IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1418	 66.67	0	1630797..1631195	-	132	104780734	-	PSEEN1560	-	hypothetical protein
1419	 65.70	0	1631321..1632454	+	377	104780735	-	PSEEN1561	-	hypothetical protein
1420	 55.61	-1	1632503..1633072	+	189	104780736	efp	PSEEN1562	-	elongation factor P
1421	 64.80	0	1633236..1633664	-	142	104780737	ohr	PSEEN1563	-	organic hydroperoxide resistance protein
1422	 66.67	0	1633795..1634250	-	151	104780738	-	PSEEN1564	-	MarR family transcriptional regulator
1423	 69.28	+1	1634306..1635262	-	318	104780739	-	PSEEN1565	-	LysR family transcriptional regulator
1424	 64.80	0	1635374..1636123	+	249	104780740	-	PSEEN1566	-	hypothetical protein
1425	 65.02	0	1636189..1637040	-	283	104780741	-	PSEEN1567	-	LysR family transcriptional regulator
1426	 62.61	0	1637134..1637355	+	73	104780742	-	PSEEN1568	-	hypothetical protein
1427	 66.58	0	1637502..1638722	+	406	104780743	-	PSEEN1569	-	hypothetical protein
1428	 67.11	0	1638703..1640049	-	448	104780744	-	PSEEN1570	-	phospho-2-dehydro-3-deoxyheptonate aldolase, class II
1429	 65.21	0	1640169..1640924	+	251	104780745	-	PSEEN1571	-	hypothetical protein
1430	 66.90	0	1641279..1642967	+	562	104780746	-	PSEEN1572	-	DEAD-box ATP dependent DNA helicase
1431	 48.06	-2	1645351..1646124	-	257	104780747	-	PSEEN1576	-	lipoprotein
1432	 50.39	-2	1646195..1646968	-	257	104780748	-	PSEEN1577	-	lipoprotein
1433	 71.29	+1	1646983..1647804	-	273	104780749	-	PSEEN1578	-	hypothetical protein
1434	 69.83	+1	1647801..1649855	-	684	104780750	-	PSEEN1579	-	hypothetical protein
1435	 69.85	+1	1649989..1650741	-	250	104780751	-	PSEEN1580	-	aromatic ring-opening dioxygenase
1436	 66.82	0	1650842..1651492	+	216	104780752	tpm	PSEEN1581	-	thiopurine S-methyltransferase
1437	 65.32	0	1651632..1652519	-	295	104780753	htpX	PSEEN1582	-	heat shock protein HtpX
1438	 64.19	0	1652884..1654095	-	403	104780754	-	PSEEN1583	-	aminotransferase AlaT
1439	 63.13	0	1654260..1654655	+	131	104780755	msrB	PSEEN1584	-	methionine sulfoxide reductase B
1440	 63.80	0	1654668..1655156	+	162	104780756	-	PSEEN1585	-	glutathione peroxidase
1441	 66.50	0	1655146..1657500	-	784	104780757	-	PSEEN1586	-	sensor histidine kinase/response regulator hybrid
1442	 66.55	0	1657672..1658559	+	295	104780758	-	PSEEN1587	-	hypothetical protein
1443	 65.01	0	1658560..1659042	+	160	104780759	-	PSEEN1588	-	hypothetical protein
1444	 61.07	0	1659167..1659934	-	255	104780760	-	PSEEN1589	-	hypothetical protein
1445	 45.92	-2	1660966..1662189	+	407	104780761	-	PSEEN1591	-	hypothetical protein
1446	 60.83	0	1662430..1662840	-	136	104780762	-	PSEEN1593	-	hypothetical protein
1447	 66.01	0	1662994..1665441	-	815	104780763	fadE	PSEEN1594	-	acyl-CoA dehydrogenase
1448	 65.38	0	1665813..1666436	+	207	104780764	-	PSEEN1595	-	glutathione S-transferase
1449	 62.70	0	1666569..1667501	+	310	104780765	-	PSEEN1596	-	ABC transporter, ATP-binding protein
1450	 61.15	0	1667498..1668277	+	259	104780766	-	PSEEN1597	-	ABC transporter, permease protein
1451	 65.71	0	1668161..1668787	-	208	104780767	-	PSEEN1598	-	hypothetical protein
