IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2641	 68.48	0	3036572..3038062	-	496	104781957	-	PSEEN2886	-	aldehyde dehydrogenase
2642	 66.90	0	3038131..3038979	-	282	104781958	-	PSEEN2887	-	LuxR family transcriptional regulator
2643	 65.83	0	3039412..3040482	+	356	104781959	-	PSEEN2888	-	enoyl-CoA hydratase
2644	 65.80	0	3040499..3041650	+	383	104781960	acdA	PSEEN2889	-	acyl-CoA dehydrogenase
2645	 65.32	0	3041835..3042725	+	296	104781961	-	PSEEN2890	-	universal stress protein
2646	 63.22	0	3042814..3043335	-	173	104781962	-	PSEEN2891	-	hypothetical protein
2647	 63.24	0	3043545..3044273	-	242	104781963	-	PSEEN2892	-	hypothetical protein
2648	 64.86	0	3044373..3044816	-	147	104781964	-	PSEEN2893	-	hypothetical protein
2649	 65.53	0	3044926..3045804	-	292	104781965	-	PSEEN2894	-	LysR family transcriptional regulator
2650	 67.03	0	3045904..3047289	+	461	104781966	-	PSEEN2895	-	aldehyde dehydrogenase
2651	 65.68	0	3047462..3048271	+	269	104781967	panB-2	PSEEN2896	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2652	 67.10	0	3048259..3049653	-	464	104781968	-	PSEEN2897	-	transcription regulator MocR
2653	 64.95	0	3049712..3050641	-	309	104781969	-	PSEEN2898	-	AraC family transcriptional regulator
2654	 65.49	0	3050762..3052120	+	452	104781970	-	PSEEN2899	-	glutamine synthetase
2655	 62.99	0	3052286..3053374	+	362	104781971	-	PSEEN2900	-	putrescine ABC transporter, periplasmic putrescine-binding protein
2656	 67.59	0	3053388..3054683	+	431	104781972	-	PSEEN2901	-	oxidoreductase
2657	 60.64	0	3054687..3054968	-	93	104781973	-	PSEEN2902	-	transcriptional regulator
2658	 56.77	-1	3054973..3055356	-	127	104781974	-	PSEEN2903	-	hypothetical protein
2659	 65.34	0	3055537..3056214	+	225	104781975	-	PSEEN2904	-	hypothetical protein
2660	 64.14	0	3056477..3057070	+	197	104781976	-	PSEEN2905	-	hypothetical protein
2661	 64.89	0	3057090..3057539	+	149	104781977	-	PSEEN2906	-	hypothetical protein
2662	 68.67	+1	3057661..3058608	+	315	104781978	-	PSEEN2907	-	hypothetical protein
2663	 64.71	0	3058657..3059268	+	203	104781979	-	PSEEN2908	-	hypothetical protein
2664	 68.42	0	3059434..3060288	+	284	104781980	-	PSEEN2909	-	hypothetical protein
2665	 65.53	0	3060353..3061318	-	321	104781981	-	PSEEN2910	-	AraC family transcriptional regulator
2666	 63.40	0	3061418..3062029	+	203	104781982	-	PSEEN2911	-	amino acid transporter LysE
2667	 67.08	0	3062030..3063229	-	399	104781983	-	PSEEN2912	-	major facilitator transporter
2668	 69.43	+1	3063551..3064456	-	301	104781984	-	PSEEN2913	-	LysR family transcriptional regulator
2669	 70.30	+1	3064531..3064860	+	109	104781985	-	PSEEN2914	-	hypothetical protein
2670	 66.32	0	3064848..3066272	-	474	104781986	-	PSEEN2915	-	multidrug efflux protein MATE family
2671	 65.82	0	3066323..3066916	+	197	104781987	-	PSEEN2916	-	TetR family transcriptional regulator
2672	 66.33	0	3067306..3069711	+	801	104781988	quiA	PSEEN2918	-	quinate dehydrogenase (pyrroloquinoline-quinone)
2673	 64.44	0	3070032..3071423	+	463	104781989	-	PSEEN2919	-	amino acid permease
