IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2963	 68.03	0	3456563..3457516	-	317	104782279	-	PSEEN3228	-	lipase
2964	 68.75	+1	3457580..3469375	-	3931	104782280	-	PSEEN3229	-	peptide synthase
2965	 69.67	+1	3469375..3475893	-	2172	104782281	-	PSEEN3230	-	pyoverdine sidechain peptide synthetase
2966	 70.01	+1	3475890..3483704	-	2604	104782282	-	PSEEN3231	-	pyoverdine sidechain peptide synthetase
2967	 69.85	+1	3483701..3486745	-	1014	104782283	-	PSEEN3232	-	pyoverdine sidechain peptide synthetase
2968	 65.92	0	3486742..3487818	-	358	104782284	-	PSEEN3233	-	SyrP protein
2969	 69.91	+1	3487876..3497142	-	3088	104782285	-	PSEEN3234	-	pyoverdine sidechain peptide synthetase
2970	 66.33	0	3497367..3498557	+	396	104782286	-	PSEEN3235	-	hypothetical protein
2971	 67.41	0	3498554..3499093	+	179	104782287	-	PSEEN3236	-	hypothetical protein
2972	 68.24	0	3499090..3499407	+	105	104782288	-	PSEEN3237	-	hypothetical protein
2973	 71.40	+1	3499404..3499973	+	189	104782289	-	PSEEN3238	-	hypothetical protein
2974	 65.79	0	3499990..3500898	+	302	104782290	-	PSEEN3239	-	cation ABC transporter, periplasmic cation-binding protein
2975	 72.27	+1	3500895..3501644	+	249	104782291	-	PSEEN3240	-	cation ABC transporter, ATP-binding protein
2976	 67.67	0	3501641..3502540	+	299	104782292	-	PSEEN3241	-	cation ABC transporter, permease protein
2977	 69.54	+1	3502537..3503406	+	289	104782293	-	PSEEN3242	-	hypothetical protein
2978	 67.47	0	3503481..3504101	-	206	104782294	-	PSEEN3243	-	amino acid transporter LysE
2979	 67.94	0	3504327..3505268	-	313	104782295	-	PSEEN3244	-	LysR family transcriptional regulator
2980	 67.31	0	3505332..3506111	+	259	104782296	-	PSEEN3245	-	NAD(P)H quinone oxidoreductase
2981	 64.73	0	3506147..3506767	+	206	104782297	-	PSEEN3246	-	TetR family transcriptional regulator
2982	 66.78	0	3506777..3507679	-	300	104782298	-	PSEEN3247	-	LysR family transcriptional regulator
2983	 66.30	0	3507771..3509117	+	448	104782299	-	PSEEN3248	-	major facilitator transporter
2984	 61.23	0	3509107..3509511	+	134	104782300	-	PSEEN3249	-	hypothetical protein
2985	 59.86	0	3509630..3509908	-	92	104782301	-	PSEEN3250	-	hypothetical protein
2986	 66.27	0	3510063..3511337	-	424	104782302	-	PSEEN3251	-	dihydropyrimidine dehydrogenase
2987	 68.86	+1	3511338..3512705	-	455	104782303	-	PSEEN3252	-	putative oxidoreductase
2988	 68.19	0	3512914..3514353	-	479	104782304	dht	PSEEN3253	-	dihydropyrimidinase
2989	 66.20	0	3514958..3516451	+	497	104782305	-	PSEEN3254	-	NCS1 nucleoside transporter
2990	 68.92	+1	3516578..3517864	+	428	104782306	-	PSEEN3255	-	allantoate amidohydrolase
2991	 60.61	0	3517982..3518212	-	76	104782307	-	PSEEN3256	-	hypothetical protein
2992	 52.84	-2	3518848..3523200	+	1450	104782308	-	PSEEN3258	-	hypothetical protein
2993	 64.16	0	3523219..3523776	-	185	104782309	-	PSEEN3259	-	kinase
2994	 67.51	0	3523889..3524362	+	157	104782310	-	PSEEN3260	-	hypothetical protein
2995	 69.39	+1	3524370..3525689	-	439	104782311	-	PSEEN3261	-	major facilitator transporter
