IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2478	 65.45	0	2834414..2835979	-	521	104781794	-	PSEEN2707	-	EmrB/QacA family drug resistance transporter
2479	 68.62	0	2835976..2837052	-	358	104781795	-	PSEEN2708	-	HlyD family secretion protein
2480	 67.78	0	2837112..2837651	-	179	104781796	-	PSEEN2709	-	hypothetical protein
2481	 66.99	0	2837809..2839350	-	513	104781797	-	PSEEN2710	-	transcriptional regulator
2482	 68.15	0	2839556..2840299	+	247	104781798	-	PSEEN2711	-	hypothetical protein
2483	 63.87	0	2840340..2840768	+	142	104781799	-	PSEEN2712	-	hypothetical protein
2484	 64.98	0	2840785..2841378	-	197	104781800	-	PSEEN2713	-	hypothetical protein
2485	 64.73	0	2841666..2842595	-	309	104781801	-	PSEEN2714	-	hypothetical protein
2486	 57.33	-1	2842764..2842988	-	74	104781802	-	PSEEN2715	-	hypothetical protein
2487	 69.05	+1	2843245..2852217	+	2990	104781803	-	PSEEN2716	-	non-ribosomal peptide synthetase
2488	 69.14	+1	2852214..2856329	+	1371	104781804	-	PSEEN2717	-	non-ribosomal peptide synthetase
2489	 69.31	+1	2856329..2865361	+	3010	104781805	-	PSEEN2718	-	polyketide synthase (terminal component)
2490	 68.65	+1	2865372..2866025	+	217	104781806	-	PSEEN2719	-	hypothetical protein
2491	 64.83	0	2866007..2866876	+	289	104781807	-	PSEEN2720	-	dioxygenase, TauD
2492	 66.84	0	2867018..2867602	-	194	104781808	-	PSEEN2721	-	hypothetical protein
2493	 66.67	0	2867709..2868743	-	344	104781809	-	PSEEN2722	-	hypothetical protein
2494	 64.55	0	2868747..2869265	-	172	104781810	-	PSEEN2723	-	acetyltransferase
2495	 48.35	-2	2869531..2870256	+	241	104781811	-	PSEEN2724	-	hypothetical protein
2496	 66.25	0	2870432..2871634	+	400	104781812	-	PSEEN2726	-	hypothetical protein
2497	 66.62	0	2871621..2873768	+	715	104781813	-	PSEEN2727	-	hypothetical protein
2498	 62.41	0	2873815..2874237	+	140	104781814	-	PSEEN2728	-	lipoprotein
2499	 57.80	-1	2874384..2874992	+	202	104781815	-	PSEEN2729	-	hypothetical protein
2500	 64.48	0	2875125..2876132	+	335	104781816	-	PSEEN2731	-	alcohol dehydrogenase, zinc-containing
2501	 63.00	0	2876198..2876524	+	108	104781817	-	PSEEN2732	-	hypothetical protein
2502	 63.55	0	2876701..2877309	+	202	104781818	-	PSEEN2733	-	glutathione S-transferase
2503	 63.54	0	2877388..2878026	-	212	104781819	-	PSEEN2734	-	hypothetical protein
2504	 62.35	0	2878135..2879037	+	300	104781820	-	PSEEN2735	-	LysR family transcriptional regulator
2505	 65.37	0	2879042..2879812	-	256	104781821	-	PSEEN2736	-	short chain dehydrogenase/reductase family oxidoreductase
2506	 66.85	0	2879922..2880464	+	180	104781822	-	PSEEN2737	-	hypothetical protein
2507	 64.09	0	2880461..2881003	+	180	104781823	-	PSEEN2738	-	lipoprotein
2508	 66.54	0	2881044..2882585	+	513	104781824	-	PSEEN2739	-	photolyase
2509	 63.84	0	2882566..2882742	+	58	104781825	-	PSEEN2740	-	hypothetical protein
2510	 61.46	0	2882908..2884041	+	377	104781826	-	PSEEN2741	-	Serine-pyruvate transaminase
2511	 57.97	-1	2884064..2884615	+	183	104781827	-	PSEEN2742	-	hypothetical protein
