IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1937	 67.84	0	2214982..2216259	-	425	104781253	metY	PSEEN2118	-	O-acetylhomoserine aminocarboxypropyltransferase
1938	 62.94	0	2216460..2216942	+	160	104781254	-	PSEEN2119	-	hypothetical protein
1939	 49.65	-2	2217086..2217655	+	189	104781255	-	PSEEN2120	-	hypothetical protein
1940	 44.31	-2	2218177..2218431	+	84	104781256	-	PSEEN2122	-	hypothetical protein
1941	 66.03	0	2218450..2219397	-	315	104781257	-	PSEEN2123	-	electron transporter, SCO1/SenC family protein/cytochrome c
1942	 66.84	0	2219490..2222885	-	1131	104781258	-	PSEEN2124	-	hypothetical protein
1943	 68.81	+1	2223124..2223870	+	248	104781259	-	PSEEN2125	-	hypothetical protein
1944	 58.97	-1	2223923..2224702	-	259	104781260	-	PSEEN2126	-	hypothetical protein
1945	 63.11	0	2224947..2225678	+	243	104781261	-	PSEEN2128	-	hypothetical protein
1946	 65.33	0	2225800..2226774	-	324	104781262	-	PSEEN2129	-	dioxygenase, beta subunit
1947	 63.37	0	2226839..2227960	-	373	104781263	-	PSEEN2130	-	dioxygenase, alpha subunit
1948	 65.34	0	2228089..2229519	-	476	162139700	-	PSEEN2131	-	putative transporter
1949	 64.56	0	2229931..2231022	-	363	104781265	-	PSEEN2132	-	tartrate dehydrogenase
1950	 66.89	0	2231117..2232028	+	303	104781266	-	PSEEN2133	-	LysR family transcriptional regulator
1951	 65.61	0	2232118..2232687	-	189	104781267	-	PSEEN2134	-	acetyltransferase
1952	 68.70	+1	2232766..2233110	-	114	104781268	-	PSEEN2135	-	carboxymuconolactone decarboxylase
1953	 61.89	0	2233201..2234100	-	299	104781269	-	PSEEN2136	-	aspartyl/asparaginyl beta-hydroxylase
1954	 69.23	+1	2234425..2234970	+	181	104781270	-	PSEEN2137	-	2'-5' RNA ligase
1955	 68.00	0	2234934..2236361	-	475	104781271	-	PSEEN2138	-	ABC transporter ATPase
1956	 69.21	+1	2236352..2237137	-	261	104781272	-	PSEEN2139	-	thioesterase
1957	 68.53	0	2237142..2237570	-	142	104781273	-	PSEEN2140	-	hypothetical protein
1958	 69.72	+1	2237574..2238425	-	283	104781274	-	PSEEN2141	-	O-methyltransferase
1959	 69.41	+1	2238439..2239821	-	460	104781275	-	PSEEN2142	-	multidrug efflux protein MATE family
1960	 68.26	0	2239896..2241275	-	459	104781276	-	PSEEN2143	-	sensor histidine kinase
1961	 63.61	0	2241241..2241633	-	130	104781277	-	PSEEN2144	-	response regulator
1962	 67.19	0	2242326..2243864	-	512	104781278	-	PSEEN2146	-	hypothetical protein
1963	 68.03	0	2243851..2244435	-	194	104781279	-	PSEEN2147	-	hypothetical protein
1964	 69.93	+1	2244432..2245043	-	203	104781280	-	PSEEN2148	-	hypothetical protein
1965	 69.81	+1	2245040..2248990	-	1316	104781281	-	PSEEN2149	-	non-ribosomal peptide synthetase
1966	 70.02	+1	2248987..2252235	-	1082	104781282	-	PSEEN2150	-	non-ribosomal peptide synthetase
1967	 70.96	+1	2252264..2253289	-	341	104781283	-	PSEEN2151	-	ornithine cyclodeaminase
1968	 67.58	0	2253307..2254287	-	326	104781284	-	PSEEN2152	-	cysteine synthase
1969	 71.05	+1	2254308..2256860	-	850	104781285	-	PSEEN2153	-	polyketide synthase
1970	 69.91	+1	2256875..2266282	-	3135	104781286	-	PSEEN2154	-	non-ribosomal peptide synthetase
