IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1895	 63.71	0	2171703..2172515	-	270	104781211	xthA	PSEEN2076	-	exonuclease III
1896	 65.75	0	2172680..2173330	+	216	104781212	-	PSEEN2077	-	acetyltransferase
1897	 64.60	0	2173384..2175126	+	580	104781213	-	PSEEN2078	-	surface antigen
1898	 67.37	0	2175123..2178797	+	1224	104781214	-	PSEEN2079	-	hypothetical protein
1899	 59.84	0	2178922..2179302	-	126	104781215	-	PSEEN2080	-	hypothetical protein
1900	 56.08	-1	2179744..2179932	+	62	104781216	-	PSEEN2081	-	hypothetical protein
1901	 67.49	0	2179968..2180330	-	120	104781217	-	PSEEN2082	-	hypothetical protein
1902	 65.76	0	2180530..2182845	+	771	104781218	-	PSEEN2083	-	penicillin amidase
1903	 64.32	0	2182945..2183667	-	240	104781219	lpxH	PSEEN2084	-	UDP-2,3-diacylglucosamine hydrolase
1904	 59.08	-1	2183664..2184164	-	166	104781220	ppiB	PSEEN2085	-	peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
1905	 64.96	0	2184378..2186081	+	567	104781221	glnS	PSEEN2086	-	glutaminyl-tRNA synthetase
1906	 64.21	0	2186091..2187473	+	460	104781222	cysS	PSEEN2087	-	cysteinyl-tRNA synthetase
1907	 65.82	0	2187509..2188804	-	431	104781223	-	PSEEN2088	-	sensor histidine kinase
1908	 64.17	0	2188878..2189558	-	226	104781224	-	PSEEN2089	-	DNA-binding response regulator
1909	 62.16	0	2189910..2190929	-	339	104781225	ilvE	PSEEN2090	-	branched-chain amino acid aminotransferase
1910	 66.67	0	2191162..2191512	-	116	104781226	-	PSEEN2091	-	hypothetical protein
1911	 65.59	0	2191512..2191883	-	123	104781227	-	PSEEN2092	-	hypothetical protein
1912	 68.47	0	2192170..2193003	+	277	104781228	ureD	PSEEN2093	-	urease accessory protein UreD
1913	 66.67	0	2193014..2193316	+	100	104781229	ureA	PSEEN2094	-	urease subunit gamma
1914	 66.35	0	2193327..2193644	+	105	104781230	ureB	PSEEN2095	-	urease subunit beta
1915	 67.08	0	2193641..2195344	+	567	104781231	ureC	PSEEN2096	-	urease subunit alpha
1916	 67.29	0	2195355..2195834	+	159	104781232	ureE	PSEEN2097	-	urease accessory protein UreE
1917	 67.40	0	2195854..2196399	+	181	104781233	ureJ	PSEEN2098	-	urease accessory protein UreJ
1918	 66.67	0	2196399..2197073	+	224	104781234	ureF	PSEEN2099	-	urease accessory protein UreF
1919	 61.54	0	2197085..2197708	+	207	104781235	ureG	PSEEN2100	-	urease accessory protein UreG
1920	 55.88	-1	2197884..2198087	+	67	104781236	-	PSEEN2101	-	hypothetical protein
1921	 56.67	-1	2198376..2198525	+	49	104781237	-	PSEEN2102	-	hypothetical protein
1922	 63.02	0	2198740..2199645	+	301	104781238	-	PSEEN2103	-	LysR family transcriptional regulator
1923	 66.67	0	2199896..2200135	+	79	104781239	-	PSEEN2104	-	hypothetical protein
1924	 67.01	0	2200187..2200474	-	95	104781240	-	PSEEN2105	-	hypothetical protein
1925	 65.38	0	2200713..2201024	-	103	104781241	-	PSEEN2106	-	hypothetical protein
1926	 67.71	0	2201070..2201837	+	255	104781242	-	PSEEN2107	-	hypothetical protein
1927	 62.98	0	2201834..2202376	+	180	104781243	-	PSEEN2108	-	ECF subfamily RNA polymerase sigma-70 factor
