IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2335	 67.46	0	2665935..2667329	+	464	104781651	-	PSEEN2547	-	oxidoreductase
2336	 68.54	0	2667609..2668946	+	445	104781652	-	PSEEN2548	-	hypothetical protein
2337	 66.89	0	2668965..2670791	+	608	104781653	-	PSEEN2549	-	hypothetical protein
2338	 68.23	0	2670837..2673197	+	786	104781654	-	PSEEN2550	-	RND family multidrug efflux transporter
2339	 69.11	+1	2673207..2674190	+	327	104781655	-	PSEEN2551	-	hypothetical protein
2340	 66.76	0	2674330..2675448	+	372	104781656	-	PSEEN2552	-	amine dehydrogenase (heavy chain)
2341	 68.29	0	2675442..2675996	+	184	104781657	-	PSEEN2553	-	hypothetical protein
2342	 69.02	+1	2676044..2676595	+	183	104781658	-	PSEEN2554	-	methylamine utilization protein MauD
2343	 68.76	+1	2676592..2677116	+	174	104781659	-	PSEEN2555	-	amine dehydrogenase (light chain)
2344	 68.53	0	2677120..2677548	+	142	104781660	-	PSEEN2556	-	hypothetical protein
2345	 68.99	+1	2677563..2678165	+	200	104781661	-	PSEEN2557	-	cytochrome c
2346	 65.12	0	2678316..2678831	+	171	104781662	-	PSEEN2558	-	hypothetical protein
2347	 63.40	0	2678828..2679532	+	234	104781663	-	PSEEN2559	-	NAD(P)H quinone oxidoreductase
2348	 67.43	0	2679677..2680459	+	260	104781664	-	PSEEN2560	-	enoyl-CoA hydratase
2349	 63.75	0	2680652..2681473	+	273	104781665	-	PSEEN2561	-	MipA family protein
2350	 62.99	0	2681477..2681938	-	153	104781666	-	PSEEN2562	-	dioxygenase
2351	 61.49	0	2681966..2682139	-	57	104781667	-	PSEEN2563	-	hypothetical protein
2352	 65.50	0	2682339..2683109	+	256	104781668	-	PSEEN2564	-	ribonuclease
2353	 64.90	0	2683114..2684472	-	452	104781669	-	PSEEN2565	-	glutamine synthetase
2354	 62.74	0	2684944..2685579	+	211	104781670	-	PSEEN2567	-	hypothetical protein
2355	 62.78	0	2685617..2686672	+	351	104781671	chiC	PSEEN2568	-	chitinase ChiC (small isoform)
2356	 67.78	0	2686811..2688337	+	508	104781672	-	PSEEN2569	-	DNA-3-methyladenine glycosylase II
2357	 58.84	-1	2688386..2688781	-	131	104781673	-	PSEEN2570	-	hypothetical protein
2358	 61.23	0	2689017..2689439	+	140	104781674	-	PSEEN2571	-	ring-cleaving dioxygenase
2359	 58.01	-1	2689758..2691155	+	465	104781675	-	PSEEN2572	-	hypothetical protein
2360	 67.66	0	2691187..2692095	-	302	104781676	-	PSEEN2573	-	LysR family transcriptional regulator
2361	 54.40	-2	2692240..2692614	+	124	104781677	-	PSEEN2574	-	hypothetical protein
2362	 59.90	0	2692837..2693220	+	127	104781678	-	PSEEN2576	-	hypothetical protein
2363	 57.99	-1	2693365..2693652	+	95	104781679	-	PSEEN2577	-	hypothetical protein
2364	 66.26	0	2694142..2694879	+	245	104781680	-	PSEEN2578	-	hypothetical protein
2365	 58.92	-1	2695027..2695323	-	98	104781681	-	PSEEN2579	-	hypothetical protein
2366	 59.49	-1	2696233..2697180	-	315	104781682	-	PSEEN2582	-	Zinc-dependent hydroxylase
2367	 61.53	0	2697177..2698871	-	564	104781683	-	PSEEN2583	-	choline dehydrogenase
2368	 60.52	0	2699058..2699984	+	308	104781684	-	PSEEN2584	-	LysR family transcriptional regulator