2674	 66.67	0	3071438..3072190	-	250	104781990	-	PSEEN2920	-	hypothetical protein
2675	 64.88	0	3072296..3072967	+	223	104781991	-	PSEEN2921	-	hypothetical protein
2676	 65.02	0	3073026..3073934	-	302	104781992	-	PSEEN2922	-	hypothetical protein
2677	 63.80	0	3077304..3078140	+	278	104781993	-	PSEEN2925	-	hypothetical protein
2678	 65.00	0	3078265..3078864	+	199	104781994	-	PSEEN2926	-	hypothetical protein
2679	 66.84	0	3079052..3080221	+	389	104781995	-	PSEEN2927	-	hypothetical protein
2680	 66.19	0	3080180..3081229	-	349	104781996	-	PSEEN2928	-	hypothetical protein
2681	 65.85	0	3081363..3081974	-	203	104781997	-	PSEEN2929	-	azoreductase
2682	 67.22	0	3082108..3083010	+	300	104781998	-	PSEEN2930	-	LysR family transcriptional regulator
2683	 65.51	0	3083018..3083362	+	114	104781999	-	PSEEN2931	-	hypothetical protein
2684	 64.68	0	3083465..3083866	-	133	104782000	-	PSEEN2932	-	hypothetical protein
2685	 61.73	0	3083866..3084696	-	276	104782001	uppP	PSEEN2933	-	undecaprenyl pyrophosphate phosphatase
2686	 66.97	0	3084995..3086629	+	544	104782002	-	PSEEN2935	-	methyl-accepting chemotaxis transducer
2687	 57.10	-1	3086780..3088033	-	417	104782003	-	PSEEN2936	-	hypothetical protein
2688	 64.55	0	3088248..3088814	+	188	104782004	-	PSEEN2937	-	nicotinamide mononucleotide transporter PnuC
2689	 64.13	0	3088811..3089362	+	183	104782005	-	PSEEN2938	-	hypothetical protein
2690	 64.17	0	3089657..3090097	+	146	104782006	-	PSEEN2939	-	hypothetical protein
2691	 63.70	0	3090099..3090671	+	190	104782007	-	PSEEN2940	-	hypothetical protein
2692	 59.80	0	3090724..3092208	+	494	104782008	-	PSEEN2941	-	hypothetical protein
2693	 60.65	0	3092275..3092955	+	226	104782009	-	PSEEN2942	-	hypothetical protein
2694	 62.52	0	3092988..3093734	+	248	104782010	-	PSEEN2943	-	hypothetical protein
2695	 61.68	0	3093782..3095065	+	427	104782011	-	PSEEN2944	-	hypothetical protein
2696	 64.82	0	3095178..3097400	+	740	104782012	-	PSEEN2945	-	sulfatase
2697	 59.84	0	3097591..3098322	-	243	104782013	-	PSEEN2946	-	exopolysaccharide biosynthesis related tyrosine-protein kinase
2698	 61.38	0	3098409..3099977	-	522	104782014	-	PSEEN2947	-	exopolysaccharide transport protein
2699	 62.28	0	3099999..3100955	-	318	104782015	-	PSEEN2948	-	hypothetical protein
2700	 59.20	-1	3101142..3101663	-	173	104782016	-	PSEEN2949	-	polysaccharide export protein
2701	 51.74	-2	3102014..3102214	-	66	104782017	-	PSEEN2950	-	hypothetical protein
2702	 62.38	0	3102624..3103742	-	372	104782018	-	PSEEN2951	-	hypothetical protein
2703	 60.26	0	3103788..3104942	-	384	104782019	-	PSEEN2952	-	hypothetical protein
2704	 63.97	0	3105310..3109095	+	1261	104782020	-	PSEEN2953	-	hypothetical protein
2705	 66.31	0	3109099..3111333	-	744	104782021	-	PSEEN2954	-	diguanylate cyclase/phosphodiesterase
2706	 64.22	0	3111481..3114753	+	1090	104782022	-	PSEEN2955	-	hypothetical protein
2707	 64.14	0	3114869..3116488	+	539	104782023	-	PSEEN2956	-	NAD-dependent aldehyde dehydrogenase
2708	 63.25	0	3116660..3117127	+	155	104782024	-	PSEEN2957	-	hypothetical protein
