IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2674	 66.67	0	3071438..3072190	-	250	104781990	-	PSEEN2920	-	hypothetical protein
2675	 64.88	0	3072296..3072967	+	223	104781991	-	PSEEN2921	-	hypothetical protein
2676	 65.02	0	3073026..3073934	-	302	104781992	-	PSEEN2922	-	hypothetical protein
2677	 63.80	0	3077304..3078140	+	278	104781993	-	PSEEN2925	-	hypothetical protein
2678	 65.00	0	3078265..3078864	+	199	104781994	-	PSEEN2926	-	hypothetical protein
2679	 66.84	0	3079052..3080221	+	389	104781995	-	PSEEN2927	-	hypothetical protein
2680	 66.19	0	3080180..3081229	-	349	104781996	-	PSEEN2928	-	hypothetical protein
2681	 65.85	0	3081363..3081974	-	203	104781997	-	PSEEN2929	-	azoreductase
2682	 67.22	0	3082108..3083010	+	300	104781998	-	PSEEN2930	-	LysR family transcriptional regulator
2683	 65.51	0	3083018..3083362	+	114	104781999	-	PSEEN2931	-	hypothetical protein
2684	 64.68	0	3083465..3083866	-	133	104782000	-	PSEEN2932	-	hypothetical protein
2685	 61.73	0	3083866..3084696	-	276	104782001	uppP	PSEEN2933	-	undecaprenyl pyrophosphate phosphatase
2686	 66.97	0	3084995..3086629	+	544	104782002	-	PSEEN2935	-	methyl-accepting chemotaxis transducer
2687	 57.10	-1	3086780..3088033	-	417	104782003	-	PSEEN2936	-	hypothetical protein
2688	 64.55	0	3088248..3088814	+	188	104782004	-	PSEEN2937	-	nicotinamide mononucleotide transporter PnuC
2689	 64.13	0	3088811..3089362	+	183	104782005	-	PSEEN2938	-	hypothetical protein
2690	 64.17	0	3089657..3090097	+	146	104782006	-	PSEEN2939	-	hypothetical protein
2691	 63.70	0	3090099..3090671	+	190	104782007	-	PSEEN2940	-	hypothetical protein
2692	 59.80	0	3090724..3092208	+	494	104782008	-	PSEEN2941	-	hypothetical protein
2693	 60.65	0	3092275..3092955	+	226	104782009	-	PSEEN2942	-	hypothetical protein
2694	 62.52	0	3092988..3093734	+	248	104782010	-	PSEEN2943	-	hypothetical protein
2695	 61.68	0	3093782..3095065	+	427	104782011	-	PSEEN2944	-	hypothetical protein
2696	 64.82	0	3095178..3097400	+	740	104782012	-	PSEEN2945	-	sulfatase
2697	 59.84	0	3097591..3098322	-	243	104782013	-	PSEEN2946	-	exopolysaccharide biosynthesis related tyrosine-protein kinase
2698	 61.38	0	3098409..3099977	-	522	104782014	-	PSEEN2947	-	exopolysaccharide transport protein
2699	 62.28	0	3099999..3100955	-	318	104782015	-	PSEEN2948	-	hypothetical protein
2700	 59.20	-1	3101142..3101663	-	173	104782016	-	PSEEN2949	-	polysaccharide export protein
2701	 51.74	-2	3102014..3102214	-	66	104782017	-	PSEEN2950	-	hypothetical protein
2702	 62.38	0	3102624..3103742	-	372	104782018	-	PSEEN2951	-	hypothetical protein
2703	 60.26	0	3103788..3104942	-	384	104782019	-	PSEEN2952	-	hypothetical protein
2704	 63.97	0	3105310..3109095	+	1261	104782020	-	PSEEN2953	-	hypothetical protein
2705	 66.31	0	3109099..3111333	-	744	104782021	-	PSEEN2954	-	diguanylate cyclase/phosphodiesterase
2706	 64.22	0	3111481..3114753	+	1090	104782022	-	PSEEN2955	-	hypothetical protein
2707	 64.14	0	3114869..3116488	+	539	104782023	-	PSEEN2956	-	NAD-dependent aldehyde dehydrogenase