2512	 54.27	-2	2885246..2886229	+	327	104781828	-	PSEEN2746	-	hypothetical protein
2513	 59.38	-1	2886257..2887285	+	342	104781829	-	PSEEN2747	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2514	 59.72	0	2887371..2887874	+	167	104781830	-	PSEEN2748	-	oxidoreductase
2515	 68.49	0	2887866..2889347	-	493	104781831	-	PSEEN2749	-	hypothetical protein
2516	 65.69	0	2889347..2891500	-	717	104781832	-	PSEEN2750	-	outer membrane ferric siderophore receptor
2517	 68.97	+1	2891572..2891961	-	129	104781833	-	PSEEN2751	-	hypothetical protein
2518	 64.16	0	2892237..2892914	+	225	104781834	-	PSEEN2752	-	hypothetical protein
2519	 63.32	0	2892904..2894367	+	487	104781835	-	PSEEN2753	-	long-chain-fatty-acid-CoA ligase
2520	 62.26	0	2894376..2895056	+	226	104781836	-	PSEEN2754	-	hypothetical protein
2521	 64.68	0	2895043..2895849	+	268	104781837	-	PSEEN2755	-	short chain dehydrogenase
2522	 62.46	0	2895846..2896487	+	213	104781838	-	PSEEN2756	-	hypothetical protein
2523	 62.90	0	2896490..2897152	+	220	104781839	-	PSEEN2757	-	DNA-binding response regulator
2524	 64.18	0	2897149..2898513	+	454	104781840	-	PSEEN2758	-	sensor histidine kinase
2525	 65.75	0	2898816..2899142	+	108	104781841	-	PSEEN2759	-	hypothetical protein
2526	 66.23	0	2899426..2900331	+	301	104781842	-	PSEEN2760	-	oxidoreductase
2527	 62.84	0	2900562..2901398	+	278	104781843	-	PSEEN2761	-	Ku protein
2528	 70.12	+1	2901411..2902076	-	221	104781844	-	PSEEN2762	-	glycosyl transferase, group 2 family protein
2529	 67.33	0	2902073..2902672	-	199	104781845	-	PSEEN2763	-	methyltransferase
2530	 68.61	0	2902669..2903439	-	256	104781846	-	PSEEN2764	-	hypothetical protein
2531	 70.32	+1	2903436..2904476	-	346	104781847	-	PSEEN2765	-	acyl-CoA dehydrogenase
2532	 63.86	0	2904473..2904721	-	82	104781848	-	PSEEN2766	-	hypothetical protein
2533	 66.26	0	2904721..2907183	-	820	104781849	ligD	PSEEN2767	-	ATP-dependent DNA ligase
2534	 67.41	0	2907394..2907798	+	134	104781850	-	PSEEN2768	-	hypothetical protein
2535	 58.01	-1	2907798..2908028	+	76	104781851	-	PSEEN2769	-	metallothionein
2536	 60.61	0	2908547..2908843	-	98	104781852	-	PSEEN2771	-	hypothetical protein
2537	 66.88	0	2909132..2910049	+	305	104781853	-	PSEEN2772	-	AraC family transcriptional regulator
2538	 67.22	0	2910513..2911412	+	299	104781854	-	PSEEN2773	-	alpha/beta fold family hydrolase
2539	 65.50	0	2911456..2912394	+	312	104781855	-	PSEEN2774	-	alpha/beta fold family hydrolase
2540	 68.20	0	2912451..2913365	+	304	104781856	-	PSEEN2775	-	AraC family transcriptional regulator
2541	 65.48	0	2913499..2914254	-	251	104781857	-	PSEEN2776	-	HlyD family multidrug efflux protein
2542	 54.31	-2	2914603..2918550	+	1315	104781858	-	PSEEN2777	-	hypothetical protein
2543	 49.12	-2	2919179..2919349	+	56	104781859	-	PSEEN2780	-	hypothetical protein
2544	 56.31	-1	2919609..2919917	+	102	104781860	-	PSEEN2782	-	hypothetical protein
2545	 64.05	0	2920577..2922184	+	535	104781861	-	PSEEN2784	-	chemotaxis transducer
2546	 63.55	0	2922595..2923653	+	352	104781862	-	PSEEN2785	-	hypothetical protein
