IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2279	 62.00	0	2593576..2596341	+	921	104781595	-	PSEEN2485	-	insecticidal toxin SepC/TccC
2280	 59.47	-1	2596862..2597542	+	226	104781596	-	PSEEN2487	-	hypothetical protein
2281	 60.12	0	2597735..2599507	+	590	104781597	-	PSEEN2488	-	hypothetical protein
2282	 67.72	0	2599646..2601538	-	630	104781598	-	PSEEN2489	-	penicillin-binding protein 2
2283	 62.97	0	2601775..2605698	-	1307	104781599	-	PSEEN2490	-	hypothetical protein
2284	 62.23	0	2605868..2606971	-	367	104781600	-	PSEEN2491	-	hypothetical protein
2285	 65.68	0	2607081..2609303	-	740	104781601	bauA	PSEEN2492	-	TonB-dependent siderophore receptor BauA
2286	 65.45	0	2609518..2610504	-	328	104781602	bauB	PSEEN2493	-	ferric siderophore ABC transporter, periplasmic siderophore-binding protein bauB
2287	 63.98	0	2610501..2611283	-	260	104781603	bauE	PSEEN2494	-	ferric siderophore ABC transporter, ATP-binding protein BauE
2288	 65.93	0	2611280..2612230	-	316	104781604	bauC	PSEEN2495	-	ferric siderophore ABC transporter, permease protein BauC
2289	 65.49	0	2612227..2612991	-	254	104781605	bauD	PSEEN2496	-	ferric siderophore ABC transporter, permease protein
2290	 68.81	+1	2613171..2614988	-	605	104781606	-	PSEEN2497	-	ABC transporter, permease/ATP-binding protein
2291	 68.22	0	2614934..2616739	-	601	104781607	-	PSEEN2498	-	ABC transporter, permease/ATP-binding protein
2292	 64.39	0	2616891..2617418	-	175	104781608	-	PSEEN2499	-	RNA polymerase sigma-70 factor
2293	 65.51	0	2617631..2619790	+	719	104781609	-	PSEEN2500	-	non ribosomal peptide synthetase BasB
2294	 64.09	0	2620041..2621360	-	439	104781610	basC	PSEEN2502	-	L-lysine 6-monooxygenase (NADPH)
2295	 67.82	0	2621443..2625759	-	1438	104781611	basA/D	PSEEN2503	-	non-ribosomal peptide synthetase BasA/D
2296	 67.18	0	2625876..2627045	+	389	104781612	pmsC	PSEEN2504	-	isochorismate synthetase
2297	 66.67	0	2627065..2628900	+	611	104781613	pmsE	PSEEN2505	-	2,3-dihydroxybenzoate-AMP ligase
2298	 62.95	0	2628961..2630172	+	403	104781614	pmsA	PSEEN2506	-	histidine decarboxylase
2299	 60.38	0	2630204..2630521	+	105	104781615	psmB	PSEEN2507	-	isochorismate-pyruvate lyase
2300	 62.74	0	2630818..2631402	-	194	104781616	-	PSEEN2508	-	hypothetical protein
2301	 56.73	-1	2631399..2631851	-	150	104781617	-	PSEEN2509	-	hypothetical protein
2302	 49.38	-2	2631965..2632126	-	53	104781618	-	PSEEN2510	-	hypothetical protein
2303	 41.47	-2	2633963..2634343	-	126	104781619	-	PSEEN2513	-	hypothetical protein
2304	 63.77	0	2634340..2639004	-	1554	104781620	-	PSEEN2514	-	hypothetical protein
2305	 67.86	0	2639045..2639212	+	55	104781621	-	PSEEN2515	-	hypothetical protein
2306	 67.23	0	2639312..2640739	-	475	104781622	-	PSEEN2516	-	multidrug efflux protein NorA
2307	 35.24	-2	2640848..2640952	+	34	104781623	-	PSEEN2517	-	hypothetical protein
2308	 60.29	0	2641285..2641974	+	229	104781624	-	PSEEN2518	-	hypothetical protein
2309	 60.10	0	2641985..2642593	+	202	104781625	-	PSEEN2519	-	GTP cyclohydrolase I
