3678636	+	267	104782453	dkgB	PSEEN3411	-	2,5-diketo-D-gluconate reductase B
3138	 69.29	+1	3678700..3679881	+	393	104782454	-	PSEEN3412	-	major facilitator transporter
3139	 64.95	0	3680153..3680617	+	154	104782455	-	PSEEN3413	-	hypothetical protein
3140	 63.44	0	3680842..3681120	+	92	104782456	-	PSEEN3414	-	hypothetical protein
3141	 60.06	0	3681128..3681838	+	236	104782457	-	PSEEN3415	-	hypothetical protein
3142	 47.55	-2	3681963..3684143	+	726	104782458	-	PSEEN3416	-	hypothetical protein
3143	 64.22	0	3684357..3685418	-	353	104782459	-	PSEEN3417	-	sigma-54 dependent transcriptional regulator
3144	 67.70	0	3685745..3686812	+	355	104782460	-	PSEEN3419	-	ABC transporter, periplasmic sulfonate-binding protein
3145	 68.71	+1	3686826..3688049	+	407	104782461	-	PSEEN3420	-	hypothetical protein
3146	 66.58	0	3688065..3689216	+	383	104782462	-	PSEEN3421	-	alkanesulfonate monooxygenase
3147	 66.42	0	3689299..3689700	-	133	104782463	-	PSEEN3422	-	hypothetical protein
3148	 64.89	0	3689780..3690511	-	243	104782464	-	PSEEN3423	-	hypothetical protein
3149	 70.58	+1	3690527..3691573	-	348	104782465	-	PSEEN3424	-	hypothetical protein
3150	 67.40	0	3691965..3693197	+	410	104782466	-	PSEEN3425	-	acyl-CoA dehydrogenase
3151	 69.77	+1	3693271..3695043	+	590	104782467	-	PSEEN3426	-	ABC transporter; ATP-binding and memebrane protein
3152	 68.82	+1	3695036..3696850	+	604	104782468	-	PSEEN3427	-	ABC transporter, ATP-binding and membrane protein
3153	 69.19	+1	3697004..3698152	+	382	104782469	-	PSEEN3428	-	FMNH2-dependent alkanesulfonate monooxygenase
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.