IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1200	 64.92	0	1383635..1384264	+	209	104780516	-	PSEEN1321	-	glutathione S-transferase
1201	 62.95	0	1384283..1386298	+	671	104780517	-	PSEEN1322	-	oxidoreductase, FAD-binding
1202	 65.89	0	1386446..1387345	+	299	104780518	-	PSEEN1324	-	LysR family transcriptional regulator
1203	 66.46	0	1387478..1388896	-	472	104780519	-	PSEEN1325	-	GntR family transcriptional regulator
1204	 68.06	0	1388914..1390344	-	476	104780520	-	PSEEN1326	-	hypothetical protein
1205	 60.23	0	1390934..1391275	+	113	104780521	-	PSEEN1327	-	transcriptional regulator
1206	 64.37	0	1391268..1392527	+	419	104780522	-	PSEEN1328	-	hypothetical protein
1207	 62.51	0	1392559..1393593	+	344	104780523	-	PSEEN1329	-	hypothetical protein
1208	 58.54	-1	1393621..1394850	-	409	104780524	-	PSEEN1330	-	hypothetical protein
1209	 58.24	-1	1394850..1395110	-	86	104780525	-	PSEEN1331	-	hypothetical protein
1210	 66.85	0	1395439..1395975	-	178	104780526	-	PSEEN1333	-	hypothetical protein
1211	 60.82	0	1396591..1397838	-	415	104780527	nrdB	PSEEN1335	-	ribonucleotide-diphosphate reductase subunit beta
1212	 63.19	0	1398452..1401328	-	958	104780528	nrdA	PSEEN1337	-	ribonucleotide-diphosphate reductase subunit alpha
1213	 69.11	+1	1402131..1402826	+	231	104780529	-	PSEEN1339	-	DNA-binding response regulator
1214	 68.35	0	1402823..1404427	+	534	104780530	-	PSEEN1340	-	sensory histidine kinase
1215	 69.94	+1	1404424..1405125	-	233	104780531	-	PSEEN1341	-	phosphopantetheinyl transferase component of siderophore synthetase
1216	 66.29	0	1405274..1406065	-	263	104780532	-	PSEEN1342	-	hydrolase; dienelactone hydrolase
1217	 64.03	0	1406200..1406805	+	201	104780533	oprH	PSEEN1343	-	outer membrane protein H1
1218	 66.52	0	1406934..1407611	+	225	104780534	phoP	PSEEN1345	-	transcriptional regulatory protein PhoP
1219	 66.15	0	1407608..1408954	+	448	104780535	phoQ	PSEEN1346	-	sensor protein PhoQ
1220	 63.87	0	1409367..1410689	+	440	104780536	dctA-1	PSEEN1347	-	C4-dicarboxylate transporter DctA
1221	 63.64	0	1410793..1411287	-	164	104780537	-	PSEEN1348	-	hypothetical protein
1222	 63.67	0	1411427..1412026	-	199	104780538	-	PSEEN1349	-	hypothetical protein
1223	 62.42	0	1412290..1413114	+	274	104780539	-	PSEEN1350	-	PP-loop ATPase
1224	 63.54	0	1413119..1413790	+	223	104780540	-	PSEEN1351	-	DNA-glycosylase
1225	 65.94	0	1413907..1414320	-	137	104780541	-	PSEEN1352	-	hypothetical protein
1226	 70.63	+1	1414313..1414918	-	201	104780542	-	PSEEN1353	-	tryptophan repressor binding protein WrbA
1227	 67.80	0	1414915..1415268	-	117	104780543	-	PSEEN1354	-	arsenate reductase
1228	 65.81	0	1415355..1415822	+	155	104780544	-	PSEEN1355	-	thioredoxin
1229	 64.94	0	1415892..1416296	-	134	104780545	-	PSEEN1356	-	hypothetical protein
1230	 64.83	0	1416297..1416731	-	144	104780546	-	PSEEN1357	-	hypothetical protein
1231	 66.87	0	1416763..1417749	-	328	104780547	ldhA	PSEEN1358	-	D-lactate dehydrogenase, NAD-dependent
1232	 67.39	0	1417841..1420597	-	918	104780548	gacS	PSEEN1359	-	GacS sensor kinase protein
1233	 65.01	0	1420773..1421495	+	240	104780549	-	PSEEN1360	-	DNA-binding response regulator
