IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1653	 65.52	0	1909142..1909840	+	232	104780969	-	PSEEN1820	-	PspA/IM30 family regulator protein
1654	 63.07	0	1910222..1910860	+	212	104780970	-	PSEEN1821	-	hypothetical protein
1655	 64.55	0	1910873..1911298	+	141	104780971	-	PSEEN1822	-	hypothetical protein
1656	 67.07	0	1911324..1912073	+	249	104780972	-	PSEEN1823	-	hypothetical protein
1657	 65.80	0	1912076..1913233	+	385	104780973	-	PSEEN1824	-	glutathionylspermidine synthase
1658	 60.94	0	1913317..1913979	+	220	104780974	-	PSEEN1825	-	hypothetical protein
1659	 68.93	+1	1914404..1914889	+	161	104780975	-	PSEEN1826	-	formate dehydrogenase subunit gamma
1660	 67.63	0	1914883..1916436	+	517	104780976	-	PSEEN1827	-	formate dehydrogenase, beta subunit
1661	 66.11	0	1916433..1919312	+	959	104780977	-	PSEEN1828	-	formate dehydrogenase, alpha subunit
1662	 64.79	0	1919309..1919521	+	70	104780978	-	PSEEN1829	-	formate dehydrogenase, delta subunit
1663	 61.67	0	1919705..1920124	-	139	104780979	-	PSEEN1830	-	acetyltransferase
1664	 64.69	0	1920293..1922113	+	606	104780980	-	PSEEN1831	-	ABC efflux transporter, permease/ATP-binding protein
1665	 67.01	0	1922873..1923166	+	97	104780981	-	PSEEN1832	-	hypothetical protein
1666	 60.00	0	1923279..1923593	-	104	104780982	-	PSEEN1833	-	hypothetical protein
1667	 63.77	0	1923889..1924233	+	114	104780983	-	PSEEN1835	-	hypothetical protein
1668	 68.53	0	1924314..1924904	-	196	104780984	-	PSEEN1837	-	heme oxygenase BphO
1669	 64.83	0	1925042..1926073	+	343	104780985	-	PSEEN1838	-	hypothetical protein
1670	 66.67	0	1926081..1926866	-	261	104780986	-	PSEEN1839	-	hypothetical protein
1671	 64.55	0	1927061..1927438	+	125	104780987	-	PSEEN1840	-	endoribonuclease
1672	 65.45	0	1927591..1929477	-	628	104780988	-	PSEEN1841	-	methyl-accepting chemotaxis transducer
1673	 68.03	0	1929628..1930506	-	292	104780989	-	PSEEN1842	-	LysR family transcriptional regulator
1674	 63.40	0	1930621..1931049	+	142	104780990	-	PSEEN1843	-	hypothetical protein
1675	 66.27	0	1931164..1932180	-	338	104780991	-	PSEEN1844	-	hypothetical protein
1676	 59.91	0	1932335..1932778	-	147	104780992	-	PSEEN1845	-	acyltransferase
1677	 68.09	0	1932893..1933453	+	186	104780993	-	PSEEN1846	-	isochorismatase
1678	 69.75	+1	1933525..1934205	-	226	104780994	-	PSEEN1847	-	GntR family transcriptional regulator
1679	 67.81	0	1934226..1934927	-	233	104780995	-	PSEEN1848	-	GntR family transcriptional regulator
1680	 63.23	0	1934998..1936308	-	436	104780996	dctA-2	PSEEN1849	-	C4-dicarboxylate transporter DctA
1681	 63.81	0	1936518..1936832	-	104	104780997	-	PSEEN1850	-	Cro/CI family transcriptional regulator
1682	 69.48	+1	1937109..1938674	+	521	104780998	aer-1	PSEEN1851	-	aerotaxis receptor Aer-1
1683	 64.95	0	1938687..1940375	+	562	104780999	-	PSEEN1852	-	sensory box-containing diguanylate cyclase
1684	 67.00	0	1940413..1945263	-	1616	104781000	-	PSEEN1853	-	hypothetical protein
1685	 64.63	0	1945360..1945851	-	163	104781001	-	PSEEN1854	-	AsnC family transcriptional regulator
