IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2374	 61.49	0	2705132..2706907	+	591	104781690	-	PSEEN2590	-	glutathione-regulated potassium-proton antiporter
2375	 56.35	-1	2706904..2707446	+	180	104781691	-	PSEEN2591	-	hypothetical protein
2376	 57.22	-1	2707871..2708833	-	320	104781692	-	PSEEN2592	-	LysR family transcriptional regulator
2377	 61.84	0	2708976..2710031	+	351	104781693	mhbD	PSEEN2593	-	gentisate 1,2-dioxygenase
2378	 63.66	0	2710049..2710747	+	232	104781694	mhbB	PSEEN2594	-	fumarylpyruvate hydrolase
2379	 60.59	0	2711115..2711756	+	213	104781695	mhbI	PSEEN2595	-	maleylpyruvate isomerase
2380	 56.95	-1	2711793..2713007	+	404	104781696	mhbM	PSEEN2596	-	salicylate hydroxylase
2381	 52.04	-2	2713261..2713677	-	138	104781697	-	PSEEN2597	-	hypothetical protein
2382	 49.69	-2	2713703..2713861	+	52	104781698	-	PSEEN2598	-	hypothetical protein
2383	 60.66	0	2714128..2715042	-	304	104781699	-	PSEEN2599	-	LysR family transcriptional regulator
2384	 60.99	0	2715145..2716113	+	322	104781700	-	PSEEN2601	-	glycine betaine ABC transporter, periplasmic binding protein
2385	 62.44	0	2716188..2717039	+	283	104781701	-	PSEEN2602	-	glycine betaine ABC transporter, permease protein
2386	 60.07	0	2717036..2717869	+	277	104781702	-	PSEEN2603	-	glycine betaine ABC transporter, ATP-binding protein
2387	 63.45	0	2717882..2719405	+	507	104781703	hutH-2	PSEEN2604	-	histidine ammonia-lyase
2388	 55.65	-1	2719529..2719873	+	114	104781704	-	PSEEN2605	-	hypothetical protein
2389	 64.32	0	2720009..2720947	+	312	104781705	-	PSEEN2606	-	arginase
2390	 57.16	-1	2721027..2722604	-	525	104781706	-	PSEEN2607	-	hypothetical protein
2391	 56.76	-1	2722603..2722824	+	73	104781707	-	PSEEN2608	-	hypothetical protein
2392	 61.50	0	2722938..2724659	+	573	104781708	-	PSEEN2609	-	hypothetical protein
2393	 62.65	0	2724720..2725940	-	406	104781709	-	PSEEN2610	-	major facilitator transporter
2394	 60.37	0	2726103..2726483	-	126	104781710	-	PSEEN2611	-	AraC family transcriptional regulator
2395	 59.21	-1	2726903..2727130	+	75	104781711	-	PSEEN2612	-	hypothetical protein
2396	 63.24	0	2727135..2728244	+	369	104781712	adhC-1	PSEEN2613	-	glutathione-dependent formaldehyde dehydrogenase (alcohol dehydrogenase class III)
2397	 63.91	0	2728278..2728676	+	132	104781713	-	PSEEN2614	-	hypothetical protein
2398	 61.27	0	2728974..2729807	+	277	104781714	-	PSEEN2616	-	esterase
2399	 64.11	0	2729824..2731116	+	430	104781715	-	PSEEN2617	-	PNDR family NADH dehydrogenase
2400	 58.70	-1	2731311..2731586	+	91	104781716	-	PSEEN2618	-	regulator protein FrmR
2401	 63.95	0	2732146..2733285	+	379	104781717	-	PSEEN2619	-	hypothetical protein
2402	 66.97	0	2733342..2735993	+	883	104781718	-	PSEEN2620	-	excinuclease ABC, UvrA-like
2403	 65.24	0	2736224..2737066	+	280	104781719	mdh	PSEEN2621	-	malate dehydrogenase
2404	 65.93	0	2737145..2738371	-	408	104781720	-	PSEEN2622	-	major facilitator transporter
2405	 63.06	0	2744627..2745430	-	267	104781721	-	PSEEN2628	-	hypothetical protein
