IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2586	 71.16	+1	2969275..2970231	-	318	104781902	-	PSEEN2827	-	peptidylprolyl isomerase
2587	 64.52	0	2970228..2970692	-	154	104781903	-	PSEEN2828	-	hypothetical protein
2588	 68.36	0	2970722..2971369	-	215	104781904	-	PSEEN2829	-	hypothetical protein
2589	 65.84	0	2971385..2973085	-	566	104781905	-	PSEEN2830	-	hypothetical protein
2590	 74.61	+2	2973124..2973765	-	213	104781906	-	PSEEN2831	-	hypothetical protein
2591	 66.90	0	2973816..2974241	-	141	104781907	-	PSEEN2832	-	biopolymer transport protein ExbD
2592	 69.60	+1	2974252..2976057	-	601	104781908	-	PSEEN2833	-	solvent/drug/ferric siderophore transport protein ExbB
2593	 67.49	0	2976089..2977669	-	526	104781909	-	PSEEN2834	-	hypothetical protein
2594	 65.05	0	2977705..2978322	-	205	104781910	-	PSEEN2835	-	hypothetical protein
2595	 62.68	0	2978665..2979969	-	434	104781911	-	PSEEN2836	-	hypothetical protein
2596	 67.50	0	2980080..2980922	-	280	104781912	csgG	PSEEN2837	-	curli production assembly/transport component csgG precursor
2597	 68.10	0	2980956..2981375	-	139	104781913	-	PSEEN2838	-	curli production assembly/transport component CsgF precursor
2598	 65.90	0	2981372..2981764	-	130	104781914	-	PSEEN2839	-	curli assembly protein CsgE
2599	 70.98	+1	2981761..2982270	-	169	104781915	-	PSEEN2840	-	hypothetical protein
2600	 65.60	0	2982257..2982631	-	124	104781916	-	PSEEN2841	-	secretion protein
2601	 69.00	+1	2982637..2983107	-	156	104781917	-	PSEEN2842	-	secretion type II protein related to protein G. signal peptide
2602	 66.01	0	2983104..2984939	-	611	104781918	-	PSEEN2843	-	secretion type II protein related to gspD (secretin) protein.
2603	 66.87	0	2984936..2985436	-	166	104781919	-	PSEEN2844	-	hypothetical protein
2604	 69.20	+1	2985436..2985987	-	183	104781920	-	PSEEN2845	-	hypothetical protein
2605	 70.72	+1	2985974..2986516	-	180	104781921	-	PSEEN2846	-	hypothetical protein
2606	 72.00	+1	2986518..2987267	-	249	104781922	-	PSEEN2847	-	hypothetical protein
2607	 67.14	0	2987281..2988966	-	561	104781923	-	PSEEN2848	-	type II secretion system protein E.
2608	 64.78	0	2989024..2989554	-	176	104781924	-	PSEEN2849	-	response regulator
2609	 64.80	0	2989797..2990438	-	213	104781925	-	PSEEN2850	-	hypothetical protein
2610	 66.73	0	2990571..2992064	-	497	104781926	-	PSEEN2851	-	cytochrome c
2611	 66.99	0	2992205..2992831	-	208	104781927	-	PSEEN2852	-	SCO1/SenC family protein
2612	 67.13	0	2992858..2993511	-	217	104781928	-	PSEEN2853	-	Sco1/SenC family protein
2613	 68.94	+1	2993508..2995487	-	659	104781929	-	PSEEN2854	-	hypothetical protein
2614	 61.36	0	2995825..2996088	-	87	104781930	-	PSEEN2855	-	hypothetical protein
2615	 62.10	0	2996120..2996338	-	72	104781931	-	PSEEN2856	-	hypothetical protein
2616	 67.45	0	2996947..3002790	-	1947	104781932	-	PSEEN2857	-	hypothetical protein
2617	 68.01	0	3002939..3005029	-	696	104781933	-	PSEEN2858	-	diguanylate cyclase/phosphodiesterase
2618	 56.11	-1	3005684..3005986	+	100	104781934	-	PSEEN2860	-	hypothetical protein