1971	 68.37	0	2266275..2267684	-	469	104781287	-	PSEEN2155	-	unspecific monooxygenase
1972	 69.62	+1	2267720..2268973	-	417	104781288	-	PSEEN2156	-	amidase family protein
1973	 67.83	0	2269290..2269889	-	199	104781289	-	PSEEN2157	-	NAD(P)H dehydrogenase (quinone)
1974	 70.02	+1	2269983..2270579	+	198	104781290	-	PSEEN2158	-	TetR family transcriptional regulator
1975	 64.88	0	2270680..2271573	-	297	104781291	-	PSEEN2159	-	LysR family transcriptional regulator
1976	 60.34	0	2271706..2271942	+	78	104781292	-	PSEEN2160	-	lipoprotein
1977	 59.76	0	2271958..2272710	+	250	104781293	-	PSEEN2161	-	hypothetical protein
1978	 68.33	0	2272791..2272970	-	59	104781294	-	PSEEN2162	-	hypothetical protein
1979	 67.47	0	2273125..2273868	+	247	104781295	-	PSEEN2163	-	hypothetical protein
1980	 65.97	0	2273943..2275226	-	427	104781296	-	PSEEN2164	-	FAD-dependant oxidoreductase
1981	 66.11	0	2276098..2276640	+	180	104781297	-	PSEEN2166	-	hypothetical protein
1982	 62.42	0	2276653..2276958	-	101	104781298	-	PSEEN2167	-	hypothetical protein
1983	 62.87	0	2277029..2277607	-	192	104781299	-	PSEEN2168	-	hypothetical protein
1984	 65.00	0	2277783..2278799	-	338	104781300	-	PSEEN2169	-	hypothetical protein
1985	 67.42	0	2278822..2280156	-	444	104781301	-	PSEEN2170	-	cytochrome c
1986	 68.31	0	2280175..2282421	-	748	104781302	-	PSEEN2171	-	isoquinoline 1-oxidoreductase, beta subunit
1987	 67.98	0	2282421..2282876	-	151	104781303	-	PSEEN2172	-	isoquinoline 1-oxidoreductase, alpha subunit
1988	 65.40	0	2283126..2283599	-	157	104781304	-	PSEEN2173	-	acetyltransferase
1989	 66.36	0	2283820..2284461	+	213	104781305	-	PSEEN2174	-	amino acid transporter LysE
1990	 68.00	0	2284840..2286561	+	573	104781306	-	PSEEN2176	-	TPS family activation/secretion protein
1991	 66.97	0	2286607..2290857	+	1416	104781307	-	PSEEN2177	-	surface colonization protein; filamentous haemagglutinin, N-terminal
1992	 69.09	+1	2290998..2291699	-	233	104781308	-	PSEEN2178	-	hypothetical protein
1993	 65.04	0	2291812..2292426	-	204	104781309	-	PSEEN2180	-	hypothetical protein
1994	 64.17	0	2292677..2293276	-	199	104781310	-	PSEEN2181	-	hypothetical protein
1995	 66.27	0	2293360..2294862	-	500	104781311	nhaB	PSEEN2182	-	sodium/proton antiporter
1996	 64.33	0	2295014..2295826	+	270	104781312	-	PSEEN2183	-	enoyl-CoA hydratase
1997	 66.91	0	2295861..2296691	+	276	104781313	nudC	PSEEN2184	-	NADH pyrophosphatase
1998	 66.28	0	2296883..2297662	-	259	104781314	-	PSEEN2185	-	hypothetical protein
1999	 66.15	0	2297826..2299169	-	447	104781315	-	PSEEN2186	-	glutamine synthetase
2000	 64.53	0	2299343..2299903	-	186	104781316	-	PSEEN2187	-	transcriptional regulator
2001	 68.06	0	2299896..2301185	-	429	104781317	-	PSEEN2188	-	oxidoreductase
2002	 68.47	0	2301357..2302244	+	295	104781318	-	PSEEN2190	-	LysR family transcriptional regulator
2003	 66.58	0	2302339..2303448	+	369	104781319	-	PSEEN2191	-	peptidyl-arginine deiminase
2004	 65.85	0	2303448..2304545	+	365	104781320	-	PSEEN2192	-	periplasmic polyamine-binding protein