2310	 65.15	0	2642606..2643133	+	175	104781626	-	PSEEN2520	-	6-pyruvoyl-tetrahydropterin synthase-like
2311	 66.58	0	2643126..2644271	+	381	104781627	-	PSEEN2521	-	inosine-5'-monophosphate dehydrogenase
2312	 64.67	0	2644288..2644737	+	149	104781628	-	PSEEN2522	-	hypothetical protein
2313	 64.16	0	2644698..2645936	+	412	104781629	-	PSEEN2523	-	hypothetical protein
2314	 65.03	0	2645948..2646436	+	162	104781630	-	PSEEN2524	-	MutT/NUDIX family hydrolase
2315	 45.71	-2	2646491..2646700	-	69	104781631	-	PSEEN2525	-	hypothetical protein
2316	 55.81	-1	2647480..2647737	-	85	104781632	-	PSEEN2526	-	hypothetical protein
2317	 61.60	0	2647730..2648440	-	236	104781633	-	PSEEN2527	-	hypothetical protein
2318	 65.38	0	2648560..2650971	-	803	104781634	-	PSEEN2529	-	TonB-dependent siderophore receptor
2319	 67.75	0	2651109..2652029	-	306	104781635	-	PSEEN2530	-	FecR-like transmembrane sensor
2320	 66.67	0	2652026..2652541	-	171	104781636	-	PSEEN2531	-	ECF subfamily RNA polymerase sigma factor
2321	 58.91	-1	2652978..2653235	+	85	104781637	-	PSEEN2532	-	hypothetical protein
2322	 61.11	0	2653381..2653668	+	95	104781638	-	PSEEN2533	-	hypothetical protein
2323	 55.27	-1	2653800..2654273	+	157	104781639	-	PSEEN2534	-	hypothetical protein
2324	 52.56	-2	2654595..2655806	+	403	104781640	-	PSEEN2536	-	hypothetical protein
2325	 44.34	-2	2656120..2656437	-	105	104781641	-	PSEEN2537	-	hypothetical protein
2326	 47.32	-2	2656578..2657564	-	328	104781642	-	PSEEN2538	-	hypothetical protein
2327	 63.32	0	2658097..2658813	+	238	104781643	-	PSEEN2539	-	hypothetical protein
2328	 49.59	-2	2659196..2659558	-	120	104781644	-	PSEEN2540	-	hypothetical protein
2329	 44.59	-2	2659598..2659828	-	76	104781645	-	PSEEN2541	-	hypothetical protein
2330	 60.03	0	2659854..2660426	-	190	104781646	-	PSEEN2542	-	PAS domain-containing protein
2331	 68.36	0	2660567..2661745	+	392	104781647	-	PSEEN2543	-	acetyl-CoA acetyltransferase
2332	 67.38	0	2661747..2663288	+	513	104781648	-	PSEEN2544	-	long-chain-fatty-acid--CoA ligase
2333	 64.06	0	2663331..2664671	+	446	104781649	-	PSEEN2545	-	major facilitator transporter
2334	 67.46	0	2664870..2665874	+	334	104781650	-	PSEEN2546	-	AraC family DNA-binding protein
2335	 67.46	0	2665935..2667329	+	464	104781651	-	PSEEN2547	-	oxidoreductase
2336	 68.54	0	2667609..2668946	+	445	104781652	-	PSEEN2548	-	hypothetical protein
2337	 66.89	0	2668965..2670791	+	608	104781653	-	PSEEN2549	-	hypothetical protein
2338	 68.23	0	2670837..2673197	+	786	104781654	-	PSEEN2550	-	RND family multidrug efflux transporter
2339	 69.11	+1	2673207..2674190	+	327	104781655	-	PSEEN2551	-	hypothetical protein
2340	 66.76	0	2674330..2675448	+	372	104781656	-	PSEEN2552	-	amine dehydrogenase (heavy chain)
2341	 68.29	0	2675442..2675996	+	184	104781657	-	PSEEN2553	-	hypothetical protein
2342	 69.02	+1	2676044..2676595	+	183	104781658	-	PSEEN2554	-	methylamine utilization protein MauD
2343	 68.76	+1	2676592..2677116	+	174	104781659	-	PSEEN2555	-	amine dehydrogenase (light chain)
2344	 68.53	0	2677120..2677548	+	142	104781660	-	PSEEN2556	-	hypothetical protein