2709	 64.07	0	3117214..3118407	+	397	104782025	-	PSEEN2958	-	hypothetical protein
2710	 65.19	0	3118505..3119653	-	382	104782026	adhB	PSEEN2959	-	alcohol dehydrogenase II (
2711	 67.11	0	3119799..3121361	-	520	104782027	ilvA-1	PSEEN2960	-	threonine dehydratase
2712	 63.01	0	3121549..3121986	-	145	104782028	-	PSEEN2961	-	hypothetical protein
2713	 60.45	0	3122085..3122261	-	58	104782029	-	PSEEN2962	-	hypothetical protein
2714	 66.41	0	3122304..3123458	+	384	104782030	wecB	PSEEN2963	-	UDP-N-acetyl glucosamine-2-epimerase
2715	 64.92	0	3123455..3125629	+	724	104782031	nfrB	PSEEN2964	-	bacteriophage N4 adsorption protein B
2716	 68.70	+1	3125626..3128628	+	1000	104782032	-	PSEEN2965	-	hypothetical protein
2717	 66.19	0	3128628..3129467	+	279	104782033	-	PSEEN2966	-	hypothetical protein
2718	 62.44	0	3129651..3130739	+	362	104782034	-	PSEEN2967	-	diguanylate cyclase
2719	 64.82	0	3130786..3132084	-	432	104782035	-	PSEEN2968	-	sensor histidine kinase
2720	 66.52	0	3132091..3132792	-	233	104782036	-	PSEEN2969	-	response regulator
2721	 69.39	+1	3132952..3134127	+	391	104782037	-	PSEEN2970	-	multidrug efflux RND membrane fusion protein
2722	 66.60	0	3134139..3137261	+	1040	104782038	-	PSEEN2971	-	multidrug/solvent RND transporter, AcrB-like
2723	 64.76	0	3137323..3137898	+	191	104782039	mobA	PSEEN2972	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2724	 65.35	0	3138018..3139688	-	556	104782040	-	PSEEN2973	-	acyl-CoA synthetase
2725	 63.19	0	3139860..3140981	-	373	104782041	-	PSEEN2974	-	quinohemoprotein amine dehydrogenase 40 kDa subunit
2726	 64.81	0	3141001..3141324	-	107	104782042	qhnDH	PSEEN2975	-	quinohemoprotein amine dehydrogenase gamma subunit
2727	 64.22	0	3141326..3142756	-	476	104782043	-	PSEEN2976	-	hypothetical protein
2728	 68.01	0	3142793..3144358	-	521	104782044	-	PSEEN2977	-	quinohemoprotein amine dehydrogenase 60 kDa subunit
2729	 67.80	0	3144804..3146297	+	497	104782045	-	PSEEN2978	-	NAD-dependent aldehyde dehydrogenase
2730	 63.31	0	3146512..3147315	-	267	104782046	-	PSEEN2979	-	hypothetical protein
2731	 65.59	0	3147540..3147818	+	92	104782047	-	PSEEN2980	-	hypothetical protein
2732	 62.63	0	3147815..3148507	-	230	104782048	-	PSEEN2981	-	hypothetical protein
2733	 63.43	0	3148724..3149125	+	133	104782049	-	PSEEN2982	-	MerR family transcriptional regulator
2734	 66.89	0	3149146..3150045	+	299	104782050	mvaB	PSEEN2983	-	hydroxymethylglutaryl-CoA lyase
2735	 65.53	0	3150581..3151108	-	175	104782051	-	PSEEN2986	-	Mg2+ transporter
2736	 64.26	0	3151476..3152885	+	469	104782052	-	PSEEN2987	-	iron-sulfur cluster-binding protein
2737	 66.88	0	3152936..3154345	+	469	104782053	-	PSEEN2988	-	GntR family transcriptional regulator
2738	 64.86	0	3154400..3156442	+	680	104782054	-	PSEEN2989	-	sensory box histidine kinase/response regulator (hybrid)
2739	 66.92	0	3156449..3157228	-	259	104782055	-	PSEEN2990	-	short chain dehydrogenase/reductase family oxidoreductase
2740	 64.71	0	3157357..3158892	-	511	104782056	-	PSEEN2992	-	EmrB/QacA family drug resistance transporter
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.