IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1388	 67.05	0	1599938..1600720	-	260	104780704	-	PSEEN1526	-	hypothetical protein
1389	 70.00	+1	1600845..1601804	-	319	104780705	-	PSEEN1527	-	alpha/beta fold family hydrolase
1390	 65.66	0	1601996..1603087	+	363	104780706	aroC	PSEEN1529	-	chorismate synthase
1391	 64.50	0	1603205..1604359	+	384	104780707	-	PSEEN1530	-	major facilitator transporter
1392	 66.48	0	1604359..1604895	+	178	104780708	-	PSEEN1531	-	oxidase
1393	 64.84	0	1604900..1605172	-	90	104780709	-	PSEEN1532	-	hypothetical protein
1394	 67.43	0	1605441..1605962	+	173	104780710	-	PSEEN1535	-	hypothetical protein
1395	 64.60	0	1606025..1606555	+	176	104780711	-	PSEEN1536	-	hypothetical protein
1396	 67.31	0	1606662..1607588	-	308	104780712	-	PSEEN1537	-	divalent heavy-metal cations transporter
1397	 57.81	-1	1607715..1607906	+	63	104780713	-	PSEEN1538	-	hypothetical protein
1398	 64.50	0	1608075..1610153	+	692	104780714	-	PSEEN1540	-	membrane sulfatase
1399	 62.03	0	1610294..1610530	+	78	104780715	-	PSEEN1541	-	hypothetical protein
1400	 64.86	0	1610715..1611047	+	110	104780716	-	PSEEN1542	-	hypothetical protein
1401	 67.41	0	1611103..1611909	-	268	104780717	-	PSEEN1543	-	cytochrome c
1402	 62.04	0	1612438..1613172	+	244	104780718	-	PSEEN1544	-	amidotransferase
1403	 62.24	0	1613293..1614264	-	323	104780719	-	PSEEN1545	-	Mg2+/Co2+ transporter
1404	 62.90	0	1614352..1615068	-	238	104780720	-	PSEEN1546	-	1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC
1405	 65.07	0	1615257..1615946	-	229	104780721	-	PSEEN1547	-	enoyl-CoA hydratase
1406	 65.18	0	1616492..1618639	-	715	104780722	-	PSEEN1548	-	TonB-dependent ferric siderophore receptor
1407	 65.08	0	1618917..1619294	-	125	104780723	-	PSEEN1549	-	hypothetical protein
1408	 61.25	0	1619738..1621195	+	485	104780724	aprA	PSEEN1550	-	alkaline metalloprotease precursor AprA
1409	 65.61	0	1621248..1621625	+	125	104780725	aprI	PSEEN1551	-	inhibitor of protease aprA
1410	 64.69	0	1621670..1623391	+	573	104780726	aprD	PSEEN1552	-	alkaline protease (aprA) secretion protein aprD
1411	 68.52	0	1623388..1624680	+	430	104780727	aprE	PSEEN1553	-	alkaline protease (aprA) secretion protein aprE
1412	 67.48	0	1624691..1626040	+	449	104780728	aprF	PSEEN1554	-	alkaline protease AprA
1413	 68.86	+1	1626168..1627352	-	394	104780729	-	PSEEN1555	-	major facilitator transporter
1414	 67.57	0	1627461..1628342	+	293	104780730	-	PSEEN1556	-	LysR family transcriptional regulator
1415	 67.60	0	1628412..1629161	-	249	104780731	fabG	PSEEN1557	-	3-ketoacyl-(acyl-carrier-protein) reductase
1416	 66.99	0	1629286..1630218	+	310	104780732	-	PSEEN1558	-	LysR family transcriptional regulator
1417	 65.01	0	1630312..1630794	-	160	104780733	-	PSEEN1559	-	hypothetical protein
1418	 66.67	0	1630797..1631195	-	132	104780734	-	PSEEN1560	-	hypothetical protein
1419	 65.70	0	1631321..1632454	+	377	104780735	-	PSEEN1561	-	hypothetical protein
1420	 55.61	-1	1632503..1633072	+	189	104780736	efp	PSEEN1562	-	elongation factor P
1421	 64.80	0	1633236..1633664	-	142	104780737	ohr	PSEEN1563	-	organic hydroperoxide resistance protein