1928	 68.55	0	2202406..2203308	+	300	104781244	-	PSEEN2109	-	transmembrane sensor
1929	 70.85	+1	2203301..2203897	-	198	104781245	-	PSEEN2110	-	type II secretion system protein J
1930	 69.43	+1	2203894..2204328	-	144	104781246	-	PSEEN2111	-	type II secretion system protein G
1931	 66.89	0	2204445..2204891	+	148	104781247	-	PSEEN2112	-	hypothetical protein
1932	 61.27	0	2205117..2209808	+	1563	104781248	-	PSEEN2113	-	hypothetical protein
1933	 55.39	-1	2209819..2210421	+	200	104781249	-	PSEEN2114	-	hypothetical protein
1934	 66.92	0	2210505..2212085	-	526	104781250	-	PSEEN2115	-	thiamine pyrophosphate
1935	 64.98	0	2212181..2214013	-	610	104781251	-	PSEEN2116	-	monoamine oxidase
1936	 68.25	0	2214141..2214962	-	273	104781252	-	PSEEN2117	-	hypothetical protein
1937	 67.84	0	2214982..2216259	-	425	104781253	metY	PSEEN2118	-	O-acetylhomoserine aminocarboxypropyltransferase
1938	 62.94	0	2216460..2216942	+	160	104781254	-	PSEEN2119	-	hypothetical protein
1939	 49.65	-2	2217086..2217655	+	189	104781255	-	PSEEN2120	-	hypothetical protein
1940	 44.31	-2	2218177..2218431	+	84	104781256	-	PSEEN2122	-	hypothetical protein
1941	 66.03	0	2218450..2219397	-	315	104781257	-	PSEEN2123	-	electron transporter, SCO1/SenC family protein/cytochrome c
1942	 66.84	0	2219490..2222885	-	1131	104781258	-	PSEEN2124	-	hypothetical protein
1943	 68.81	+1	2223124..2223870	+	248	104781259	-	PSEEN2125	-	hypothetical protein
1944	 58.97	-1	2223923..2224702	-	259	104781260	-	PSEEN2126	-	hypothetical protein
1945	 63.11	0	2224947..2225678	+	243	104781261	-	PSEEN2128	-	hypothetical protein
1946	 65.33	0	2225800..2226774	-	324	104781262	-	PSEEN2129	-	dioxygenase, beta subunit
1947	 63.37	0	2226839..2227960	-	373	104781263	-	PSEEN2130	-	dioxygenase, alpha subunit
1948	 65.34	0	2228089..2229519	-	476	162139700	-	PSEEN2131	-	putative transporter
1949	 64.56	0	2229931..2231022	-	363	104781265	-	PSEEN2132	-	tartrate dehydrogenase
1950	 66.89	0	2231117..2232028	+	303	104781266	-	PSEEN2133	-	LysR family transcriptional regulator
1951	 65.61	0	2232118..2232687	-	189	104781267	-	PSEEN2134	-	acetyltransferase
1952	 68.70	+1	2232766..2233110	-	114	104781268	-	PSEEN2135	-	carboxymuconolactone decarboxylase
1953	 61.89	0	2233201..2234100	-	299	104781269	-	PSEEN2136	-	aspartyl/asparaginyl beta-hydroxylase
1954	 69.23	+1	2234425..2234970	+	181	104781270	-	PSEEN2137	-	2'-5' RNA ligase
1955	 68.00	0	2234934..2236361	-	475	104781271	-	PSEEN2138	-	ABC transporter ATPase
1956	 69.21	+1	2236352..2237137	-	261	104781272	-	PSEEN2139	-	thioesterase
1957	 68.53	0	2237142..2237570	-	142	104781273	-	PSEEN2140	-	hypothetical protein
1958	 69.72	+1	2237574..2238425	-	283	104781274	-	PSEEN2141	-	O-methyltransferase
1959	 69.41	+1	2238439..2239821	-	460	104781275	-	PSEEN2142	-	multidrug efflux protein MATE family
1960	 68.26	0	2239896..2241275	-	459	104781276	-	PSEEN2143	-	sensor histidine kinase
1961	 63.61	0	2241241..2241633	-	130	104781277	-	PSEEN2144	-	response regulator