2406	 66.34	0	2745599..2746513	-	304	104781722	-	PSEEN2629	-	LysR family transcriptional regulator
2407	 64.61	0	2746720..2747742	+	340	104781723	-	PSEEN2630	-	quinone oxidoreductase
2408	 66.33	0	2748151..2749641	+	496	104781724	-	PSEEN2632	-	hypothetical protein
2409	 68.94	+1	2749547..2750602	-	351	104781725	-	PSEEN2633	-	hypothetical protein
2410	 61.49	0	2750692..2753088	-	798	104781726	-	PSEEN2634	-	hypothetical protein
2411	 63.38	0	2753099..2754253	-	384	104781727	-	PSEEN2635	-	hypothetical protein
2412	 66.18	0	2754232..2755668	-	478	104781728	-	PSEEN2636	-	hypothetical protein
2413	 66.91	0	2755655..2756890	-	411	104781729	-	PSEEN2637	-	hypothetical protein
2414	 63.50	0	2756887..2757771	-	294	104781730	-	PSEEN2638	-	TatD family hydrolase
2415	 69.10	+1	2757831..2758571	-	246	104781731	-	PSEEN2639	-	hypothetical protein
2416	 67.00	0	2758568..2759458	-	296	104781732	-	PSEEN2640	-	hypothetical protein
2417	 66.03	0	2759455..2761329	-	624	104781733	aroB	PSEEN2641	-	3-dehydroquinate synthase
2418	 64.91	0	2761773..2763425	+	550	104781734	-	PSEEN2643	-	hypothetical protein
2419	 67.29	0	2763422..2765677	+	751	104781735	-	PSEEN2644	-	hypothetical protein
2420	 67.34	0	2765756..2767393	+	545	104781736	pgm	PSEEN2645	-	phosphoglucomutase
2421	 67.34	0	2767613..2768500	+	295	104781737	-	PSEEN2646	-	hypothetical protein
2422	 62.83	0	2768629..2769045	-	138	104781738	-	PSEEN2647	-	hypothetical protein
2423	 68.64	+1	2769045..2770361	-	438	104781739	-	PSEEN2648	-	PNDR family (class II) oxidoreductase
2424	 71.09	+1	2770780..2771457	+	225	104781740	-	PSEEN2649	-	hypothetical protein
2425	 65.89	0	2771450..2772610	+	386	104781741	-	PSEEN2650	-	acetylornithine deacetylase
2426	 64.55	0	2772777..2773106	-	109	104781742	-	PSEEN2652	-	hypothetical protein
2427	 64.67	0	2773181..2773831	-	216	104781743	-	PSEEN2653	-	hypothetical protein
2428	 67.73	0	2773999..2774748	+	249	104781744	-	PSEEN2654	-	GntR family transcriptional regulator
2429	 69.70	+1	2774839..2776419	-	526	104781745	-	PSEEN2655	-	ketoglutarate semialdehyde dehydrogenase
2430	 67.57	0	2776563..2778116	-	517	104781746	garD	PSEEN2656	-	D-galactarate dehydrogenase
2431	 64.22	0	2778194..2779543	-	449	104781747	garP	PSEEN2657	-	D-galactonate permease
2432	 66.78	0	2779659..2780576	-	305	104781748	kdgD	PSEEN2658	-	5-dehydro-4-deoxyglucarate dehydratase
2433	 64.57	0	2780952..2781761	-	269	104781749	-	PSEEN2659	-	glutamine amidopeptidase (class I)
2434	 69.77	+1	2782083..2783723	-	546	104781750	-	PSEEN2661	-	hypothetical protein
2435	 65.66	0	2784082..2784873	-	263	104781751	-	PSEEN2663	-	amino acid ABC transporter, ATP-binding protein
2436	 69.96	+1	2784898..2786142	-	414	104781752	-	PSEEN2664	-	D-amino acid dehydrogenase, small subunit family protein
2437	 64.98	0	2786159..2786869	-	236	104781753	-	PSEEN2665	-	amino acid ABC transporter, permease protein
2438	 66.25	0	2786866..2787585	-	239	104781754	-	PSEEN2666	-	amino acid ABC transporter, permease protein
2439	 63.75	0	2787753..2788505	-	250	104781755	-	PSEEN2667	-	amino acid ABC transporter, periplasmic binding protein