1686	 65.80	0	1945865..1946668	-	267	104781002	-	PSEEN1855	-	amino acid ABC transporter, ATP-binding protein
1687	 65.55	0	1946688..1947401	-	237	104781003	-	PSEEN1856	-	amino acid ABC transporter, permease protein
1688	 64.27	0	1947398..1948105	-	235	104781004	-	PSEEN1857	-	amino acid ABC transporter, permease protein
1689	 63.35	0	1948176..1948958	-	260	104781005	-	PSEEN1858	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1690	 65.71	0	1949283..1950329	-	348	104781006	arcB	PSEEN1859	-	ornithine cyclodeaminase
1691	 65.49	0	1950349..1951452	-	367	104781007	-	PSEEN1860	-	hypothetical protein
1692	 66.90	0	1951536..1952390	-	284	104781008	folD	PSEEN1862	-	bifunctional protein Includes: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase
1693	 61.02	0	1953147..1953323	+	58	104781009	-	PSEEN1864	-	hypothetical protein
1694	 56.79	-1	1953397..1954176	+	259	104781010	-	PSEEN1865	-	hypothetical protein
1695	 62.33	0	1954312..1954611	+	99	104781011	-	PSEEN1866	-	hypothetical protein
1696	 59.36	-1	1955251..1956564	+	437	104781012	tig	PSEEN1867	-	trigger factor
1697	 62.46	0	1956655..1957296	+	213	104781013	clpP	PSEEN1868	-	ATP-dependent Clp protease proteolytic subunit
1698	 57.71	-1	1957360..1958688	+	442	104781014	clpX	PSEEN1869	-	ATP-dependent protease ATP-binding subunit
1699	 60.95	0	1958844..1961240	+	798	104781015	lon	PSEEN1870	-	DNA-binding ATP-dependent protease La
1700	 60.07	0	1961393..1961665	+	90	104781016	hupB	PSEEN1871	-	DNA-binding protein HU-beta
1701	 62.63	0	1961846..1963705	+	619	104781017	-	PSEEN1872	-	peptidyl-prolyl cis-trans isomerase D
1702	 62.06	0	1963862..1964902	-	346	104781018	-	PSEEN1873	-	patatin-like phospholipase
1703	 62.72	0	1965060..1965338	+	92	104781019	-	PSEEN1874	-	lipoprotein
1704	 68.12	0	1965354..1966112	+	252	104781020	-	PSEEN1875	-	hypothetical protein
1705	 66.42	0	1966194..1966991	+	265	104781021	-	PSEEN1876	-	acyl-CoA thioesterase II
1706	 64.77	0	1967099..1967467	-	122	104781022	-	PSEEN1877	-	hypothetical protein
1707	 67.07	0	1967718..1969196	-	492	104781023	-	PSEEN1878	-	methyl-accepting chemotaxis transducer
1708	 65.55	0	1969283..1970089	-	268	104781024	-	PSEEN1879	-	TatD family deoxyribonuclease
1709	 66.95	0	1970248..1971654	+	468	104781025	-	PSEEN1880	-	lytic transglycosylase
1710	 65.98	0	1971766..1972200	+	144	104781026	-	PSEEN1881	-	hypothetical protein
1711	 63.43	0	1972514..1972822	+	102	104781027	-	PSEEN1882	-	hypothetical protein
1712	 56.33	-1	1972913..1973386	+	157	104781028	greB	PSEEN1883	-	transcription elongation factor GreB
1713	 67.82	0	1973500..1976007	-	835	104781029	-	PSEEN1884	-	hypothetical protein
1714	 70.03	+1	1976007..1976690	-	227	104781030	-	PSEEN1885	-	ABC transporter, ATP-binding protein
1715	 64.69	0	1976701..1977306	+	201	104781031	-	PSEEN1886	-	arylesterase
1716	 68.44	0	1977365..1977646	+	93	104781032	-	PSEEN1887	-	hypothetical protein
1717	 62.99	0	1977752..1978729	+	325	104781033	-	PSEEN1888	-	hypothetical protein
1718	 58.73	-1	1978860..1979111	-	83	104781034	oprI	PSEEN1889	-	outer membrane lipoprotein OprI
1719	 63.48	0	1979613..1979894	+	93	104781035	-	PSEEN1890	-	hypothetical protein