2996	 68.72	+1	3525744..3526814	-	356	104782312	-	PSEEN3262	-	hypothetical protein
2997	 67.76	0	3526914..3527831	-	305	104782313	-	PSEEN3263	-	LysR family transcriptional regulator
2998	 69.05	+1	3528190..3529911	+	573	104782314	-	PSEEN3265	-	metallo-dependent hydrolase
2999	 58.77	-1	3529950..3530354	-	134	104782315	-	PSEEN3266	-	hypothetical protein
3000	 61.58	0	3530305..3531090	-	261	104782316	-	PSEEN3267	-	hypothetical protein
3001	 61.56	0	3531164..3531907	-	247	104782317	-	PSEEN3268	-	hypothetical protein
3002	 65.00	0	3532073..3532852	-	259	104782318	-	PSEEN3269	-	hypothetical protein
3003	 65.86	0	3533261..3534124	+	287	104782319	-	PSEEN3270	-	sensory box protein
3004	 71.16	+1	3534135..3534779	-	214	104782320	-	PSEEN3271	-	hypothetical protein
3005	 65.65	0	3534763..3535350	-	195	104782321	-	PSEEN3272	-	RNA polymerase sigma factor
3006	 68.07	0	3535723..3536007	+	94	104782322	-	PSEEN3274	-	hypothetical protein
3007	 65.71	0	3536024..3536857	+	277	104782323	-	PSEEN3275	-	hypothetical protein
3008	 68.39	0	3536854..3537609	+	251	104782324	-	PSEEN3276	-	hypothetical protein
3009	 66.24	0	3537620..3538087	+	155	104782325	-	PSEEN3277	-	hypothetical protein
3010	 60.68	0	3538109..3538459	-	116	104782326	-	PSEEN3278	-	hypothetical protein
3011	 63.08	0	3538468..3538746	-	92	104782327	-	PSEEN3279	-	hypothetical protein
3012	 64.74	0	3539011..3539787	+	258	104782328	atoJ-2	PSEEN3280	-	arginine/ornithine ABC transporter periplasmic-binding protein
3013	 65.80	0	3539812..3540501	+	229	104782329	atoQ-2	PSEEN3281	-	arginine/ornithine ABC transporter permease
3014	 66.09	0	3540515..3541213	+	232	104782330	aotM-2	PSEEN3282	-	arginine/ornithine ABC transporter, permease protein
3015	 69.27	+1	3541224..3542336	+	370	104782331	-	PSEEN3283	-	hypothetical protein
3016	 66.41	0	3542356..3543120	+	254	104782332	aotP-2	PSEEN3284	-	arginine/ornithine transport protein AotP
3017	 67.22	0	3543199..3544104	+	301	104782333	-	PSEEN3285	-	RipR family transcriptional regulator
3018	 62.24	0	3544419..3544802	+	127	104782334	-	PSEEN3286	-	tautomerase
3019	 68.12	0	3544894..3545787	+	297	104782335	-	PSEEN3287	-	LysR family transcriptional regulator
3020	 66.95	0	3545880..3546584	+	234	104782336	-	PSEEN3288	-	short chain dehydrogenase/reductase family oxidoreductase
3021	 66.48	0	3546596..3548224	-	542	104782337	-	PSEEN3289	-	ion mechanosensitive channel
3022	 65.73	0	3548583..3549755	+	390	104782338	-	PSEEN3290	-	MerR family transcriptional regulator
3023	 66.47	0	3549778..3550284	+	168	104782339	-	PSEEN3291	-	acetyltransferase
3024	 68.12	0	3550341..3550478	-	45	104782340	-	PSEEN3292	-	hypothetical protein
3025	 61.90	0	3550511..3550720	-	69	104782341	-	PSEEN3293	-	hypothetical protein
3026	 62.62	0	3550993..3553191	-	732	104782342	-	PSEEN3294	-	hypothetical protein
3027	 65.90	0	3553450..3553839	+	129	104782343	-	PSEEN3295	-	hypothetical protein
3028	 62.90	0	3553836..3554180	-	114	104782344	-	PSEEN3296	-	hypothetical protein
