IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2729	 67.80	0	3144804..3146297	+	497	104782045	-	PSEEN2978	-	NAD-dependent aldehyde dehydrogenase
2730	 63.31	0	3146512..3147315	-	267	104782046	-	PSEEN2979	-	hypothetical protein
2731	 65.59	0	3147540..3147818	+	92	104782047	-	PSEEN2980	-	hypothetical protein
2732	 62.63	0	3147815..3148507	-	230	104782048	-	PSEEN2981	-	hypothetical protein
2733	 63.43	0	3148724..3149125	+	133	104782049	-	PSEEN2982	-	MerR family transcriptional regulator
2734	 66.89	0	3149146..3150045	+	299	104782050	mvaB	PSEEN2983	-	hydroxymethylglutaryl-CoA lyase
2735	 65.53	0	3150581..3151108	-	175	104782051	-	PSEEN2986	-	Mg2+ transporter
2736	 64.26	0	3151476..3152885	+	469	104782052	-	PSEEN2987	-	iron-sulfur cluster-binding protein
2737	 66.88	0	3152936..3154345	+	469	104782053	-	PSEEN2988	-	GntR family transcriptional regulator
2738	 64.86	0	3154400..3156442	+	680	104782054	-	PSEEN2989	-	sensory box histidine kinase/response regulator (hybrid)
2739	 66.92	0	3156449..3157228	-	259	104782055	-	PSEEN2990	-	short chain dehydrogenase/reductase family oxidoreductase
2740	 64.71	0	3157357..3158892	-	511	104782056	-	PSEEN2992	-	EmrB/QacA family drug resistance transporter
2741	 67.67	0	3158889..3160082	-	397	104782057	-	PSEEN2993	-	HlyD family secretion protein
2742	 66.46	0	3160113..3160586	-	157	104782058	-	PSEEN2994	-	MarR family transcriptional regulator
2743	 66.07	0	3160974..3161981	+	335	104782059	-	PSEEN2995	-	FecR family transmembrane sensor protein
2744	 60.91	0	3161991..3163310	-	439	104782060	-	PSEEN2996	-	NahC family Na(+)/H(+) antiporter
2745	 67.60	0	3163562..3165709	+	715	104782061	-	PSEEN2997	-	methyl-accepting chemotaxis transducer
2746	 65.03	0	3165793..3166707	-	304	104782062	-	PSEEN2998	-	phage integrase family site specific recombinase
2747	 44.23	-2	3166767..3166922	-	51	104782063	-	PSEEN2999	-	hypothetical protein
2748	 67.43	0	3166921..3168102	+	393	104782064	-	PSEEN3000	-	NnrS protein
2749	 65.90	0	3168297..3168944	+	215	104782065	-	PSEEN3002	-	hypothetical protein
2750	 68.13	0	3168870..3170099	-	409	104782066	aspC	PSEEN3003	-	aspartate aminotransferase
2751	 64.71	0	3170392..3170646	+	84	104782067	-	PSEEN3004	-	hypothetical protein
2752	 63.05	0	3170754..3171140	+	128	104782068	-	PSEEN3005	-	hypothetical protein
2753	 63.51	0	3171217..3171786	+	189	104782069	-	PSEEN3006	-	hypothetical protein
2754	 63.15	0	3171903..3173582	-	559	104782070	-	PSEEN3007	-	major facilitator transporter
2755	 66.01	0	3173756..3174520	-	254	104782071	-	PSEEN3008	-	alpha/beta fold family hydrolase
2756	 64.85	0	3174703..3179718	+	1671	104782072	-	PSEEN3009	-	hypothetical protein
2757	 64.35	0	3179720..3182224	-	834	104782073	-	PSEEN3010	-	UvrD/Rep family helicase
2758	 65.95	0	3182411..3183109	+	232	104782074	-	PSEEN3011	-	hypothetical protein
2759	 64.14	0	3183228..3184178	-	316	104782075	benR	PSEEN3012	-	benABC operon transcriptional activator BenR
2760	 67.30	0	3184457..3185248	-	263	104782076	-	PSEEN3013	-	inositol monophosphatase
2761	 61.60	0	3185478..3186128	+	216	104782077	-	PSEEN3014	-	LuxR family transcriptional regulator