2619	 46.39	-2	3006436..3006948	+	170	104781935	-	PSEEN2862	-	hypothetical protein
2620	 59.82	0	3007458..3008654	+	398	104781936	-	PSEEN2864	-	IS256 family transposase
2621	 56.62	-1	3008805..3012755	-	1316	104781937	-	PSEEN2865	-	hypothetical protein
2622	 58.14	-1	3012886..3013014	-	42	104781938	-	PSEEN2866	-	hypothetical protein
2623	 69.75	+1	3013070..3013912	-	280	104781939	-	PSEEN2867	-	LysR family transcriptional regulator
2624	 66.57	0	3014258..3015274	+	338	104781940	-	PSEEN2868	-	Zinc-dependent dehydrogenase
2625	 69.63	+1	3015280..3015987	-	235	104781941	-	PSEEN2869	-	LuxR family transcriptional regulator
2626	 63.39	0	3015993..3016847	-	284	104781942	-	PSEEN2870	-	chaperone protein HchA
2627	 69.86	+1	3017012..3017575	-	187	104781943	-	PSEEN2871	-	hypothetical protein
2628	 68.42	0	3017572..3018543	-	323	104781944	-	PSEEN2872	-	xanthine dehydrogenase accessory factor
2629	 66.67	0	3018547..3019758	-	403	104781945	-	PSEEN2873	-	cytochrome c
2630	 65.37	0	3019761..3020300	-	179	104781946	-	PSEEN2874	-	oxidase, small subunit
2631	 65.54	0	3020293..3023124	-	943	104781947	-	PSEEN2875	-	oxidase, large subunit
2632	 66.05	0	3024354..3026627	+	757	104781948	-	PSEEN2876	-	diguanylate cyclase/phosphodiesterase
2633	 65.86	0	3026615..3027487	+	290	104781949	-	PSEEN2877	-	phosphonate-binding periplasmic protein
2634	 69.38	+1	3027600..3028742	-	380	104781950	-	PSEEN2878	-	glycerate kinase
2635	 65.66	0	3028866..3029963	-	365	104781951	-	PSEEN2879	-	sugar diacid utilization regulator
2636	 65.46	0	3030126..3031451	+	441	104781952	-	PSEEN2880	-	major facilitator transporter
2637	 67.84	0	3031524..3032627	-	367	104781953	-	PSEEN2881	-	L-aminopeptidase D-Ala-esterase/amidase
2638	 67.84	0	3032645..3034009	-	454	104781954	-	PSEEN2882	-	amino acid permease
2639	 62.88	0	3034305..3035096	+	263	104781955	-	PSEEN2884	-	LuxR family transcriptional regulator
2640	 65.22	0	3035167..3036549	-	460	104781956	-	PSEEN2885	-	putative aminotransferase
2641	 68.48	0	3036572..3038062	-	496	104781957	-	PSEEN2886	-	aldehyde dehydrogenase
2642	 66.90	0	3038131..3038979	-	282	104781958	-	PSEEN2887	-	LuxR family transcriptional regulator
2643	 65.83	0	3039412..3040482	+	356	104781959	-	PSEEN2888	-	enoyl-CoA hydratase
2644	 65.80	0	3040499..3041650	+	383	104781960	acdA	PSEEN2889	-	acyl-CoA dehydrogenase
2645	 65.32	0	3041835..3042725	+	296	104781961	-	PSEEN2890	-	universal stress protein
2646	 63.22	0	3042814..3043335	-	173	104781962	-	PSEEN2891	-	hypothetical protein
2647	 63.24	0	3043545..3044273	-	242	104781963	-	PSEEN2892	-	hypothetical protein
2648	 64.86	0	3044373..3044816	-	147	104781964	-	PSEEN2893	-	hypothetical protein
2649	 65.53	0	3044926..3045804	-	292	104781965	-	PSEEN2894	-	LysR family transcriptional regulator
2650	 67.03	0	3045904..3047289	+	461	104781966	-	PSEEN2895	-	aldehyde dehydrogenase
2651	 65.68	0	3047462..3048271	+	269	104781967	panB-2	PSEEN2896	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2652	 67.10	0	3048259..3049653	-	464	104781968	-	PSEEN2897	-	transcription regulator MocR
