IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3024	 68.12	0	3550341..3550478	-	45	104782340	-	PSEEN3292	-	hypothetical protein
3025	 61.90	0	3550511..3550720	-	69	104782341	-	PSEEN3293	-	hypothetical protein
3026	 62.62	0	3550993..3553191	-	732	104782342	-	PSEEN3294	-	hypothetical protein
3027	 65.90	0	3553450..3553839	+	129	104782343	-	PSEEN3295	-	hypothetical protein
3028	 62.90	0	3553836..3554180	-	114	104782344	-	PSEEN3296	-	hypothetical protein
3029	 68.58	0	3554314..3554994	+	226	104782345	-	PSEEN3297	-	hypothetical protein
3030	 65.13	0	3554999..3555193	-	64	104782346	-	PSEEN3298	-	hypothetical protein
3031	 61.39	0	3555257..3557512	-	751	104782347	-	PSEEN3299	-	hypothetical protein
3032	 66.34	0	3557593..3560388	-	931	104782348	-	PSEEN3301	-	non-ribosomal peptide synthetase
3033	 66.92	0	3560691..3561086	+	131	104782349	-	PSEEN3302	-	hypothetical protein
3034	 65.89	0	3561159..3561674	+	171	104782350	-	PSEEN3303	-	hypothetical protein
3035	 59.08	-1	3561801..3563105	-	434	104782351	-	PSEEN3304	-	hypothetical protein
3036	 58.38	-1	3563102..3565129	-	675	104782352	-	PSEEN3305	-	hypothetical protein
3037	 67.53	0	3565370..3565717	+	115	104782353	arsR	PSEEN3306	-	arsenic resistance transcriptional regulator
3038	 67.45	0	3565737..3567020	+	427	104782354	arsB	PSEEN3307	-	arsenite efflux pump
3039	 63.69	0	3567033..3567503	+	156	104782355	arsC	PSEEN3308	-	arsenate reductase
3040	 65.47	0	3567616..3568698	+	360	104782356	-	PSEEN3309	-	hypothetical protein
3041	 61.70	0	3568736..3569359	-	207	104782357	-	PSEEN3310	-	hypothetical protein
3042	 65.93	0	3569442..3569984	+	180	104782358	-	PSEEN3311	-	hypothetical protein
3043	 66.67	0	3570209..3571129	+	306	104782359	-	PSEEN3312	-	glutaminase
3044	 66.19	0	3571223..3572278	-	351	104782360	-	PSEEN3313	-	AraC family transcriptional regulator
3045	 64.95	0	3572513..3573445	+	310	104782361	-	PSEEN3314	-	hypothetical protein
3046	 66.43	0	3573517..3574794	-	425	104782362	-	PSEEN3315	-	hypothetical protein
3047	 67.38	0	3574810..3576204	-	464	104782363	-	PSEEN3316	-	oxidase, FAD-linked
3048	 69.42	+1	3576220..3576582	-	120	104782364	-	PSEEN3317	-	cytochrome c
3049	 65.87	0	3576841..3577092	+	83	104782365	-	PSEEN3318	-	lipoprotein
3050	 66.86	0	3577096..3578112	-	338	104782366	-	PSEEN3319	-	ammonia monooxygenase
3051	 65.51	0	3578246..3579454	-	402	104782367	-	PSEEN3320	-	hypothetical protein
3052	 65.34	0	3579533..3580363	-	276	104782368	-	PSEEN3321	-	hypothetical protein
3053	 66.67	0	3580415..3581590	-	391	104782369	-	PSEEN3322	-	major facilitator transporter
3054	 67.89	0	3581683..3582582	+	299	104782370	-	PSEEN3323	-	LysR family transcriptional regulator
3055	 66.19	0	3582779..3583831	-	350	104782371	-	PSEEN3324	-	hypothetical protein
3056	 64.86	0	3583858..3584409	-	183	104782372	-	PSEEN3325	-	isochorismatase superfamily hydrolase
3057	 60.50	0	3584466..3585794	-	442	104782373	-	PSEEN3326	-	hypothetical protein
