IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2565	 67.83	0	2943703..2945757	+	684	104781881	paaN	PSEEN2806	-	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase
2566	 57.21	-1	2945813..2946817	-	334	104781882	-	PSEEN2807	-	hypothetical protein
2567	 63.20	0	2946958..2947764	-	268	104781883	-	PSEEN2808	-	Tn4652 cointegrate resolution protein T
2568	 67.03	0	2947838..2948380	-	180	104781884	-	PSEEN2809	-	hypothetical protein
2569	 64.53	0	2948565..2950106	-	513	104781885	katB	PSEEN2810	-	catalase (hydroperoxidase II)
2570	 65.36	0	2950357..2951046	-	229	104781886	-	PSEEN2811	-	hypothetical protein
2571	 62.59	0	2951225..2952181	+	318	104781887	-	PSEEN2812	-	hypothetical protein
2572	 62.24	0	2952191..2952619	-	142	104781888	-	PSEEN2813	-	MerR family transcriptional regulator
2573	 64.02	0	2952735..2953565	+	276	104781889	cpo	PSEEN2814	-	non-heme chloroperoxidase
2574	 60.70	0	2953593..2954531	-	312	104781890	-	PSEEN2815	-	Dyp-type peroxidase
2575	 64.26	0	2954841..2955629	+	262	104781891	-	PSEEN2816	-	transporter of formate/nitrite family
2576	 67.89	0	2955715..2956941	-	408	104781892	-	PSEEN2817	-	hypothetical protein
2577	 69.20	+1	2957027..2957698	-	223	104781893	-	PSEEN2818	-	hypothetical protein
2578	 67.71	0	2957688..2959415	-	575	104781894	-	PSEEN2819	-	ABC efflux transporter, permease/ATP-binding protein
2579	 68.65	+1	2959419..2961332	-	637	104781895	-	PSEEN2820	-	sigma-54 dependent transcriptional regulator
2580	 69.86	+1	2961791..2963137	+	448	104781896	-	PSEEN2821	-	hypothetical protein
2581	 68.99	+1	2963158..2965398	+	746	104781897	-	PSEEN2822	-	hypothetical protein
2582	 68.79	+1	2965414..2965884	+	156	104781898	-	PSEEN2823	-	curli fiber surface-exposed nucleator CsgB
2583	 63.83	0	2965904..2967349	+	481	104781899	-	PSEEN2824	-	curlin; signal peptide
2584	 68.37	0	2967528..2968172	+	214	104781900	alkB	PSEEN2825	-	oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, repair of alkylated DNA
2585	 66.67	0	2968258..2969223	-	321	104781901	-	PSEEN2826	-	transcriptional regulator
2586	 71.16	+1	2969275..2970231	-	318	104781902	-	PSEEN2827	-	peptidylprolyl isomerase
2587	 64.52	0	2970228..2970692	-	154	104781903	-	PSEEN2828	-	hypothetical protein
2588	 68.36	0	2970722..2971369	-	215	104781904	-	PSEEN2829	-	hypothetical protein
2589	 65.84	0	2971385..2973085	-	566	104781905	-	PSEEN2830	-	hypothetical protein
2590	 74.61	+2	2973124..2973765	-	213	104781906	-	PSEEN2831	-	hypothetical protein
2591	 66.90	0	2973816..2974241	-	141	104781907	-	PSEEN2832	-	biopolymer transport protein ExbD
2592	 69.60	+1	2974252..2976057	-	601	104781908	-	PSEEN2833	-	solvent/drug/ferric siderophore transport protein ExbB
2593	 67.49	0	2976089..2977669	-	526	104781909	-	PSEEN2834	-	hypothetical protein
2594	 65.05	0	2977705..2978322	-	205	104781910	-	PSEEN2835	-	hypothetical protein
2595	 62.68	0	2978665..2979969	-	434	104781911	-	PSEEN2836	-	hypothetical protein
2596	 67.50	0	2980080..2980922	-	280	104781912	csgG	PSEEN2837	-	curli production assembly/transport component csgG precursor
2597	 68.10	0	2980956..2981375	-	139	104781913	-	PSEEN2838	-	curli production assembly/transport component CsgF precursor
2598	 65.90	0	2981372..2981764	-	130	104781914	-	PSEEN2839	-	curli assembly protein CsgE
2599	 70.98	+1	2981761..2982270	-	169	104781915	-	PSEEN2840	-	hypothetical protein
2600	 65.60	0	2982257..2982631	-	124	104781916	-	PSEEN2841	-	secretion protein
2601	 69.00	+1	2982637..2983107	-	156	104781917	-	PSEEN2842	-	secretion type II protein related to protein G. signal peptide
2602	 66.01	0	2983104..2984939	-	611	104781918	-	PSEEN2843	-	secretion type II protein related to gspD (secretin) protein.