2653	 64.95	0	3049712..3050641	-	309	104781969	-	PSEEN2898	-	AraC family transcriptional regulator
2654	 65.49	0	3050762..3052120	+	452	104781970	-	PSEEN2899	-	glutamine synthetase
2655	 62.99	0	3052286..3053374	+	362	104781971	-	PSEEN2900	-	putrescine ABC transporter, periplasmic putrescine-binding protein
2656	 67.59	0	3053388..3054683	+	431	104781972	-	PSEEN2901	-	oxidoreductase
2657	 60.64	0	3054687..3054968	-	93	104781973	-	PSEEN2902	-	transcriptional regulator
2658	 56.77	-1	3054973..3055356	-	127	104781974	-	PSEEN2903	-	hypothetical protein
2659	 65.34	0	3055537..3056214	+	225	104781975	-	PSEEN2904	-	hypothetical protein
2660	 64.14	0	3056477..3057070	+	197	104781976	-	PSEEN2905	-	hypothetical protein
2661	 64.89	0	3057090..3057539	+	149	104781977	-	PSEEN2906	-	hypothetical protein
2662	 68.67	+1	3057661..3058608	+	315	104781978	-	PSEEN2907	-	hypothetical protein
2663	 64.71	0	3058657..3059268	+	203	104781979	-	PSEEN2908	-	hypothetical protein
2664	 68.42	0	3059434..3060288	+	284	104781980	-	PSEEN2909	-	hypothetical protein
2665	 65.53	0	3060353..3061318	-	321	104781981	-	PSEEN2910	-	AraC family transcriptional regulator
2666	 63.40	0	3061418..3062029	+	203	104781982	-	PSEEN2911	-	amino acid transporter LysE
2667	 67.08	0	3062030..3063229	-	399	104781983	-	PSEEN2912	-	major facilitator transporter
2668	 69.43	+1	3063551..3064456	-	301	104781984	-	PSEEN2913	-	LysR family transcriptional regulator
2669	 70.30	+1	3064531..3064860	+	109	104781985	-	PSEEN2914	-	hypothetical protein
2670	 66.32	0	3064848..3066272	-	474	104781986	-	PSEEN2915	-	multidrug efflux protein MATE family
2671	 65.82	0	3066323..3066916	+	197	104781987	-	PSEEN2916	-	TetR family transcriptional regulator
2672	 66.33	0	3067306..3069711	+	801	104781988	quiA	PSEEN2918	-	quinate dehydrogenase (pyrroloquinoline-quinone)
2673	 64.44	0	3070032..3071423	+	463	104781989	-	PSEEN2919	-	amino acid permease
2674	 66.67	0	3071438..3072190	-	250	104781990	-	PSEEN2920	-	hypothetical protein
2675	 64.88	0	3072296..3072967	+	223	104781991	-	PSEEN2921	-	hypothetical protein
2676	 65.02	0	3073026..3073934	-	302	104781992	-	PSEEN2922	-	hypothetical protein
2677	 63.80	0	3077304..3078140	+	278	104781993	-	PSEEN2925	-	hypothetical protein
2678	 65.00	0	3078265..3078864	+	199	104781994	-	PSEEN2926	-	hypothetical protein
2679	 66.84	0	3079052..3080221	+	389	104781995	-	PSEEN2927	-	hypothetical protein
2680	 66.19	0	3080180..3081229	-	349	104781996	-	PSEEN2928	-	hypothetical protein
2681	 65.85	0	3081363..3081974	-	203	104781997	-	PSEEN2929	-	azoreductase
2682	 67.22	0	3082108..3083010	+	300	104781998	-	PSEEN2930	-	LysR family transcriptional regulator
2683	 65.51	0	3083018..3083362	+	114	104781999	-	PSEEN2931	-	hypothetical protein
2684	 64.68	0	3083465..3083866	-	133	104782000	-	PSEEN2932	-	hypothetical protein
2685	 61.73	0	3083866..3084696	-	276	104782001	uppP	PSEEN2933	-	undecaprenyl pyrophosphate phosphatase
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.