2762	 67.85	0	3186340..3187017	+	225	104782078	-	PSEEN3015	-	HAD superfamily hydrolase
2763	 65.70	0	3187228..3187950	+	240	104782079	-	PSEEN3016	-	hypothetical protein
2764	 66.67	0	3187952..3188941	-	329	104782080	-	PSEEN3017	-	hypothetical protein
2765	 67.54	0	3189109..3190248	+	379	104782081	ampC	PSEEN3018	-	beta-lactamase
2766	 67.95	0	3190252..3190875	+	207	104782082	-	PSEEN3019	-	glutathione S-transferase
2767	 64.26	0	3191186..3191518	+	110	104782083	-	PSEEN3020	-	hypothetical protein
2768	 67.38	0	3191724..3192146	+	140	104782084	-	PSEEN3021	-	hypothetical protein
2769	 66.34	0	3192137..3192442	-	101	104782085	-	PSEEN3022	-	hypothetical protein
2770	 59.26	-1	3192588..3192776	-	62	104782086	-	PSEEN3023	-	hypothetical protein
2771	 64.49	0	3192918..3193238	-	106	104782087	-	PSEEN3024	-	hypothetical protein
2772	 65.65	0	3193366..3194253	-	295	104782088	-	PSEEN3025	-	hypothetical protein
2773	 65.16	0	3194515..3195912	+	465	104782089	-	PSEEN3026	-	purine-cytosine related permease
2774	 67.04	0	3196043..3199216	-	1057	104782090	-	PSEEN3027	-	serine protease PspB
2775	 68.53	0	3199204..3202203	-	999	104782091	-	PSEEN3028	-	subtilisin-like serine protease
2776	 63.46	0	3202526..3203896	+	456	104782092	-	PSEEN3029	-	chromate transporter
2777	 70.49	+1	3203973..3205280	+	435	104782093	-	PSEEN3030	-	periplamic phosphate-binding protein
2778	 68.61	0	3205286..3206620	-	444	104782094	-	PSEEN3031	-	sensor histidine kinase
2779	 68.03	0	3206617..3207276	-	219	104782095	-	PSEEN3032	-	OmpR family DNA-binding response regulator
2780	 66.96	0	3207486..3207824	+	112	104782096	-	PSEEN3033	-	hypothetical protein
2781	 64.54	0	3207821..3208477	+	218	104782097	-	PSEEN3034	-	hypothetical protein
2782	 63.17	0	3208639..3209640	+	333	104782098	-	PSEEN3035	-	hypothetical protein
2783	 68.71	+1	3209728..3210021	-	97	104782099	-	PSEEN3036	-	hypothetical protein
2784	 67.74	0	3210100..3211212	+	370	104782100	ribB/A-2	PSEEN3037	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
2785	 65.69	0	3211816..3212841	+	341	104782101	-	PSEEN3038	-	polyamine ABC transporter, periplasmic polyamine-binding protein
2786	 66.23	0	3212838..3213755	+	305	104782102	-	PSEEN3039	-	polyamine ABC transporter, permease protein
2787	 66.42	0	3213762..3214571	+	269	104782103	-	PSEEN3040	-	polyamine ABC transporter, permease protein
2788	 66.13	0	3214591..3215703	+	370	104782104	-	PSEEN3041	-	polyamine ABC transporter, ATP binding protein
2789	 65.87	0	3215810..3217813	-	667	104782105	macB	PSEEN3042	-	macrolide ABC efflux protein MacB
2790	 65.02	0	3217816..3218970	-	384	104782106	macA	PSEEN3043	-	macrolide efflux protein MacA
2791	 69.20	+1	3219057..3233567	-	4836	104782107	-	PSEEN3044	-	non-ribosomal peptide synthetase, terminal component
2792	 68.12	0	3233564..3259045	-	8493	104782108	-	PSEEN3045	-	non ribosomal peptide synthetase
2793	 65.31	0	3259324..3260205	-	293	104782109	-	PSEEN3046	-	LysR family transcriptional regulator
2794	 59.75	0	3260362..3261618	+	418	104782110	-	PSEEN3047	-	hypothetical protein