1422	 66.67	0	1633795..1634250	-	151	104780738	-	PSEEN1564	-	MarR family transcriptional regulator
1423	 69.28	+1	1634306..1635262	-	318	104780739	-	PSEEN1565	-	LysR family transcriptional regulator
1424	 64.80	0	1635374..1636123	+	249	104780740	-	PSEEN1566	-	hypothetical protein
1425	 65.02	0	1636189..1637040	-	283	104780741	-	PSEEN1567	-	LysR family transcriptional regulator
1426	 62.61	0	1637134..1637355	+	73	104780742	-	PSEEN1568	-	hypothetical protein
1427	 66.58	0	1637502..1638722	+	406	104780743	-	PSEEN1569	-	hypothetical protein
1428	 67.11	0	1638703..1640049	-	448	104780744	-	PSEEN1570	-	phospho-2-dehydro-3-deoxyheptonate aldolase, class II
1429	 65.21	0	1640169..1640924	+	251	104780745	-	PSEEN1571	-	hypothetical protein
1430	 66.90	0	1641279..1642967	+	562	104780746	-	PSEEN1572	-	DEAD-box ATP dependent DNA helicase
1431	 48.06	-2	1645351..1646124	-	257	104780747	-	PSEEN1576	-	lipoprotein
1432	 50.39	-2	1646195..1646968	-	257	104780748	-	PSEEN1577	-	lipoprotein
1433	 71.29	+1	1646983..1647804	-	273	104780749	-	PSEEN1578	-	hypothetical protein
1434	 69.83	+1	1647801..1649855	-	684	104780750	-	PSEEN1579	-	hypothetical protein
1435	 69.85	+1	1649989..1650741	-	250	104780751	-	PSEEN1580	-	aromatic ring-opening dioxygenase
1436	 66.82	0	1650842..1651492	+	216	104780752	tpm	PSEEN1581	-	thiopurine S-methyltransferase
1437	 65.32	0	1651632..1652519	-	295	104780753	htpX	PSEEN1582	-	heat shock protein HtpX
1438	 64.19	0	1652884..1654095	-	403	104780754	-	PSEEN1583	-	aminotransferase AlaT
1439	 63.13	0	1654260..1654655	+	131	104780755	msrB	PSEEN1584	-	methionine sulfoxide reductase B
1440	 63.80	0	1654668..1655156	+	162	104780756	-	PSEEN1585	-	glutathione peroxidase
1441	 66.50	0	1655146..1657500	-	784	104780757	-	PSEEN1586	-	sensor histidine kinase/response regulator hybrid
1442	 66.55	0	1657672..1658559	+	295	104780758	-	PSEEN1587	-	hypothetical protein
1443	 65.01	0	1658560..1659042	+	160	104780759	-	PSEEN1588	-	hypothetical protein
1444	 61.07	0	1659167..1659934	-	255	104780760	-	PSEEN1589	-	hypothetical protein
1445	 45.92	-2	1660966..1662189	+	407	104780761	-	PSEEN1591	-	hypothetical protein
1446	 60.83	0	1662430..1662840	-	136	104780762	-	PSEEN1593	-	hypothetical protein
1447	 66.01	0	1662994..1665441	-	815	104780763	fadE	PSEEN1594	-	acyl-CoA dehydrogenase
1448	 65.38	0	1665813..1666436	+	207	104780764	-	PSEEN1595	-	glutathione S-transferase
1449	 62.70	0	1666569..1667501	+	310	104780765	-	PSEEN1596	-	ABC transporter, ATP-binding protein
1450	 61.15	0	1667498..1668277	+	259	104780766	-	PSEEN1597	-	ABC transporter, permease protein
1451	 65.71	0	1668161..1668787	-	208	104780767	-	PSEEN1598	-	hypothetical protein
1452	 65.51	0	1671353..1671958	+	201	104780768	-	PSEEN1601	-	transporter, MotA/TolQ/ExbB proton channel family protein
1453	 64.60	0	1671955..1672389	+	144	104780769	-	PSEEN1602	-	biopolymer ExbD/TolR family transporter
1454	 69.44	+1	1672389..1673399	+	336	104780770	lpxK	PSEEN1603	-	tetraacyldisaccharide 4'-kinase
1455	 65.05	0	1673433..1673618	+	61	104780771	-	PSEEN1604	-	hypothetical protein