2369	 60.57	0	2700122..2700925	+	267	104781685	-	PSEEN2585	-	class II aldolase
2370	 62.53	0	2700947..2702398	+	483	104781686	-	PSEEN2586	-	aldehyde dehydrogenase
2371	 61.92	0	2702548..2703285	+	245	104781687	-	PSEEN2587	-	short chain dehydrogenase/reductase family oxidoreductase
2372	 62.00	0	2703315..2704214	+	299	104781688	-	PSEEN2588	-	short chain dehydrogenase/reductase family oxidoreductase
2373	 58.91	-1	2704265..2705038	+	257	104781689	-	PSEEN2589	-	short chain dehydrogenase
2374	 61.49	0	2705132..2706907	+	591	104781690	-	PSEEN2590	-	glutathione-regulated potassium-proton antiporter
2375	 56.35	-1	2706904..2707446	+	180	104781691	-	PSEEN2591	-	hypothetical protein
2376	 57.22	-1	2707871..2708833	-	320	104781692	-	PSEEN2592	-	LysR family transcriptional regulator
2377	 61.84	0	2708976..2710031	+	351	104781693	mhbD	PSEEN2593	-	gentisate 1,2-dioxygenase
2378	 63.66	0	2710049..2710747	+	232	104781694	mhbB	PSEEN2594	-	fumarylpyruvate hydrolase
2379	 60.59	0	2711115..2711756	+	213	104781695	mhbI	PSEEN2595	-	maleylpyruvate isomerase
2380	 56.95	-1	2711793..2713007	+	404	104781696	mhbM	PSEEN2596	-	salicylate hydroxylase
2381	 52.04	-2	2713261..2713677	-	138	104781697	-	PSEEN2597	-	hypothetical protein
2382	 49.69	-2	2713703..2713861	+	52	104781698	-	PSEEN2598	-	hypothetical protein
2383	 60.66	0	2714128..2715042	-	304	104781699	-	PSEEN2599	-	LysR family transcriptional regulator
2384	 60.99	0	2715145..2716113	+	322	104781700	-	PSEEN2601	-	glycine betaine ABC transporter, periplasmic binding protein
2385	 62.44	0	2716188..2717039	+	283	104781701	-	PSEEN2602	-	glycine betaine ABC transporter, permease protein
2386	 60.07	0	2717036..2717869	+	277	104781702	-	PSEEN2603	-	glycine betaine ABC transporter, ATP-binding protein
2387	 63.45	0	2717882..2719405	+	507	104781703	hutH-2	PSEEN2604	-	histidine ammonia-lyase
2388	 55.65	-1	2719529..2719873	+	114	104781704	-	PSEEN2605	-	hypothetical protein
2389	 64.32	0	2720009..2720947	+	312	104781705	-	PSEEN2606	-	arginase
2390	 57.16	-1	2721027..2722604	-	525	104781706	-	PSEEN2607	-	hypothetical protein
2391	 56.76	-1	2722603..2722824	+	73	104781707	-	PSEEN2608	-	hypothetical protein
2392	 61.50	0	2722938..2724659	+	573	104781708	-	PSEEN2609	-	hypothetical protein
2393	 62.65	0	2724720..2725940	-	406	104781709	-	PSEEN2610	-	major facilitator transporter
2394	 60.37	0	2726103..2726483	-	126	104781710	-	PSEEN2611	-	AraC family transcriptional regulator
2395	 59.21	-1	2726903..2727130	+	75	104781711	-	PSEEN2612	-	hypothetical protein
2396	 63.24	0	2727135..2728244	+	369	104781712	adhC-1	PSEEN2613	-	glutathione-dependent formaldehyde dehydrogenase (alcohol dehydrogenase class III)
2397	 63.91	0	2728278..2728676	+	132	104781713	-	PSEEN2614	-	hypothetical protein
2398	 61.27	0	2728974..2729807	+	277	104781714	-	PSEEN2616	-	esterase
2399	 64.11	0	2729824..2731116	+	430	104781715	-	PSEEN2617	-	PNDR family NADH dehydrogenase
2400	 58.70	-1	2731311..2731586	+	91	104781716	-	PSEEN2618	-	regulator protein FrmR