1234	 65.92	0	1421499..1422842	+	447	104780550	-	PSEEN1361	-	sensor histidine kinase
1235	 65.11	0	1423066..1423965	+	299	104780551	cysM	PSEEN1362	-	cysteine synthase B
1236	 67.48	0	1423965..1425323	+	452	104780552	rumA	PSEEN1363	-	23S rRNA 5-methyluridine methyltransferase
1237	 64.17	0	1425423..1427663	+	746	104780553	-	PSEEN1364	-	GTP pyrophosphokinase RelA
1238	 64.39	0	1427769..1428602	+	277	104780554	mazG	PSEEN1365	-	nucleoside triphosphate pyrophosphohydrolase
1239	 58.33	-1	1428629..1429168	+	179	104780555	-	PSEEN1366	-	hypothetical protein
1240	 57.92	-1	1429215..1429397	-	60	104780556	-	PSEEN1367	-	hypothetical protein
1241	 62.03	0	1429673..1430383	-	236	104780557	-	PSEEN1368	-	hypothetical protein
1242	 65.90	0	1430392..1431045	-	217	104780558	purN	PSEEN1369	-	phosphoribosylglycinamide formyltransferase
1243	 65.16	0	1431045..1432103	-	352	104780559	purM	PSEEN1370	-	phosphoribosylaminoimidazole synthetase
1244	 67.14	0	1432448..1433500	+	350	104780560	-	PSEEN1371	-	hypothetical protein
1245	 63.97	0	1433513..1434586	+	357	104780561	-	PSEEN1372	-	permease
1246	 63.87	0	1434714..1435499	+	261	104780562	-	PSEEN1373	-	DNA replication initiation factor
1247	 61.99	0	1435620..1436261	+	213	104780563	-	PSEEN1374	-	hypothetical protein
1248	 64.61	0	1436410..1436943	+	177	104780564	-	PSEEN1375	-	hypothetical protein
1249	 59.96	0	1437180..1439774	+	864	104780565	-	PSEEN1376	-	hypothetical protein
1250	 65.63	0	1439761..1440339	-	192	104780566	-	PSEEN1377	-	hypothetical protein
1251	 63.89	0	1440822..1441433	+	203	104780567	-	PSEEN1378	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1252	 68.52	0	1441430..1442725	+	431	104780568	-	PSEEN1379	-	cobyrinic acid a,c-diamide synthase
1253	 67.18	0	1442791..1443372	+	193	104780569	-	PSEEN1380	-	nitroreductase; cobalamine biosynthesis protein
1254	 68.43	0	1443369..1444277	+	302	104780570	cobD	PSEEN1381	-	cobalamin biosynthesis protein
1255	 67.57	0	1444270..1445262	+	330	104780571	-	PSEEN1382	-	threonine-phosphate decarboxylase
1256	 68.37	0	1445259..1446722	+	487	104780572	-	PSEEN1383	-	cobyric acid synthase
1257	 67.62	0	1446715..1447236	+	173	104780573	cobU	PSEEN1384	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1258	 69.98	+1	1447233..1448288	+	351	104780574	cobT	PSEEN1385	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1259	 67.90	0	1448285..1448851	+	188	104780575	-	PSEEN1386	-	alpha-ribazole-5'-phosphate phosphatase CobC
1260	 66.67	0	1448853..1449587	+	244	104780576	cobS	PSEEN1387	-	cobalamin synthase
1261	 64.80	0	1449746..1450924	+	392	104780577	-	PSEEN1388	-	glycosidase
1262	 66.42	0	1450979..1451383	+	134	104780578	-	PSEEN1389	-	MarR family transcriptional regulator
1263	 65.17	0	1451448..1452650	+	400	104780579	-	PSEEN1390	-	transporter
1264	 64.23	0	1452647..1452769	+	40	104780580	-	PSEEN1391	-	hypothetical protein
1265	 60.14	0	1452816..1453367	+	183	104780581	-	PSEEN1392	-	glutathione peroxidase
1266	 61.30	0	1454241..1454501	-	86	104780582	-	PSEEN1394	-	hypothetical protein
1267	 64.52	0	1454618..1455550	+	310	104780583	-	PSEEN1395	-	LysR family transcriptional regulator