2547	 61.08	0	2923717..2924700	+	327	104781863	-	PSEEN2786	-	fatty acid desaturase
2548	 59.71	0	2924992..2928153	+	1053	104781864	-	PSEEN2788	-	insecticidal toxin
2549	 63.64	0	2928298..2929221	-	307	104781865	paaX	PSEEN2789	-	transcriptional repressor for phenylacetic acid degradation
2550	 69.17	+1	2929281..2929880	-	199	104781866	paaY	PSEEN2790	-	regulatory phaM protein
2551	 68.99	+1	2930217..2930990	+	257	104781867	phaA	PSEEN2791	-	enoyl-CoA hydratase-isomerase
2552	 66.92	0	2931010..2931804	+	264	104781868	paaB	PSEEN2792	-	enoyl-CoA hydratase
2553	 67.79	0	2931807..2933324	+	505	104781869	paaC	PSEEN2793	-	3-hydroxybutyryl-CoA dehydrogenase
2554	 66.22	0	2933317..2933766	+	149	104781870	paaD	PSEEN2794	-	phenylacetic acid degradation protein
2555	 71.17	+1	2933759..2934979	+	406	104781871	pcaF-2	PSEEN2795	-	beta-ketoadipyl CoA thiolase
2556	 63.86	0	2935074..2936393	+	439	104781872	paaF	PSEEN2796	-	phenylacetyl-CoA ligase
2557	 63.43	0	2936678..2937667	+	329	104781873	paaG	PSEEN2798	-	phenylacetate-CoA oxygenase subunit PaaA
2558	 65.60	0	2937694..2937975	+	93	104781874	paaL	PSEEN2799	-	phenylacetate-CoA oxygenase subunit PaaB
2559	 66.67	0	2937984..2938742	+	252	104781875	paaI	PSEEN2800	-	phenylacetic acid degradation, subunit of multicomponent oxygenase
2560	 69.33	+1	2938729..2939253	+	174	104781876	paaJ	PSEEN2801	-	ring-hydroxylation complex protein 3
2561	 66.30	0	2939269..2940345	+	358	104781877	paaK	PSEEN2802	-	ring-hydroxylation complex protein 4
2562	 65.05	0	2940542..2940850	+	102	104781878	-	PSEEN2803	-	hypothetical protein
2563	 66.03	0	2940847..2942409	+	520	104781879	actP	PSEEN2804	-	acetate permease
2564	 65.00	0	2942421..2943677	+	418	104781880	phaK	PSEEN2805	-	phenylacetic acid-specific porin
2565	 67.83	0	2943703..2945757	+	684	104781881	paaN	PSEEN2806	-	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase
2566	 57.21	-1	2945813..2946817	-	334	104781882	-	PSEEN2807	-	hypothetical protein
2567	 63.20	0	2946958..2947764	-	268	104781883	-	PSEEN2808	-	Tn4652 cointegrate resolution protein T
2568	 67.03	0	2947838..2948380	-	180	104781884	-	PSEEN2809	-	hypothetical protein
2569	 64.53	0	2948565..2950106	-	513	104781885	katB	PSEEN2810	-	catalase (hydroperoxidase II)
2570	 65.36	0	2950357..2951046	-	229	104781886	-	PSEEN2811	-	hypothetical protein
2571	 62.59	0	2951225..2952181	+	318	104781887	-	PSEEN2812	-	hypothetical protein
2572	 62.24	0	2952191..2952619	-	142	104781888	-	PSEEN2813	-	MerR family transcriptional regulator
2573	 64.02	0	2952735..2953565	+	276	104781889	cpo	PSEEN2814	-	non-heme chloroperoxidase
2574	 60.70	0	2953593..2954531	-	312	104781890	-	PSEEN2815	-	Dyp-type peroxidase
2575	 64.26	0	2954841..2955629	+	262	104781891	-	PSEEN2816	-	transporter of formate/nitrite family
2576	 67.89	0	2955715..2956941	-	408	104781892	-	PSEEN2817	-	hypothetical protein
2577	 69.20	+1	2957027..2957698	-	223	104781893	-	PSEEN2818	-	hypothetical protein
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.