2345	 68.99	+1	2677563..2678165	+	200	104781661	-	PSEEN2557	-	cytochrome c
2346	 65.12	0	2678316..2678831	+	171	104781662	-	PSEEN2558	-	hypothetical protein
2347	 63.40	0	2678828..2679532	+	234	104781663	-	PSEEN2559	-	NAD(P)H quinone oxidoreductase
2348	 67.43	0	2679677..2680459	+	260	104781664	-	PSEEN2560	-	enoyl-CoA hydratase
2349	 63.75	0	2680652..2681473	+	273	104781665	-	PSEEN2561	-	MipA family protein
2350	 62.99	0	2681477..2681938	-	153	104781666	-	PSEEN2562	-	dioxygenase
2351	 61.49	0	2681966..2682139	-	57	104781667	-	PSEEN2563	-	hypothetical protein
2352	 65.50	0	2682339..2683109	+	256	104781668	-	PSEEN2564	-	ribonuclease
2353	 64.90	0	2683114..2684472	-	452	104781669	-	PSEEN2565	-	glutamine synthetase
2354	 62.74	0	2684944..2685579	+	211	104781670	-	PSEEN2567	-	hypothetical protein
2355	 62.78	0	2685617..2686672	+	351	104781671	chiC	PSEEN2568	-	chitinase ChiC (small isoform)
2356	 67.78	0	2686811..2688337	+	508	104781672	-	PSEEN2569	-	DNA-3-methyladenine glycosylase II
2357	 58.84	-1	2688386..2688781	-	131	104781673	-	PSEEN2570	-	hypothetical protein
2358	 61.23	0	2689017..2689439	+	140	104781674	-	PSEEN2571	-	ring-cleaving dioxygenase
2359	 58.01	-1	2689758..2691155	+	465	104781675	-	PSEEN2572	-	hypothetical protein
2360	 67.66	0	2691187..2692095	-	302	104781676	-	PSEEN2573	-	LysR family transcriptional regulator
2361	 54.40	-2	2692240..2692614	+	124	104781677	-	PSEEN2574	-	hypothetical protein
2362	 59.90	0	2692837..2693220	+	127	104781678	-	PSEEN2576	-	hypothetical protein
2363	 57.99	-1	2693365..2693652	+	95	104781679	-	PSEEN2577	-	hypothetical protein
2364	 66.26	0	2694142..2694879	+	245	104781680	-	PSEEN2578	-	hypothetical protein
2365	 58.92	-1	2695027..2695323	-	98	104781681	-	PSEEN2579	-	hypothetical protein
2366	 59.49	-1	2696233..2697180	-	315	104781682	-	PSEEN2582	-	Zinc-dependent hydroxylase
2367	 61.53	0	2697177..2698871	-	564	104781683	-	PSEEN2583	-	choline dehydrogenase
2368	 60.52	0	2699058..2699984	+	308	104781684	-	PSEEN2584	-	LysR family transcriptional regulator
2369	 60.57	0	2700122..2700925	+	267	104781685	-	PSEEN2585	-	class II aldolase
2370	 62.53	0	2700947..2702398	+	483	104781686	-	PSEEN2586	-	aldehyde dehydrogenase
2371	 61.92	0	2702548..2703285	+	245	104781687	-	PSEEN2587	-	short chain dehydrogenase/reductase family oxidoreductase
2372	 62.00	0	2703315..2704214	+	299	104781688	-	PSEEN2588	-	short chain dehydrogenase/reductase family oxidoreductase
2373	 58.91	-1	2704265..2705038	+	257	104781689	-	PSEEN2589	-	short chain dehydrogenase
2374	 61.49	0	2705132..2706907	+	591	104781690	-	PSEEN2590	-	glutathione-regulated potassium-proton antiporter
2375	 56.35	-1	2706904..2707446	+	180	104781691	-	PSEEN2591	-	hypothetical protein
2376	 57.22	-1	2707871..2708833	-	320	104781692	-	PSEEN2592	-	LysR family transcriptional regulator
2377	 61.84	0	2708976..2710031	+	351	104781693	mhbD	PSEEN2593	-	gentisate 1,2-dioxygenase
2378	 63.66	0	2710049..2710747	+	232	104781694	mhbB	PSEEN2594	-	fumarylpyruvate hydrolase
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.