2708	 63.25	0	3116660..3117127	+	155	104782024	-	PSEEN2957	-	hypothetical protein
2709	 64.07	0	3117214..3118407	+	397	104782025	-	PSEEN2958	-	hypothetical protein
2710	 65.19	0	3118505..3119653	-	382	104782026	adhB	PSEEN2959	-	alcohol dehydrogenase II (
2711	 67.11	0	3119799..3121361	-	520	104782027	ilvA-1	PSEEN2960	-	threonine dehydratase
2712	 63.01	0	3121549..3121986	-	145	104782028	-	PSEEN2961	-	hypothetical protein
2713	 60.45	0	3122085..3122261	-	58	104782029	-	PSEEN2962	-	hypothetical protein
2714	 66.41	0	3122304..3123458	+	384	104782030	wecB	PSEEN2963	-	UDP-N-acetyl glucosamine-2-epimerase
2715	 64.92	0	3123455..3125629	+	724	104782031	nfrB	PSEEN2964	-	bacteriophage N4 adsorption protein B
2716	 68.70	+1	3125626..3128628	+	1000	104782032	-	PSEEN2965	-	hypothetical protein
2717	 66.19	0	3128628..3129467	+	279	104782033	-	PSEEN2966	-	hypothetical protein
2718	 62.44	0	3129651..3130739	+	362	104782034	-	PSEEN2967	-	diguanylate cyclase
2719	 64.82	0	3130786..3132084	-	432	104782035	-	PSEEN2968	-	sensor histidine kinase
2720	 66.52	0	3132091..3132792	-	233	104782036	-	PSEEN2969	-	response regulator
2721	 69.39	+1	3132952..3134127	+	391	104782037	-	PSEEN2970	-	multidrug efflux RND membrane fusion protein
2722	 66.60	0	3134139..3137261	+	1040	104782038	-	PSEEN2971	-	multidrug/solvent RND transporter, AcrB-like
2723	 64.76	0	3137323..3137898	+	191	104782039	mobA	PSEEN2972	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2724	 65.35	0	3138018..3139688	-	556	104782040	-	PSEEN2973	-	acyl-CoA synthetase
2725	 63.19	0	3139860..3140981	-	373	104782041	-	PSEEN2974	-	quinohemoprotein amine dehydrogenase 40 kDa subunit
2726	 64.81	0	3141001..3141324	-	107	104782042	qhnDH	PSEEN2975	-	quinohemoprotein amine dehydrogenase gamma subunit
2727	 64.22	0	3141326..3142756	-	476	104782043	-	PSEEN2976	-	hypothetical protein
2728	 68.01	0	3142793..3144358	-	521	104782044	-	PSEEN2977	-	quinohemoprotein amine dehydrogenase 60 kDa subunit
2729	 67.80	0	3144804..3146297	+	497	104782045	-	PSEEN2978	-	NAD-dependent aldehyde dehydrogenase
2730	 63.31	0	3146512..3147315	-	267	104782046	-	PSEEN2979	-	hypothetical protein
2731	 65.59	0	3147540..3147818	+	92	104782047	-	PSEEN2980	-	hypothetical protein
2732	 62.63	0	3147815..3148507	-	230	104782048	-	PSEEN2981	-	hypothetical protein
2733	 63.43	0	3148724..3149125	+	133	104782049	-	PSEEN2982	-	MerR family transcriptional regulator
2734	 66.89	0	3149146..3150045	+	299	104782050	mvaB	PSEEN2983	-	hydroxymethylglutaryl-CoA lyase
2735	 65.53	0	3150581..3151108	-	175	104782051	-	PSEEN2986	-	Mg2+ transporter
2736	 64.26	0	3151476..3152885	+	469	104782052	-	PSEEN2987	-	iron-sulfur cluster-binding protein
2737	 66.88	0	3152936..3154345	+	469	104782053	-	PSEEN2988	-	GntR family transcriptional regulator
2738	 64.86	0	3154400..3156442	+	680	104782054	-	PSEEN2989	-	sensory box histidine kinase/response regulator (hybrid)
2739	 66.92	0	3156449..3157228	-	259	104782055	-	PSEEN2990	-	short chain dehydrogenase/reductase family oxidoreductase