3058	 55.59	-1	3585821..3586750	-	309	104782374	-	PSEEN3327	-	hypothetical protein
3059	 66.52	0	3586828..3587517	-	229	104782375	-	PSEEN3328	-	thioesterase involved in non-ribosomal peptide biosynthesis
3060	 61.26	0	3587568..3587789	-	73	104782376	-	PSEEN3329	-	hypothetical protein
3061	 68.12	0	3587962..3588579	+	205	104782377	-	PSEEN3330	-	amino acid transporter LysE
3062	 68.66	+1	3588585..3588986	-	133	104782378	-	PSEEN3331	-	hypothetical protein
3063	 68.54	0	3589042..3595380	-	2112	104782379	-	PSEEN3332	-	non-ribosomal peptide synthetase
3064	 64.62	0	3595809..3596588	+	259	104782380	-	PSEEN3335	-	LuxR family transcriptional regulator
3065	 70.09	+1	3596605..3598035	+	476	104782381	oprM	PSEEN3336	-	Outer membrane protein oprM precursor
3066	 71.71	+1	3598005..3598757	-	250	104782382	-	PSEEN3337	-	transcriptional regulator
3067	 67.31	0	3598943..3599560	+	205	104782383	-	PSEEN3338	-	hypothetical protein
3068	 65.67	0	3599576..3600076	+	166	104782384	-	PSEEN3339	-	hypothetical protein
3069	 68.13	0	3600153..3600767	-	204	104782385	-	PSEEN3340	-	amino acid transporter LysE
3070	 64.46	0	3600881..3601333	+	150	104782386	-	PSEEN3341	-	AsnC family transcriptional regulator
3071	 65.32	0	3601722..3603134	+	470	104782387	-	PSEEN3342	-	NCS1 nucleoside transporter
3072	 67.24	0	3603238..3604467	-	409	104782388	-	PSEEN3343	-	acyl-CoA dehydrogenase
3073	 66.77	0	3604608..3605534	+	308	104782389	-	PSEEN3344	-	LysR family transcriptional regulator
3074	 63.11	0	3605678..3605986	+	102	104782390	-	PSEEN3345	-	hypothetical protein
3075	 68.26	0	3606118..3607245	+	375	104782391	-	PSEEN3346	-	hypothetical protein
3076	 65.83	0	3607247..3607726	+	159	104782392	-	PSEEN3347	-	hypothetical protein
3077	 67.41	0	3607835..3609052	+	405	104782393	iscS-2	PSEEN3349	-	cysteine desulfurase
3078	 60.61	0	3609177..3609374	-	65	104782394	-	PSEEN3350	-	hypothetical protein
3079	 65.28	0	3609396..3609539	-	47	104782395	-	PSEEN3351	-	hypothetical protein
3080	 68.25	0	3609642..3610526	-	294	104782396	-	PSEEN3352	-	LysR family transcriptional regulator
3081	 66.35	0	3610628..3611584	+	318	104782397	-	PSEEN3353	-	hypothetical protein
3082	 66.53	0	3611702..3612421	-	239	104782398	-	PSEEN3354	-	hypothetical protein
3083	 63.91	0	3612414..3613247	-	277	104782399	-	PSEEN3355	-	hypothetical protein
3084	 64.85	0	3613315..3613809	-	164	104782400	-	PSEEN3356	-	hypothetical protein
3085	 66.49	0	3614061..3614621	-	186	104782401	-	PSEEN3357	-	hypothetical protein
3086	 65.77	0	3614829..3619304	-	1491	104782402	-	PSEEN3358	-	hypothetical protein
3087	 65.25	0	3619574..3620911	+	445	104782403	-	PSEEN3359	-	UDP-glucose dehydrogenase
3088	 65.28	0	3620899..3621909	+	336	104782404	-	PSEEN3360	-	UDP-glucuronate 5'-epimerase
3089	 67.35	0	3621910..3622641	+	243	104782405	-	PSEEN3361	-	glycosyl transferase family protein
3090	 62.27	0	3622638..3622910	+	90	104782406	-	PSEEN3362	-	hypothetical protein
3091	 65.72	0	3623007..3624485	+	492	104782407	-	PSEEN3363	-	hypothetical protein