1452	 65.51	0	1671353..1671958	+	201	104780768	-	PSEEN1601	-	transporter, MotA/TolQ/ExbB proton channel family protein
1453	 64.60	0	1671955..1672389	+	144	104780769	-	PSEEN1602	-	biopolymer ExbD/TolR family transporter
1454	 69.44	+1	1672389..1673399	+	336	104780770	lpxK	PSEEN1603	-	tetraacyldisaccharide 4'-kinase
1455	 65.05	0	1673433..1673618	+	61	104780771	-	PSEEN1604	-	hypothetical protein
1456	 67.06	0	1673615..1674379	+	254	104780772	kdsB	PSEEN1605	-	3-deoxy-manno-octulosonate cytidylyltransferase
1457	 64.52	0	1674379..1674843	+	154	104780773	-	PSEEN1606	-	low molecular weight phosphotyrosine protein phosphatase
1458	 64.61	0	1674840..1675859	+	339	104780774	murB	PSEEN1607	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1459	 65.83	0	1676027..1679254	-	1075	104780775	-	PSEEN1608	-	ribonuclease E Rne
1460	 64.47	0	1680050..1681006	+	318	104780776	rluC	PSEEN1609	-	23S rRNA pseudouridylate synthase
1461	 62.41	0	1681012..1681692	+	226	104780777	-	PSEEN1610	-	HAD superfamily hydrolase
1462	 61.18	0	1681695..1682678	+	327	104780778	-	PSEEN1611	-	peptidase SppA
1463	 62.69	0	1682739..1683317	-	192	104780779	-	PSEEN1612	-	Maf-like protein
1464	 56.25	-1	1683413..1683940	+	175	104780780	-	PSEEN1614	-	hypothetical protein
1465	 56.28	-1	1683954..1684136	+	60	104780781	rpmF	PSEEN1615	-	50S ribosomal protein L32
1466	 63.11	0	1684140..1685150	+	336	104780782	plsX	PSEEN1616	-	putative glycerol-3-phosphate acyltransferase PlsX
1467	 65.18	0	1685367..1686305	+	312	104780783	fabD	PSEEN1617	-	malonyl-CoA-[acyl-carrier-protein] transacylase
1468	 64.37	0	1686322..1687062	+	246	104780784	fabG	PSEEN1618	-	3-ketoacyl-(acyl-carrier-protein) reductase
1469	 53.59	-2	1687267..1687503	+	78	104780785	acpP	PSEEN1620	-	acyl carrier protein AcpP
1470	 65.22	0	1687657..1688901	+	414	104780786	fabF	PSEEN1621	-	3-oxoacyl-(acyl carrier protein) synthase II
1471	 65.69	0	1688901..1689716	+	271	104780787	-	PSEEN1622	-	4-amino-4-deoxychorismate lyase
1472	 65.79	0	1689750..1690892	+	380	104780788	-	PSEEN1623	-	hypothetical protein
1473	 67.61	0	1690902..1691534	+	210	104780789	tmk	PSEEN1624	-	thymidylate kinase
1474	 64.64	0	1691527..1692513	+	328	104780790	holB	PSEEN1625	-	DNA polymerase III subunit delta'
1475	 67.82	0	1692546..1693328	+	260	104780791	-	PSEEN1627	-	TatD family deoxyribonuclease
1476	 65.61	0	1693831..1694964	-	377	104780792	-	PSEEN1628	-	hypothetical protein
1477	 58.33	-1	1695038..1695673	+	211	104780793	-	PSEEN1629	-	TetR family transcriptional regulator
1478	 63.05	0	1695803..1696771	+	322	104780794	-	PSEEN1630	-	molybdenum cofactor biosynthesis protein A
1479	 62.38	0	1696838..1697443	+	201	104780795	-	PSEEN1631	-	lipoprotein
1480	 59.89	0	1697455..1698015	+	186	104780796	-	PSEEN1632	-	hypothetical protein
1481	 62.80	0	1698627..1699040	+	137	104780797	-	PSEEN1633	-	hypothetical protein
1482	 63.37	0	1699054..1700268	-	404	104780798	-	PSEEN1634	-	hypothetical protein
1483	 64.83	0	1700563..1701759	-	398	104780799	tyrB	PSEEN1635	-	aromatic amino acid aminotransferase
1484	 63.74	0	1702050..1704065	+	671	104780800	uvrB	PSEEN1636	-	excinuclease ABC subunit B