2401	 63.95	0	2732146..2733285	+	379	104781717	-	PSEEN2619	-	hypothetical protein
2402	 66.97	0	2733342..2735993	+	883	104781718	-	PSEEN2620	-	excinuclease ABC, UvrA-like
2403	 65.24	0	2736224..2737066	+	280	104781719	mdh	PSEEN2621	-	malate dehydrogenase
2404	 65.93	0	2737145..2738371	-	408	104781720	-	PSEEN2622	-	major facilitator transporter
2405	 63.06	0	2744627..2745430	-	267	104781721	-	PSEEN2628	-	hypothetical protein
2406	 66.34	0	2745599..2746513	-	304	104781722	-	PSEEN2629	-	LysR family transcriptional regulator
2407	 64.61	0	2746720..2747742	+	340	104781723	-	PSEEN2630	-	quinone oxidoreductase
2408	 66.33	0	2748151..2749641	+	496	104781724	-	PSEEN2632	-	hypothetical protein
2409	 68.94	+1	2749547..2750602	-	351	104781725	-	PSEEN2633	-	hypothetical protein
2410	 61.49	0	2750692..2753088	-	798	104781726	-	PSEEN2634	-	hypothetical protein
2411	 63.38	0	2753099..2754253	-	384	104781727	-	PSEEN2635	-	hypothetical protein
2412	 66.18	0	2754232..2755668	-	478	104781728	-	PSEEN2636	-	hypothetical protein
2413	 66.91	0	2755655..2756890	-	411	104781729	-	PSEEN2637	-	hypothetical protein
2414	 63.50	0	2756887..2757771	-	294	104781730	-	PSEEN2638	-	TatD family hydrolase
2415	 69.10	+1	2757831..2758571	-	246	104781731	-	PSEEN2639	-	hypothetical protein
2416	 67.00	0	2758568..2759458	-	296	104781732	-	PSEEN2640	-	hypothetical protein
2417	 66.03	0	2759455..2761329	-	624	104781733	aroB	PSEEN2641	-	3-dehydroquinate synthase
2418	 64.91	0	2761773..2763425	+	550	104781734	-	PSEEN2643	-	hypothetical protein
2419	 67.29	0	2763422..2765677	+	751	104781735	-	PSEEN2644	-	hypothetical protein
2420	 67.34	0	2765756..2767393	+	545	104781736	pgm	PSEEN2645	-	phosphoglucomutase
2421	 67.34	0	2767613..2768500	+	295	104781737	-	PSEEN2646	-	hypothetical protein
2422	 62.83	0	2768629..2769045	-	138	104781738	-	PSEEN2647	-	hypothetical protein
2423	 68.64	+1	2769045..2770361	-	438	104781739	-	PSEEN2648	-	PNDR family (class II) oxidoreductase
2424	 71.09	+1	2770780..2771457	+	225	104781740	-	PSEEN2649	-	hypothetical protein
2425	 65.89	0	2771450..2772610	+	386	104781741	-	PSEEN2650	-	acetylornithine deacetylase
2426	 64.55	0	2772777..2773106	-	109	104781742	-	PSEEN2652	-	hypothetical protein
2427	 64.67	0	2773181..2773831	-	216	104781743	-	PSEEN2653	-	hypothetical protein
2428	 67.73	0	2773999..2774748	+	249	104781744	-	PSEEN2654	-	GntR family transcriptional regulator
2429	 69.70	+1	2774839..2776419	-	526	104781745	-	PSEEN2655	-	ketoglutarate semialdehyde dehydrogenase
2430	 67.57	0	2776563..2778116	-	517	104781746	garD	PSEEN2656	-	D-galactarate dehydrogenase
2431	 64.22	0	2778194..2779543	-	449	104781747	garP	PSEEN2657	-	D-galactonate permease
2432	 66.78	0	2779659..2780576	-	305	104781748	kdgD	PSEEN2658	-	5-dehydro-4-deoxyglucarate dehydratase
2433	 64.57	0	2780952..2781761	-	269	104781749	-	PSEEN2659	-	glutamine amidopeptidase (class I)
2434	 69.77	+1	2782083..2783723	-	546	104781750	-	PSEEN2661	-	hypothetical protein
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.