2603	 66.87	0	2984936..2985436	-	166	104781919	-	PSEEN2844	-	hypothetical protein
2604	 69.20	+1	2985436..2985987	-	183	104781920	-	PSEEN2845	-	hypothetical protein
2605	 70.72	+1	2985974..2986516	-	180	104781921	-	PSEEN2846	-	hypothetical protein
2606	 72.00	+1	2986518..2987267	-	249	104781922	-	PSEEN2847	-	hypothetical protein
2607	 67.14	0	2987281..2988966	-	561	104781923	-	PSEEN2848	-	type II secretion system protein E.
2608	 64.78	0	2989024..2989554	-	176	104781924	-	PSEEN2849	-	response regulator
2609	 64.80	0	2989797..2990438	-	213	104781925	-	PSEEN2850	-	hypothetical protein
2610	 66.73	0	2990571..2992064	-	497	104781926	-	PSEEN2851	-	cytochrome c
2611	 66.99	0	2992205..2992831	-	208	104781927	-	PSEEN2852	-	SCO1/SenC family protein
2612	 67.13	0	2992858..2993511	-	217	104781928	-	PSEEN2853	-	Sco1/SenC family protein
2613	 68.94	+1	2993508..2995487	-	659	104781929	-	PSEEN2854	-	hypothetical protein
2614	 61.36	0	2995825..2996088	-	87	104781930	-	PSEEN2855	-	hypothetical protein
2615	 62.10	0	2996120..2996338	-	72	104781931	-	PSEEN2856	-	hypothetical protein
2616	 67.45	0	2996947..3002790	-	1947	104781932	-	PSEEN2857	-	hypothetical protein
2617	 68.01	0	3002939..3005029	-	696	104781933	-	PSEEN2858	-	diguanylate cyclase/phosphodiesterase
2618	 56.11	-1	3005684..3005986	+	100	104781934	-	PSEEN2860	-	hypothetical protein
2619	 46.39	-2	3006436..3006948	+	170	104781935	-	PSEEN2862	-	hypothetical protein
2620	 59.82	0	3007458..3008654	+	398	104781936	-	PSEEN2864	-	IS256 family transposase
2621	 56.62	-1	3008805..3012755	-	1316	104781937	-	PSEEN2865	-	hypothetical protein
2622	 58.14	-1	3012886..3013014	-	42	104781938	-	PSEEN2866	-	hypothetical protein
2623	 69.75	+1	3013070..3013912	-	280	104781939	-	PSEEN2867	-	LysR family transcriptional regulator
2624	 66.57	0	3014258..3015274	+	338	104781940	-	PSEEN2868	-	Zinc-dependent dehydrogenase
2625	 69.63	+1	3015280..3015987	-	235	104781941	-	PSEEN2869	-	LuxR family transcriptional regulator
2626	 63.39	0	3015993..3016847	-	284	104781942	-	PSEEN2870	-	chaperone protein HchA
2627	 69.86	+1	3017012..3017575	-	187	104781943	-	PSEEN2871	-	hypothetical protein
2628	 68.42	0	3017572..3018543	-	323	104781944	-	PSEEN2872	-	xanthine dehydrogenase accessory factor
2629	 66.67	0	3018547..3019758	-	403	104781945	-	PSEEN2873	-	cytochrome c
2630	 65.37	0	3019761..3020300	-	179	104781946	-	PSEEN2874	-	oxidase, small subunit
2631	 65.54	0	3020293..3023124	-	943	104781947	-	PSEEN2875	-	oxidase, large subunit
2632	 66.05	0	3024354..3026627	+	757	104781948	-	PSEEN2876	-	diguanylate cyclase/phosphodiesterase
2633	 65.86	0	3026615..3027487	+	290	104781949	-	PSEEN2877	-	phosphonate-binding periplasmic protein
2634	 69.38	+1	3027600..3028742	-	380	104781950	-	PSEEN2878	-	glycerate kinase