3092	 45.92	-2	3624533..3625819	-	428	104782408	-	PSEEN3364	-	hypothetical protein
3093	 67.05	0	3626118..3628484	-	788	104782409	polB	PSEEN3365	-	DNA polymerase II
3094	 69.07	+1	3628634..3629839	-	401	104782410	-	PSEEN3366	-	major facilitator transporter
3095	 67.54	0	3629954..3630865	+	303	104782411	-	PSEEN3367	-	LysR family transcriptional regulator
3096	 65.04	0	3630846..3631766	-	306	104782412	-	PSEEN3368	-	LysR family transcriptional regulator
3097	 63.45	0	3631938..3632714	+	258	104782413	-	PSEEN3369	-	hypothetical protein
3098	 66.03	0	3632717..3633340	+	207	104782414	-	PSEEN3370	-	amino acid transporter LysE
3099	 66.21	0	3633369..3634454	+	361	104782415	-	PSEEN3371	-	hypothetical protein
3100	 69.78	+1	3634548..3635285	+	245	104782416	-	PSEEN3372	-	hypothetical protein
3101	 66.67	0	3635476..3636174	+	232	104782417	-	PSEEN3373	-	branched-chain amino acid transport protein, AzlC
3102	 65.40	0	3636171..3636485	+	104	104782418	-	PSEEN3374	-	hypothetical protein
3103	 70.13	+1	3636482..3637318	+	278	104782419	-	PSEEN3375	-	AraC family transcriptional regulator
3104	 66.23	0	3637378..3637605	+	75	104782420	-	PSEEN3376	-	hypothetical protein
3105	 64.79	0	3637761..3638240	-	159	104782421	-	PSEEN3377	-	hypothetical protein
3106	 63.71	0	3638241..3638849	-	202	104782422	-	PSEEN3378	-	hypothetical protein
3107	 62.91	0	3639134..3639718	-	194	104782423	-	PSEEN3379	-	hypothetical protein
3108	 64.15	0	3639776..3640810	-	344	104782424	-	PSEEN3380	-	acetyltransferase Act
3109	 65.97	0	3640975..3643275	-	766	104782425	cti	PSEEN3381	-	esterified fatty acid cis/trans isomerase
3110	 64.94	0	3643448..3647155	+	1235	104782426	metH	PSEEN3382	-	B12-dependent methionine synthase
3111	 59.71	0	3647511..3647783	+	90	104782427	-	PSEEN3383	-	acyl carrier protein
3112	 66.67	0	3647786..3649459	-	557	104782428	-	PSEEN3384	-	acyl-CoA synthetase
3113	 65.64	0	3649746..3650909	+	387	104782429	ivd	PSEEN3386	-	isovaleryl-CoA dehydrogenase
3114	 67.29	0	3650929..3652536	+	535	104782430	mccB	PSEEN3387	-	3-methylcrotonyl-CoA carboxylase, beta subunit
3115	 68.50	0	3652540..3653355	+	271	104782431	-	PSEEN3388	-	gamma-carboxygeranoyl-CoA hydratase
3116	 67.99	0	3653352..3655316	+	654	104782432	-	PSEEN3389	-	methylcrotonoyl-CoA carboxylase alpha chain
3117	 62.75	0	3655405..3656094	-	229	104782433	-	PSEEN3390	-	Cro/CI family transcriptional regulator
3118	 63.49	0	3656191..3656505	+	104	104782434	-	PSEEN3391	-	hypothetical protein
3119	 66.67	0	3656936..3657454	+	172	104782435	-	PSEEN3392	-	hypothetical protein
3120	 64.93	0	3657624..3658772	+	382	104782436	-	PSEEN3393	-	zinc-dependent carboxypeptidase
3121	 64.81	0	3658918..3659886	-	322	104782437	csuE	PSEEN3394	-	type 1 pili protein CsuE
3122	 68.08	0	3659883..3662225	-	780	104782438	csuD	PSEEN3395	-	type 1 pili usher protein CsuD
3123	 68.85	+1	3662285..3663061	-	258	104782439	csuC	PSEEN3396	-	type 1 pili usher pathway chaperone CsuC
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.