2440	 65.03	0	2788532..2789449	-	305	104781756	-	PSEEN2668	-	RpiR family transcriptional regulator
2441	 69.17	+1	2789566..2790564	+	332	104781757	-	PSEEN2669	-	malate dehydrogenase
2442	 67.42	0	2790809..2792005	+	398	104781758	tyrB-2	PSEEN2670	-	aromatic amino acid aminotransferase
2443	 66.04	0	2792246..2793526	+	426	104781759	sdaC	PSEEN2671	-	serine transport protein
2444	 64.47	0	2793695..2794195	+	166	104781760	tpx	PSEEN2672	-	thiol peroxidase
2445	 67.44	0	2794442..2795734	+	430	104781761	mdtA	PSEEN2673	-	multidrug resistance efflux pump; membrane fusion protein
2446	 67.18	0	2795731..2798829	+	1032	104781762	mdtB	PSEEN2674	-	multidrug resistance efflux transporter
2447	 65.32	0	2798826..2801936	+	1036	104781763	mdtC	PSEEN2675	-	multidrug resistance efflux pump
2448	 66.53	0	2801933..2803417	+	494	104781764	-	PSEEN2676	-	outer membrane protein precursor
2449	 65.71	0	2803570..2803881	-	103	104781765	-	PSEEN2677	-	hypothetical protein
2450	 67.51	0	2803996..2805300	-	434	104781766	-	PSEEN2678	-	hypothetical protein
2451	 65.71	0	2805608..2805817	-	69	104781767	-	PSEEN2679	-	hypothetical protein
2452	 68.88	+1	2806066..2806698	-	210	104781768	-	PSEEN2680	-	hypothetical protein
2453	 63.49	0	2806933..2807751	+	272	104781769	-	PSEEN2681	-	hypothetical protein
2454	 59.82	0	2807968..2808186	+	72	104781770	-	PSEEN2682	-	hypothetical protein
2455	 67.29	0	2808310..2809272	-	320	104781771	-	PSEEN2683	-	ribonuclease Z
2456	 69.61	+1	2809357..2810376	-	339	104781772	-	PSEEN2684	-	alcohol dehydrogenase
2457	 65.68	0	2810523..2811539	+	338	104781773	-	PSEEN2685	-	cation transporter
2458	 65.47	0	2811490..2812323	-	277	104781774	-	PSEEN2686	-	hypothetical protein
2459	 67.11	0	2812325..2813008	-	227	104781775	-	PSEEN2687	-	hypothetical protein
2460	 69.77	+1	2813307..2815271	+	654	104781776	-	PSEEN2688	-	hypothetical protein
2461	 68.98	+1	2815340..2816290	+	316	104781777	-	PSEEN2689	-	hypothetical protein
2462	 70.14	+1	2816283..2817317	+	344	104781778	-	PSEEN2690	-	hypothetical protein
2463	 69.81	+1	2817373..2819310	+	645	104781779	-	PSEEN2691	-	cation-transporting P-type ATPase
2464	 65.54	0	2819357..2820514	-	385	104781780	-	PSEEN2692	-	hypothetical protein
2465	 64.60	0	2820893..2821327	-	144	104781781	-	PSEEN2693	-	hypothetical protein
2466	 65.61	0	2821555..2822694	-	379	104781782	-	PSEEN2694	-	sensory box histidine kinase
2467	 67.68	0	2822739..2823428	-	229	104781783	-	PSEEN2695	-	response regulator
2468	 62.50	0	2823588..2823779	-	63	104781784	-	PSEEN2696	-	hypothetical protein
2469	 59.74	0	2824024..2826996	+	990	104781785	-	PSEEN2697	-	insecticidal toxin, SepC/Tcc class
2470	 62.10	0	2827094..2827531	-	145	104781786	-	PSEEN2698	-	hypothetical protein
2471	 64.87	0	2827515..2829074	-	519	104781787	-	PSEEN2699	-	diguanylate cyclase
2472	 67.91	0	2829353..2829835	-	160	104781788	-	PSEEN2701	-	hypothetical protein
2473	 66.43	0	2829841..2831097	-	418	104781789	-	PSEEN2702	-	cyclopropane-fatty-acyl-phospholipid synthase
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.