1268	 59.94	0	1455593..1456855	-	420	104780584	-	PSEEN1396	-	long-chain fatty acid transporter
1269	 65.42	0	1457002..1457484	-	160	104780585	-	PSEEN1397	-	hypothetical protein
1270	 60.00	0	1457745..1457969	-	74	104780586	-	PSEEN1400	-	hypothetical protein
1271	 66.43	0	1458899..1459318	+	139	104780587	-	PSEEN1403	-	hypothetical protein
1272	 64.83	0	1459575..1461047	+	490	104780588	-	PSEEN1404	-	hypothetical protein
1273	 67.18	0	1461019..1464495	-	1158	104780589	-	PSEEN1405	-	sensory box histidine kinase/response regulator hybrid
1274	 66.92	0	1464717..1465901	-	394	104780590	-	PSEEN1406	-	major facilitator family transporter
1275	 67.11	0	1466065..1467204	+	379	104780591	-	PSEEN1407	-	C4-dicarboxylate transporter/malic acid transport protein
1276	 63.47	0	1467556..1469430	+	624	104780592	-	PSEEN1408	-	acyltransferase
1277	 64.78	0	1469449..1469766	-	105	104780593	sugE	PSEEN1409	-	multidrug efflux pump
1278	 66.67	0	1469933..1470895	-	320	104780594	-	PSEEN1410	-	transporter; sodium/bile acid transporter family protein
1279	 65.15	0	1471059..1471979	-	306	104780595	rdgC	PSEEN1411	-	recombination associated protein
1280	 65.91	0	1472519..1474225	+	568	104780596	hscC	PSEEN1412	-	chaperone protein HscC
1281	 67.05	0	1474219..1476846	-	875	104780597	-	PSEEN1413	-	heat-shock protein DnaJ-like
1282	 66.81	0	1476843..1477535	-	230	104780598	-	PSEEN1414	-	hypothetical protein
1283	 65.25	0	1477928..1478704	-	258	104780599	-	PSEEN1415	-	methionine aminopeptidase, type I Map
1284	 63.73	0	1478701..1478904	-	67	104780600	-	PSEEN1416	-	hypothetical protein
1285	 66.97	0	1479244..1483239	+	1331	104780601	narB	PSEEN1417	-	assimilatory nitrate reductase
1286	 66.94	0	1483535..1486090	+	851	104780602	nirB	PSEEN1418	-	nitrite reductase, large subunit, nucleotide-and Fe/S-cluster binding
1287	 68.04	0	1486090..1486452	+	120	104780603	-	PSEEN1419	-	nitrite reductase, small subunit NirD
1288	 63.90	0	1486783..1491483	+	1566	104780604	-	PSEEN1420	-	hypothetical protein
1289	 41.91	-2	1491492..1492097	+	201	104780605	-	PSEEN1421	-	hypothetical protein
1290	 60.74	0	1492401..1492670	-	89	104780606	-	PSEEN1423	-	hypothetical protein
1291	 61.25	0	1492792..1493031	-	79	104780607	-	PSEEN1424	-	hypothetical protein
1292	 69.56	+1	1493674..1494606	+	310	104780608	pcaQ	PSEEN1425	-	pca operon transcriptional activator PcaQ
1293	 62.55	0	1494774..1495502	+	242	104780609	-	PSEEN1426	-	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)
1294	 68.71	+1	1495786..1496226	+	146	104780610	-	PSEEN1427	-	hypothetical protein
1295	 66.09	0	1496317..1496661	+	114	104780611	-	PSEEN1428	-	Cro/CI family transcriptional regulator
1296	 68.00	0	1496658..1497032	+	124	104780612	-	PSEEN1429	-	hypothetical protein
1297	 65.24	0	1497133..1498884	-	583	104780613	-	PSEEN1430	-	diguanylate cyclase/phosphodiesterase
1298	 63.12	0	1498993..1501107	-	704	104780614	-	PSEEN1431	-	carboxy-terminal protease for penicillin-binding protein 3 Prc
1299	 67.60	0	1501217..1502179	+	320	104780615	-	PSEEN1432	-	alcohol dehydrogenase, zinc-containing
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.