2005	 67.99	0	2304648..2306615	-	655	104781321	topB	PSEEN2193	-	DNA topoisomerase III
2006	 65.64	0	2306849..2308699	+	616	104781322	-	PSEEN2195	-	triacylglycerol lipase
2007	 64.83	0	2308771..2309205	-	144	104781323	-	PSEEN2196	-	acetyl transferase
2008	 65.81	0	2309198..2310364	-	388	104781324	-	PSEEN2197	-	hypothetical protein
2009	 64.77	0	2310446..2311816	-	456	104781325	purB	PSEEN2198	-	adenylosuccinate lyase
2010	 65.23	0	2312063..2312689	-	208	104781326	-	PSEEN2199	-	hypothetical protein
2011	 64.44	0	2312686..2313810	-	374	104781327	trmU	PSEEN2200	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2012	 64.63	0	2313870..2314310	-	146	104781328	-	PSEEN2201	-	NUDIX family hydrolase
2013	 63.93	0	2314500..2316725	-	741	104781329	idh	PSEEN2202	-	isocitrate dehydrogenase
2014	 61.26	0	2317232..2318488	+	418	104781330	icd	PSEEN2204	-	isocitrate dehydrogenase
2015	 54.92	-2	2318562..2318825	-	87	104781331	cspD	PSEEN2205	-	cold-shock protein CspD
2016	 54.93	-2	2319058..2319432	+	124	104781332	clpS	PSEEN2206	-	ATP-dependent Clp protease adaptor protein ClpS
2017	 62.66	0	2319463..2321733	+	756	104781333	clpA	PSEEN2207	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
2018	 57.53	-1	2321877..2322095	-	72	104781334	infA	PSEEN2208	-	translation initiation factor IF-1
2019	 61.86	0	2322199..2322906	-	235	104781335	-	PSEEN2209	-	arginyl-tRNA-protein transferase
2020	 66.52	0	2322964..2323644	-	226	104781336	aat	PSEEN2210	-	leucyl/phenylalanyl-tRNA--protein transferase
2021	 64.02	0	2323996..2326413	+	805	104781337	ftsK	PSEEN2212	-	cell division protein FtsK
2022	 61.54	0	2326476..2327099	+	207	104781338	lolA	PSEEN2213	-	outer-membrane lipoprotein carrier protein
2023	 66.59	0	2327112..2328437	+	441	104781339	rarA	PSEEN2214	-	recombination factor protein RarA
2024	 65.07	0	2328434..2328808	+	124	104781340	-	PSEEN2215	-	crcB protein
2025	 64.95	0	2328839..2330119	+	426	104781341	serS	PSEEN2216	-	seryl-tRNA synthetase
2026	 68.46	0	2330120..2331511	+	463	104781342	cysG	PSEEN2217	-	siroheme synthase
2027	 61.67	0	2331617..2332576	-	319	104781343	-	PSEEN2218	-	hypothetical protein
2028	 65.97	0	2332673..2333674	-	333	104781344	-	PSEEN2219	-	hypothetical protein
2029	 61.61	0	2333671..2334006	-	111	104781345	-	PSEEN2220	-	sulfite reductase, gamma subunit DsrC-like
2030	 63.64	0	2334003..2334299	-	98	104781346	-	PSEEN2221	-	hypothetical protein
2031	 66.38	0	2334299..2334643	-	114	104781347	-	PSEEN2222	-	hypothetical protein
2032	 66.41	0	2334660..2335052	-	130	104781348	-	PSEEN2223	-	hypothetical protein
2033	 65.51	0	2335140..2336519	-	459	104781349	-	PSEEN2224	-	xanthine/uracil permease family protein
2034	 61.90	0	2336728..2337399	-	223	104781350	-	PSEEN2225	-	hypothetical protein
2035	 59.52	-1	2337757..2338806	-	349	104781351	-	PSEEN2226	-	site-specific recombinase
2036	 62.60	0	2338808..2339053	-	81	104781352	-	PSEEN2227	-	hypothetical protein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.