IslandPathversion 1.0

IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1101	 65.13	0	1274579..1275556	+	325	104780417	-	PSEEN1209	-	OmpA/MotB family outer membrane protein
1102	 59.85	0	1275685..1276902	+	405	104780418	argG	PSEEN1210	-	argininosuccinate synthase
1103	 56.82	-1	1276957..1277484	-	175	104780419	-	PSEEN1211	-	hypothetical protein
1104	 56.46	-1	1277859..1278485	+	208	104780420	-	PSEEN1212	-	response regulator
1105	 56.50	-1	1278532..1278708	-	58	104780421	-	PSEEN1213	-	hypothetical protein
1106	 58.37	-1	1278813..1279451	-	212	104780422	nth	PSEEN1214	-	endonuclease III
1107	 65.80	0	1279456..1279914	-	152	104780423	-	PSEEN1215	-	hypothetical protein
1108	 63.58	0	1279970..1280584	-	204	104780424	-	PSEEN1216	-	electron transport complex protein RnfG
1109	 64.92	0	1280581..1281552	-	323	104780425	-	PSEEN1217	-	electron transport complex protein RnfD
1110	 64.58	0	1281539..1282303	-	254	104780426	-	PSEEN1218	-	lectron transport complex protein RnfB
1111	 63.75	0	1282300..1282848	-	182	104780427	-	PSEEN1219	-	electron transport complex protein RnfA
1112	 62.50	0	1282920..1284959	-	679	104780428	metG	PSEEN1220	-	methionyl-tRNA synthetase
1113	 65.21	0	1285118..1286212	+	364	104780429	-	PSEEN1221	-	Mrp family ATPase
1114	 53.33	-2	1286392..1286601	-	69	104780430	capB	PSEEN1222	-	cold shock protein CapB
1115	 64.94	0	1287594..1287824	+	76	104780431	-	PSEEN1224	-	hypothetical protein
1116	 66.31	0	1287844..1288959	-	371	104780432	-	PSEEN1225	-	hypothetical protein
1117	 69.33	+1	1289113..1291548	-	811	104780433	-	PSEEN1226	-	penicillin amidase
1118	 62.75	0	1291734..1291937	-	67	104780434	-	PSEEN1227	-	hypothetical protein
1119	 64.57	0	1291945..1292421	-	158	104780435	-	PSEEN1228	-	hypothetical protein
1120	 67.51	0	1292424..1292900	-	158	104780436	-	PSEEN1229	-	hypothetical protein
1121	 67.07	0	1292906..1293400	-	164	104780437	-	PSEEN1230	-	hypothetical protein
1122	 63.92	0	1293561..1294253	+	230	104780438	-	PSEEN1231	-	OmpA family outer membrane protein
1123	 66.81	0	1294343..1295062	+	239	104780439	-	PSEEN1232	-	OmpA family outer membrane protein
1124	 57.97	-1	1295163..1295438	+	91	104780440	-	PSEEN1233	-	hypothetical protein
1125	 67.72	0	1295431..1296189	+	252	104780441	-	PSEEN1234	-	hypothetical protein
1126	 65.49	0	1296377..1297483	+	368	104780442	-	PSEEN1235	-	oxidireductase
1127	 61.56	0	1297485..1297817	-	110	104780443	-	PSEEN1236	-	hypothetical protein
1128	 60.00	0	1297814..1298068	-	84	104780444	hicA-1	PSEEN1237	-	hypothetical protein
1129	 65.54	0	1298213..1299637	-	474	104780445	-	PSEEN1238	-	gamma-aminobutyraldehyde dehydrogenase
1130	 64.68	0	1299655..1300461	-	268	104780446	-	PSEEN1239	-	ABC transporter, permease protein
1131	 64.11	0	1300451..1301389	-	312	104780447	-	PSEEN1240	-	ABC transporter, permease protein
1132	 65.30	0	1301386..1302411	-	341	104780448	-	PSEEN1241	-	ABC transporter, ATP-binding protein
1133	 63.16	0	1302635..1303774	-	379	104780449	-	PSEEN1242	-	ABC transporter, periplasmic polyamine-binding protein
1134	 67.54	0	1304035..1304721	+	228	104780450	-	PSEEN1243	-	hypothetical protein
1135	 63.28	0	1304850..1306472	+	540	104780451	-	PSEEN1245	-	methyl-accepting chemotaxis transducer
1136	 69.54	+1	1306478..1306999	+	173	104780452	-	PSEEN1246	-	chemotaxis signal transduction protein
1137	 65.71	0	1306996..1308243	+	415	104780453	-	PSEEN1247	-	methyltransferase, CheR-like
1138	 65.17	0	1308240..1308905	+	221	104780454	-	PSEEN1248	-	chemotaxis signal transduction protein
1139	 66.01	0	1308902..1311187	+	761	104780455	-	PSEEN1249	-	sensor histidine kinase/response regulator hybrid
1140	 68.24	0	1311184..1312197	+	337	104780456	-	PSEEN1250	-	chemotaxis-specific methylesterase
1141	 61.69	0	1312249..1313253	+	334	104780457	-	PSEEN1251	-	response regulator/GGDEF domain-containing protein
1142	 57.76	-1	1313970..1315148	+	392	104780458	-	PSEEN1252	-	transposase
1143	 63.05	0	1315660..1316755	+	364	104780459	prfB	PSEEN1254	-	peptide chain release factor 2
1144	 62.34	0	1316849..1318351	+	500	104780460	lysS	PSEEN1255	-	lysyl-tRNA synthetase
1145	 67.66	0	1318447..1319151	+	234	104780461	-	PSEEN1256	-	TetR family transcriptional regulator