1720	 62.02	0	1979952..1981028	-	358	104781036	aro	PSEEN1891	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1721	 65.73	0	1981196..1981621	-	141	104781037	-	PSEEN1892	-	hypothetical protein
1722	 64.86	0	1981743..1982684	+	313	104781038	-	PSEEN1893	-	2-dehydropantoate 2-reductase
1723	 64.46	0	1982789..1983286	+	165	104781039	-	PSEEN1894	-	hypothetical protein
1724	 61.95	0	1983413..1984387	+	324	104781040	cysB	PSEEN1895	-	transcriptional regulator CysB
1725	 63.67	0	1984429..1985163	-	244	104781041	-	PSEEN1896	-	phosphoadenosine phosphosulfate reductase
1726	 67.26	0	1985292..1986635	-	447	104781042	-	PSEEN1897	-	para-aminodeoxychorismate synthase subunit I PabB
1727	 63.91	0	1986795..1987772	-	325	104781043	-	PSEEN1898	-	hypothetical protein
1728	 62.70	0	1987772..1989307	-	511	104781044	-	PSEEN1899	-	hypothetical protein
1729	 64.25	0	1989313..1989849	-	178	104781045	-	PSEEN1900	-	hypothetical protein
1730	 66.11	0	1990135..1990851	+	238	104781046	-	PSEEN1901	-	GntR family transcriptional regulator
1731	 65.21	0	1990848..1991738	+	296	104781047	prpB	PSEEN1902	-	2-methylisocitrate lyase
1732	 65.34	0	1991905..1993032	+	375	104781048	prpC	PSEEN1903	-	methylcitrate synthase
1733	 66.59	0	1993174..1995762	+	862	104781049	-	PSEEN1905	-	aconitate hydratase
1734	 66.75	0	1995914..1997104	+	396	104781050	-	PSEEN1906	-	hypothetical protein
1735	 65.12	0	1997245..1998729	+	494	104781051	prpD	PSEEN1907	-	2-methylcitrate dehydratase
1736	 64.75	0	1998838..2001447	-	869	162139701	acnB	PSEEN1908	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1737	 63.77	0	2001857..2002339	+	160	104781053	-	PSEEN1909	-	hypothetical protein
1738	 60.50	0	2002435..2002791	-	118	104781054	-	PSEEN1910	-	6-pyruvoyl tetrahydrobiopterin synthase SscR
1739	 69.72	+1	2002845..2003924	-	359	104781055	-	PSEEN1911	-	hypothetical protein
1740	 61.49	0	2004151..2004459	+	102	104781056	-	PSEEN1912	-	hypothetical protein
1741	 67.62	0	2004459..2004773	+	104	104781057	-	PSEEN1913	-	hypothetical protein
1742	 66.67	0	2004774..2005442	+	222	104781058	-	PSEEN1914	-	DNA-binding response regulator
1743	 66.44	0	2005439..2006755	+	438	104781059	-	PSEEN1915	-	sensor histidine kinase
1744	 70.73	+1	2007058..2008215	+	385	104781060	-	PSEEN1916	-	hypothetical protein
1745	 68.17	0	2008189..2009055	-	288	104781061	-	PSEEN1917	-	LysR family transcriptional regulator
1746	 65.80	0	2009118..2010392	-	424	104781062	-	PSEEN1918	-	serine/threonine protein kinase
1747	 66.72	0	2010547..2012436	+	629	104781063	-	PSEEN1919	-	acetyl-CoA synthetase
1748	 65.27	0	2012554..2013627	-	357	104781064	-	PSEEN1920	-	AFG1 family ATPase
1749	 67.11	0	2013761..2014672	-	303	104781065	-	PSEEN1921	-	AraC family transcriptional regulator
1750	 64.53	0	2014775..2015335	+	186	104781066	-	PSEEN1922	-	alkylhydroperoxidase
1751	 67.79	0	2015382..2016446	+	354	104781067	-	PSEEN1923	-	acyl-CoA dehydrogenase
1752	 68.00	0	2016443..2017264	+	273	104781068	-	PSEEN1924	-	ABC transporter, ATP-binding protein
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.