2635	 65.66	0	3028866..3029963	-	365	104781951	-	PSEEN2879	-	sugar diacid utilization regulator
2636	 65.46	0	3030126..3031451	+	441	104781952	-	PSEEN2880	-	major facilitator transporter
2637	 67.84	0	3031524..3032627	-	367	104781953	-	PSEEN2881	-	L-aminopeptidase D-Ala-esterase/amidase
2638	 67.84	0	3032645..3034009	-	454	104781954	-	PSEEN2882	-	amino acid permease
2639	 62.88	0	3034305..3035096	+	263	104781955	-	PSEEN2884	-	LuxR family transcriptional regulator
2640	 65.22	0	3035167..3036549	-	460	104781956	-	PSEEN2885	-	putative aminotransferase
2641	 68.48	0	3036572..3038062	-	496	104781957	-	PSEEN2886	-	aldehyde dehydrogenase
2642	 66.90	0	3038131..3038979	-	282	104781958	-	PSEEN2887	-	LuxR family transcriptional regulator
2643	 65.83	0	3039412..3040482	+	356	104781959	-	PSEEN2888	-	enoyl-CoA hydratase
2644	 65.80	0	3040499..3041650	+	383	104781960	acdA	PSEEN2889	-	acyl-CoA dehydrogenase
2645	 65.32	0	3041835..3042725	+	296	104781961	-	PSEEN2890	-	universal stress protein
2646	 63.22	0	3042814..3043335	-	173	104781962	-	PSEEN2891	-	hypothetical protein
2647	 63.24	0	3043545..3044273	-	242	104781963	-	PSEEN2892	-	hypothetical protein
2648	 64.86	0	3044373..3044816	-	147	104781964	-	PSEEN2893	-	hypothetical protein
2649	 65.53	0	3044926..3045804	-	292	104781965	-	PSEEN2894	-	LysR family transcriptional regulator
2650	 67.03	0	3045904..3047289	+	461	104781966	-	PSEEN2895	-	aldehyde dehydrogenase
2651	 65.68	0	3047462..3048271	+	269	104781967	panB-2	PSEEN2896	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2652	 67.10	0	3048259..3049653	-	464	104781968	-	PSEEN2897	-	transcription regulator MocR
2653	 64.95	0	3049712..3050641	-	309	104781969	-	PSEEN2898	-	AraC family transcriptional regulator
2654	 65.49	0	3050762..3052120	+	452	104781970	-	PSEEN2899	-	glutamine synthetase
2655	 62.99	0	3052286..3053374	+	362	104781971	-	PSEEN2900	-	putrescine ABC transporter, periplasmic putrescine-binding protein
2656	 67.59	0	3053388..3054683	+	431	104781972	-	PSEEN2901	-	oxidoreductase
2657	 60.64	0	3054687..3054968	-	93	104781973	-	PSEEN2902	-	transcriptional regulator
2658	 56.77	-1	3054973..3055356	-	127	104781974	-	PSEEN2903	-	hypothetical protein
2659	 65.34	0	3055537..3056214	+	225	104781975	-	PSEEN2904	-	hypothetical protein
2660	 64.14	0	3056477..3057070	+	197	104781976	-	PSEEN2905	-	hypothetical protein
2661	 64.89	0	3057090..3057539	+	149	104781977	-	PSEEN2906	-	hypothetical protein
2662	 68.67	+1	3057661..3058608	+	315	104781978	-	PSEEN2907	-	hypothetical protein
2663	 64.71	0	3058657..3059268	+	203	104781979	-	PSEEN2908	-	hypothetical protein
2664	 68.42	0	3059434..3060288	+	284	104781980	-	PSEEN2909	-	hypothetical protein
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.