1962	 67.19	0	2242326..2243864	-	512	104781278	-	PSEEN2146	-	hypothetical protein
1963	 68.03	0	2243851..2244435	-	194	104781279	-	PSEEN2147	-	hypothetical protein
1964	 69.93	+1	2244432..2245043	-	203	104781280	-	PSEEN2148	-	hypothetical protein
1965	 69.81	+1	2245040..2248990	-	1316	104781281	-	PSEEN2149	-	non-ribosomal peptide synthetase
1966	 70.02	+1	2248987..2252235	-	1082	104781282	-	PSEEN2150	-	non-ribosomal peptide synthetase
1967	 70.96	+1	2252264..2253289	-	341	104781283	-	PSEEN2151	-	ornithine cyclodeaminase
1968	 67.58	0	2253307..2254287	-	326	104781284	-	PSEEN2152	-	cysteine synthase
1969	 71.05	+1	2254308..2256860	-	850	104781285	-	PSEEN2153	-	polyketide synthase
1970	 69.91	+1	2256875..2266282	-	3135	104781286	-	PSEEN2154	-	non-ribosomal peptide synthetase
1971	 68.37	0	2266275..2267684	-	469	104781287	-	PSEEN2155	-	unspecific monooxygenase
1972	 69.62	+1	2267720..2268973	-	417	104781288	-	PSEEN2156	-	amidase family protein
1973	 67.83	0	2269290..2269889	-	199	104781289	-	PSEEN2157	-	NAD(P)H dehydrogenase (quinone)
1974	 70.02	+1	2269983..2270579	+	198	104781290	-	PSEEN2158	-	TetR family transcriptional regulator
1975	 64.88	0	2270680..2271573	-	297	104781291	-	PSEEN2159	-	LysR family transcriptional regulator
1976	 60.34	0	2271706..2271942	+	78	104781292	-	PSEEN2160	-	lipoprotein
1977	 59.76	0	2271958..2272710	+	250	104781293	-	PSEEN2161	-	hypothetical protein
1978	 68.33	0	2272791..2272970	-	59	104781294	-	PSEEN2162	-	hypothetical protein
1979	 67.47	0	2273125..2273868	+	247	104781295	-	PSEEN2163	-	hypothetical protein
1980	 65.97	0	2273943..2275226	-	427	104781296	-	PSEEN2164	-	FAD-dependant oxidoreductase
1981	 66.11	0	2276098..2276640	+	180	104781297	-	PSEEN2166	-	hypothetical protein
1982	 62.42	0	2276653..2276958	-	101	104781298	-	PSEEN2167	-	hypothetical protein
1983	 62.87	0	2277029..2277607	-	192	104781299	-	PSEEN2168	-	hypothetical protein
1984	 65.00	0	2277783..2278799	-	338	104781300	-	PSEEN2169	-	hypothetical protein
1985	 67.42	0	2278822..2280156	-	444	104781301	-	PSEEN2170	-	cytochrome c
1986	 68.31	0	2280175..2282421	-	748	104781302	-	PSEEN2171	-	isoquinoline 1-oxidoreductase, beta subunit
1987	 67.98	0	2282421..2282876	-	151	104781303	-	PSEEN2172	-	isoquinoline 1-oxidoreductase, alpha subunit
1988	 65.40	0	2283126..2283599	-	157	104781304	-	PSEEN2173	-	acetyltransferase
1989	 66.36	0	2283820..2284461	+	213	104781305	-	PSEEN2174	-	amino acid transporter LysE
1990	 68.00	0	2284840..2286561	+	573	104781306	-	PSEEN2176	-	TPS family activation/secretion protein
1991	 66.97	0	2286607..2290857	+	1416	104781307	-	PSEEN2177	-	surface colonization protein; filamentous haemagglutinin, N-terminal
1992	 69.09	+1	2290998..2291699	-	233	104781308	-	PSEEN2178	-	hypothetical protein
1993	 65.04	0	2291812..2292426	-	204	104781309	-	PSEEN2180	-	hypothetical protein
1994	 64.17	0	2292677..2293276	-	199	104781310	-	PSEEN2181	-	hypothetical protein
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.