2740	 64.71	0	3157357..3158892	-	511	104782056	-	PSEEN2992	-	EmrB/QacA family drug resistance transporter
2741	 67.67	0	3158889..3160082	-	397	104782057	-	PSEEN2993	-	HlyD family secretion protein
2742	 66.46	0	3160113..3160586	-	157	104782058	-	PSEEN2994	-	MarR family transcriptional regulator
2743	 66.07	0	3160974..3161981	+	335	104782059	-	PSEEN2995	-	FecR family transmembrane sensor protein
2744	 60.91	0	3161991..3163310	-	439	104782060	-	PSEEN2996	-	NahC family Na(+)/H(+) antiporter
2745	 67.60	0	3163562..3165709	+	715	104782061	-	PSEEN2997	-	methyl-accepting chemotaxis transducer
2746	 65.03	0	3165793..3166707	-	304	104782062	-	PSEEN2998	-	phage integrase family site specific recombinase
2747	 44.23	-2	3166767..3166922	-	51	104782063	-	PSEEN2999	-	hypothetical protein
2748	 67.43	0	3166921..3168102	+	393	104782064	-	PSEEN3000	-	NnrS protein
2749	 65.90	0	3168297..3168944	+	215	104782065	-	PSEEN3002	-	hypothetical protein
2750	 68.13	0	3168870..3170099	-	409	104782066	aspC	PSEEN3003	-	aspartate aminotransferase
2751	 64.71	0	3170392..3170646	+	84	104782067	-	PSEEN3004	-	hypothetical protein
2752	 63.05	0	3170754..3171140	+	128	104782068	-	PSEEN3005	-	hypothetical protein
2753	 63.51	0	3171217..3171786	+	189	104782069	-	PSEEN3006	-	hypothetical protein
2754	 63.15	0	3171903..3173582	-	559	104782070	-	PSEEN3007	-	major facilitator transporter
2755	 66.01	0	3173756..3174520	-	254	104782071	-	PSEEN3008	-	alpha/beta fold family hydrolase
2756	 64.85	0	3174703..3179718	+	1671	104782072	-	PSEEN3009	-	hypothetical protein
2757	 64.35	0	3179720..3182224	-	834	104782073	-	PSEEN3010	-	UvrD/Rep family helicase
2758	 65.95	0	3182411..3183109	+	232	104782074	-	PSEEN3011	-	hypothetical protein
2759	 64.14	0	3183228..3184178	-	316	104782075	benR	PSEEN3012	-	benABC operon transcriptional activator BenR
2760	 67.30	0	3184457..3185248	-	263	104782076	-	PSEEN3013	-	inositol monophosphatase
2761	 61.60	0	3185478..3186128	+	216	104782077	-	PSEEN3014	-	LuxR family transcriptional regulator
2762	 67.85	0	3186340..3187017	+	225	104782078	-	PSEEN3015	-	HAD superfamily hydrolase
2763	 65.70	0	3187228..3187950	+	240	104782079	-	PSEEN3016	-	hypothetical protein
2764	 66.67	0	3187952..3188941	-	329	104782080	-	PSEEN3017	-	hypothetical protein
2765	 67.54	0	3189109..3190248	+	379	104782081	ampC	PSEEN3018	-	beta-lactamase
2766	 67.95	0	3190252..3190875	+	207	104782082	-	PSEEN3019	-	glutathione S-transferase
2767	 64.26	0	3191186..3191518	+	110	104782083	-	PSEEN3020	-	hypothetical protein
2768	 67.38	0	3191724..3192146	+	140	104782084	-	PSEEN3021	-	hypothetical protein
2769	 66.34	0	3192137..3192442	-	101	104782085	-	PSEEN3022	-	hypothetical protein
2770	 59.26	-1	3192588..3192776	-	62	104782086	-	PSEEN3023	-	hypothetical protein
2771	 64.49	0	3192918..3193238	-	106	104782087	-	PSEEN3024	-	hypothetical protein
2772	 65.65	0	3193366..3194253	-	295	104782088	-	PSEEN3025	-	hypothetical protein
2773	 65.16	0	3194515..3195912	+	465	104782089	-	PSEEN3026	-	purine-cytosine related permease
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.