2795	 64.81	0	3261697..3262884	-	395	104782111	pobA	PSEEN3048	-	4-hydroxybenzoate 3-monooxygenase
2796	 65.18	0	3263042..3263917	+	291	104782112	pobR	PSEEN3049	-	transcriptional regulator PobR
2797	 64.58	0	3264003..3265058	+	351	104782113	-	PSEEN3050	-	hypothetical protein
2798	 63.33	0	3265081..3267060	-	659	104782114	-	PSEEN3051	-	sensory box histidine kinase/response regulator (hybrid)
2799	 60.33	0	3267128..3267553	-	141	104782115	ccd	PSEEN3052	-	cytosine deaminase
2800	 61.16	0	3267721..3268410	+	229	104782116	-	PSEEN3053	-	hypothetical protein
2801	 62.76	0	3268500..3269573	-	357	104782117	hpd	PSEEN3054	-	4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase)
2802	 54.07	-2	3269608..3269853	-	81	104782118	-	PSEEN3055	-	hypothetical protein
2803	 67.38	0	3269930..3271474	+	514	104782119	-	PSEEN3057	-	phosphodiesterase
2804	 65.54	0	3271508..3272395	+	295	104782120	rarD-2	PSEEN3058	-	chloramphenicol-sensitive protein rarD
2805	 66.48	0	3272358..3273929	-	523	104782121	-	PSEEN3059	-	hypothetical protein
2806	 65.72	0	3274319..3276322	+	667	104782122	-	PSEEN3060	-	U32 family peptidase
2807	 65.59	0	3276546..3277103	+	185	104782123	nfxB	PSEEN3061	-	transcriptional regulator NfxB
2808	 68.71	+1	3277107..3277985	-	292	104782124	-	PSEEN3062	-	LysR family transcriptional regulator
2809	 68.30	0	3278093..3279073	+	326	104782125	-	PSEEN3063	-	polysaccharide deacetylase
2810	 67.03	0	3279080..3279634	-	184	104782126	-	PSEEN3064	-	hypothetical protein
2811	 66.92	0	3279767..3280162	+	131	104782127	-	PSEEN3065	-	transcriptional regulator
2812	 71.04	+1	3280500..3281276	+	258	104782128	-	PSEEN3066	-	Fe uptake ABC transporter, ATP-binding protein
2813	 67.60	0	3281273..3282235	+	320	104782129	-	PSEEN3067	-	Fe uptake ABC transporter, periplasmic binding protein
2814	 72.34	+1	3282235..3283257	+	340	104782130	-	PSEEN3068	-	Fe uptake ABC transporter, permease protein
2815	 68.50	0	3283229..3284866	-	545	104782131	-	PSEEN3069	-	sensor histidine kinase
2816	 66.99	0	3284973..3285587	+	204	104782132	-	PSEEN3070	-	LuxR family DNA-binding response regulator
2817	 67.78	0	3285668..3285847	-	59	104782133	-	PSEEN3071	-	hypothetical protein
2818	 63.18	0	3286065..3290573	+	1502	104782134	-	PSEEN3072	-	hypothetical protein
2819	 43.30	-2	3290570..3290860	+	96	104782135	-	PSEEN3073	-	hypothetical protein
2820	 60.37	0	3291163..3291432	-	89	104782136	-	PSEEN3074	-	hypothetical protein
2821	 61.73	0	3291558..3291800	-	80	104782137	-	PSEEN3075	-	hypothetical protein
2822	 63.45	0	3292208..3292456	-	82	104782138	-	PSEEN3076	-	hypothetical protein
2823	 64.49	0	3292543..3293094	-	183	104782139	-	PSEEN3077	-	Clp protease (protease subunit)
2824	 63.13	0	3293109..3293504	-	131	104782140	-	PSEEN3078	-	hypothetical protein
2825	 67.84	0	3293704..3294471	+	255	104782141	-	PSEEN3079	-	DNase
2826	 66.83	0	3294468..3295670	+	400	104782142	-	PSEEN3080	-	cardiolipin synthase 2
2827	 66.46	0	3295670..3296629	+	319	104782143	-	PSEEN3081	-	hypothetical protein
2828	 63.10	0	3296647..3297039	+	130	104782144	-	PSEEN3082	-	hypothetical protein
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.