3029	 68.58	0	3554314..3554994	+	226	104782345	-	PSEEN3297	-	hypothetical protein
3030	 65.13	0	3554999..3555193	-	64	104782346	-	PSEEN3298	-	hypothetical protein
3031	 61.39	0	3555257..3557512	-	751	104782347	-	PSEEN3299	-	hypothetical protein
3032	 66.34	0	3557593..3560388	-	931	104782348	-	PSEEN3301	-	non-ribosomal peptide synthetase
3033	 66.92	0	3560691..3561086	+	131	104782349	-	PSEEN3302	-	hypothetical protein
3034	 65.89	0	3561159..3561674	+	171	104782350	-	PSEEN3303	-	hypothetical protein
3035	 59.08	-1	3561801..3563105	-	434	104782351	-	PSEEN3304	-	hypothetical protein
3036	 58.38	-1	3563102..3565129	-	675	104782352	-	PSEEN3305	-	hypothetical protein
3037	 67.53	0	3565370..3565717	+	115	104782353	arsR	PSEEN3306	-	arsenic resistance transcriptional regulator
3038	 67.45	0	3565737..3567020	+	427	104782354	arsB	PSEEN3307	-	arsenite efflux pump
3039	 63.69	0	3567033..3567503	+	156	104782355	arsC	PSEEN3308	-	arsenate reductase
3040	 65.47	0	3567616..3568698	+	360	104782356	-	PSEEN3309	-	hypothetical protein
3041	 61.70	0	3568736..3569359	-	207	104782357	-	PSEEN3310	-	hypothetical protein
3042	 65.93	0	3569442..3569984	+	180	104782358	-	PSEEN3311	-	hypothetical protein
3043	 66.67	0	3570209..3571129	+	306	104782359	-	PSEEN3312	-	glutaminase
3044	 66.19	0	3571223..3572278	-	351	104782360	-	PSEEN3313	-	AraC family transcriptional regulator
3045	 64.95	0	3572513..3573445	+	310	104782361	-	PSEEN3314	-	hypothetical protein
3046	 66.43	0	3573517..3574794	-	425	104782362	-	PSEEN3315	-	hypothetical protein
3047	 67.38	0	3574810..3576204	-	464	104782363	-	PSEEN3316	-	oxidase, FAD-linked
3048	 69.42	+1	3576220..3576582	-	120	104782364	-	PSEEN3317	-	cytochrome c
3049	 65.87	0	3576841..3577092	+	83	104782365	-	PSEEN3318	-	lipoprotein
3050	 66.86	0	3577096..3578112	-	338	104782366	-	PSEEN3319	-	ammonia monooxygenase
3051	 65.51	0	3578246..3579454	-	402	104782367	-	PSEEN3320	-	hypothetical protein
3052	 65.34	0	3579533..3580363	-	276	104782368	-	PSEEN3321	-	hypothetical protein
3053	 66.67	0	3580415..3581590	-	391	104782369	-	PSEEN3322	-	major facilitator transporter
3054	 67.89	0	3581683..3582582	+	299	104782370	-	PSEEN3323	-	LysR family transcriptional regulator
3055	 66.19	0	3582779..3583831	-	350	104782371	-	PSEEN3324	-	hypothetical protein
3056	 64.86	0	3583858..3584409	-	183	104782372	-	PSEEN3325	-	isochorismatase superfamily hydrolase
3057	 60.50	0	3584466..3585794	-	442	104782373	-	PSEEN3326	-	hypothetical protein
3058	 55.59	-1	3585821..3586750	-	309	104782374	-	PSEEN3327	-	hypothetical protein
3059	 66.52	0	3586828..3587517	-	229	104782375	-	PSEEN3328	-	thioesterase involved in non-ribosomal peptide biosynthesis
3060	 61.26	0	3587568..3587789	-	73	104782376	-	PSEEN3329	-	hypothetical protein
3061	 68.12	0	3587962..3588579	+	205	104782377	-	PSEEN3330	-	amino acid transporter LysE
3062	 68.66	+1	3588585..3588986	-	133	104782378	-	PSEEN3331	-	hypothetical protein
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.