1456	 67.06	0	1673615..1674379	+	254	104780772	kdsB	PSEEN1605	-	3-deoxy-manno-octulosonate cytidylyltransferase
1457	 64.52	0	1674379..1674843	+	154	104780773	-	PSEEN1606	-	low molecular weight phosphotyrosine protein phosphatase
1458	 64.61	0	1674840..1675859	+	339	104780774	murB	PSEEN1607	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1459	 65.83	0	1676027..1679254	-	1075	104780775	-	PSEEN1608	-	ribonuclease E Rne
1460	 64.47	0	1680050..1681006	+	318	104780776	rluC	PSEEN1609	-	23S rRNA pseudouridylate synthase
1461	 62.41	0	1681012..1681692	+	226	104780777	-	PSEEN1610	-	HAD superfamily hydrolase
1462	 61.18	0	1681695..1682678	+	327	104780778	-	PSEEN1611	-	peptidase SppA
1463	 62.69	0	1682739..1683317	-	192	104780779	-	PSEEN1612	-	Maf-like protein
1464	 56.25	-1	1683413..1683940	+	175	104780780	-	PSEEN1614	-	hypothetical protein
1465	 56.28	-1	1683954..1684136	+	60	104780781	rpmF	PSEEN1615	-	50S ribosomal protein L32
1466	 63.11	0	1684140..1685150	+	336	104780782	plsX	PSEEN1616	-	putative glycerol-3-phosphate acyltransferase PlsX
1467	 65.18	0	1685367..1686305	+	312	104780783	fabD	PSEEN1617	-	malonyl-CoA-[acyl-carrier-protein] transacylase
1468	 64.37	0	1686322..1687062	+	246	104780784	fabG	PSEEN1618	-	3-ketoacyl-(acyl-carrier-protein) reductase
1469	 53.59	-2	1687267..1687503	+	78	104780785	acpP	PSEEN1620	-	acyl carrier protein AcpP
1470	 65.22	0	1687657..1688901	+	414	104780786	fabF	PSEEN1621	-	3-oxoacyl-(acyl carrier protein) synthase II
1471	 65.69	0	1688901..1689716	+	271	104780787	-	PSEEN1622	-	4-amino-4-deoxychorismate lyase
1472	 65.79	0	1689750..1690892	+	380	104780788	-	PSEEN1623	-	hypothetical protein
1473	 67.61	0	1690902..1691534	+	210	104780789	tmk	PSEEN1624	-	thymidylate kinase
1474	 64.64	0	1691527..1692513	+	328	104780790	holB	PSEEN1625	-	DNA polymerase III subunit delta'
1475	 67.82	0	1692546..1693328	+	260	104780791	-	PSEEN1627	-	TatD family deoxyribonuclease
1476	 65.61	0	1693831..1694964	-	377	104780792	-	PSEEN1628	-	hypothetical protein
1477	 58.33	-1	1695038..1695673	+	211	104780793	-	PSEEN1629	-	TetR family transcriptional regulator
1478	 63.05	0	1695803..1696771	+	322	104780794	-	PSEEN1630	-	molybdenum cofactor biosynthesis protein A
1479	 62.38	0	1696838..1697443	+	201	104780795	-	PSEEN1631	-	lipoprotein
1480	 59.89	0	1697455..1698015	+	186	104780796	-	PSEEN1632	-	hypothetical protein
1481	 62.80	0	1698627..1699040	+	137	104780797	-	PSEEN1633	-	hypothetical protein
1482	 63.37	0	1699054..1700268	-	404	104780798	-	PSEEN1634	-	hypothetical protein
1483	 64.83	0	1700563..1701759	-	398	104780799	tyrB	PSEEN1635	-	aromatic amino acid aminotransferase
1484	 63.74	0	1702050..1704065	+	671	104780800	uvrB	PSEEN1636	-	excinuclease ABC subunit B
1485	 62.28	0	1704222..1705772	-	516	104780801	-	PSEEN1637	-	EmrB/QacA family drug resistance transporter
1486	 66.15	0	1705762..1706919	-	385	104780802	-	PSEEN1638	-	HlyD family secretion protein
1487	 63.09	0	1706955..1708436	+	493	104780803	gltX	PSEEN1639	-	glutamyl-tRNA synthetase
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.