1485	 62.28	0	1704222..1705772	-	516	104780801	-	PSEEN1637	-	EmrB/QacA family drug resistance transporter
1486	 66.15	0	1705762..1706919	-	385	104780802	-	PSEEN1638	-	HlyD family secretion protein
1487	 63.09	0	1706955..1708436	+	493	104780803	gltX	PSEEN1639	-	glutamyl-tRNA synthetase
1488	 66.48	0	1709631..1710170	+	179	104780804	-	PSEEN1643	-	TetR family transcriptional regulator
1489	 68.59	0	1710196..1711029	+	277	104780805	-	PSEEN1644	-	hydrolase
1490	 66.67	0	1711077..1711511	+	144	104780806	-	PSEEN1645	-	hypothetical protein
1491	 67.08	0	1711565..1712536	+	323	104780807	-	PSEEN1646	-	tRNA-dihydrouridine synthase C
1492	 62.19	0	1712718..1713164	+	148	104780808	-	PSEEN1647	-	small heat-shock protein IbpA
1493	 66.31	0	1713335..1716709	-	1124	104780809	-	PSEEN1648	-	sensory box protein
1494	 65.42	0	1716693..1717571	-	292	104780810	-	PSEEN1649	-	LysR family transcriptional regulator
1495	 66.60	0	1717702..1719135	+	477	104780811	leuC	PSEEN1650	-	isopropylmalate isomerase large subunit
1496	 61.24	0	1719132..1719776	+	214	104780812	leuD	PSEEN1651	-	isopropylmalate isomerase small subunit
1497	 65.65	0	1719884..1720966	+	360	104780813	leuB	PSEEN1652	-	3-isopropylmalate dehydrogenase
1498	 63.25	0	1721030..1722142	+	370	104780814	asd	PSEEN1653	-	aspartate-semialdehyde dehydrogenase
1499	 61.35	0	1723268..1723681	+	137	104780815	-	PSEEN1655	-	hypothetical protein
1500	 64.90	0	1723765..1724103	+	112	104780816	-	PSEEN1656	-	FKBP-type peptidyl-prolyl cis-trans isomerase
1501	 64.71	0	1724316..1724978	+	220	104780817	-	PSEEN1657	-	hypothetical protein
1502	 66.50	0	1725024..1726217	+	397	104780818	-	PSEEN1658	-	D-amino acid dehydrogenase, small subunit
1503	 67.22	0	1726275..1727003	-	242	104780819	-	PSEEN1659	-	hydantoin racemase
1504	 66.21	0	1727021..1728556	-	511	104780820	-	PSEEN1660	-	NCS1 nucleoside transporter
1505	 63.70	0	1729114..1729551	-	145	104780821	-	PSEEN1662	-	AsnC family transcriptional regulator
1506	 66.78	0	1729685..1730584	+	299	104780822	-	PSEEN1663	-	hypothetical protein
1507	 66.45	0	1730641..1731570	+	309	104780823	-	PSEEN1664	-	hypothetical protein
1508	 62.46	0	1731647..1732645	-	332	104780824	sbp	PSEEN1665	-	periplasmic thiosulfate-binding protein
1509	 61.07	0	1732817..1733638	-	273	104780825	-	PSEEN1666	-	cation transporter, voltage-gated ion channel cation transporter
1510	 68.38	0	1733684..1734559	-	291	104780826	-	PSEEN1667	-	transporter
1511	 66.81	0	1734705..1736120	-	471	104780827	pykF	PSEEN1668	-	pyruvate kinase
1512	 68.47	0	1736117..1737391	-	424	104780828	-	PSEEN1669	-	hydroxypyruvate reductase
1513	 63.98	0	1737618..1738511	-	297	104780829	glxR	PSEEN1670	-	tartronic semialdehyde reductase
1514	 63.09	0	1738691..1739473	-	260	104780830	hyi	PSEEN1671	-	hydroxypyruvate isomerase
1515	 64.02	0	1739528..1741303	-	591	104780831	gcl	PSEEN1672	-	glyoxylate carboligase
1516	 69.84	+1	1741561..1742001	+	146	104780832	-	PSEEN1674	-	hypothetical protein
1517	 62.42	0	1742089..1742700	-	203	104780833	-	PSEEN1675	-	TetR family transcriptional regulator
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.