1146	 64.48	0	1319181..1319729	+	182	104780462	-	PSEEN1257	-	lipoprotein
1147	 62.83	0	1319843..1321120	+	425	104780463	-	PSEEN1258	-	hypothetical protein
1148	 64.39	0	1321092..1322015	+	307	104780464	-	PSEEN1259	-	lipoprotein
1149	 63.91	0	1322012..1322338	+	108	104780465	-	PSEEN1260	-	hypothetical protein
1150	 65.15	0	1322652..1323440	-	262	104780466	-	PSEEN1261	-	OmpA family outer membrane protein
1151	 67.63	0	1323487..1323900	-	137	104780467	-	PSEEN1262	-	hypothetical protein
1152	 63.19	0	1324167..1324511	-	114	104780468	-	PSEEN1263	-	hypothetical protein
1153	 68.80	+1	1324656..1327283	+	875	104780469	ppc	PSEEN1264	-	phosphoenolpyruvate carboxylase
1154	 61.75	0	1327542..1328192	+	216	104780470	adk	PSEEN1265	-	adenylate kinase
1155	 67.56	0	1328283..1328957	+	224	104780471	-	PSEEN1266	-	glycoprotein endopeptidase metalloprotease
1156	 64.26	0	1329089..1329379	+	96	104780472	-	PSEEN1267	-	hypothetical protein
1157	 63.33	0	1329383..1330252	+	289	104780473	-	PSEEN1268	-	hypothetical protein
1158	 65.34	0	1330283..1331113	+	276	104780474	-	PSEEN1269	-	carboxyvinyl-carboxyphosphonate phosphorylmutase
1159	 64.90	0	1331125..1331745	-	206	104780475	-	PSEEN1270	-	hypothetical protein
1160	 66.79	0	1331841..1332623	+	260	104780476	-	PSEEN1271	-	hypothetical protein
1161	 65.59	0	1332887..1333351	-	154	104780477	-	PSEEN1272	-	hypothetical protein
1162	 65.87	0	1333450..1335594	+	714	104780478	dinG	PSEEN1273	-	ATP-dependent DNA helicase DinG
1163	 65.36	0	1335676..1337895	+	739	104780479	-	PSEEN1274	-	hydrolase
1164	 65.97	0	1338030..1339175	+	381	104780480	-	PSEEN1275	-	beta-lactamase
1165	 65.33	0	1339275..1340243	+	322	104780481	-	PSEEN1276	-	OmpA family outer membrane protein
1166	 65.12	0	1340263..1340910	+	215	104780482	-	PSEEN1277	-	pyridoxamine 5'-phosphate oxidase
1167	 63.20	0	1341030..1341260	-	76	104780483	-	PSEEN1278	-	hypothetical protein
1168	 65.81	0	1341411..1341875	+	154	104780484	-	PSEEN1279	-	lipoprotein
1169	 64.44	0	1341953..1343566	-	537	104780485	-	PSEEN1280	-	FAD-dependent dehydrogenases
1170	 67.11	0	1343670..1344347	-	225	104780486	-	PSEEN1281	-	lipoprotein
1171	 63.25	0	1344578..1345279	-	233	104780487	livF	PSEEN1282	-	branched-chain amino acid ABC transporter, ATP-binding protein
1172	 63.54	0	1345280..1346047	-	255	104780488	livG	PSEEN1283	-	leucine/isoleucine/valine transporter ATP-binding subunit
1173	 63.48	0	1346044..1347300	-	418	104780489	livM	PSEEN1284	-	leucine/isoleucine/valine transporter permease subunit
1174	 62.66	0	1347297..1348220	-	307	104780490	livH	PSEEN1285	-	branched-chain amino acid ABC transporter, permease protein
1175	 61.20	0	1348459..1349574	-	371	104780491	livK	PSEEN1286	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
1176	 59.48	-1	1349935..1350240	+	101	104780492	-	PSEEN1288	-	hypothetical protein
1177	 61.54	0	1350492..1352675	-	727	104780493	-	PSEEN1289	-	hypothetical protein
1178	 67.68	0	1352868..1353755	+	295	104780494	-	PSEEN1291	-	3-hydroxyisobutyrate dehydrogenase
1179	 64.24	0	1353655..1355919	-	754	104780495	-	PSEEN1292	-	signal transduction protein
1180	 66.39	0	1356152..1358998	-	948	104780496	hepA	PSEEN1293	-	ATP-dependent helicase HepA
1181	 64.08	0	1359126..1359821	+	231	104780497	-	PSEEN1294	-	hypothetical protein
1182	 69.11	+1	1359934..1360260	+	108	104780498	-	PSEEN1295	-	hypothetical protein
1183	 59.88	0	1360331..1360492	+	53	104780499	-	PSEEN1296	-	hypothetical protein
1184	 53.85	-2	1360628..1360744	+	38	104780500	-	PSEEN1297	-	hypothetical protein
1185	 68.68	+1	1361000..1362988	+	662	104780501	-	PSEEN1298	-	hypothetical protein
1186	 63.77	0	1362975..1363181	+	68	104780502	-	PSEEN1299	-	hypothetical protein
1187	 64.48	0	1363193..1364062	+	289	104780503	-	PSEEN1300	-	efflux transporter, membrane fusion protein
1188	 66.26	0	1364191..1364919	-	242	104780504	-	PSEEN1301	-	short chain dehydrogenase/reductase family oxidoreductase
1189	 67.56	0	1365021..1365800	+	259	104780505	-	PSEEN1302	-	LysR family transcriptional regulator
1190	 64.30	0	1365805..1366563	-	252	104780506	-	PSEEN1303	-	short chain dehydrogenase/reductase family oxidoreductase
1191	 65.90	0	1366683..1367600	+	305	104780507	-	PSEEN1304	-	LysR family transcriptional regulator
1192	 64.20	0	1367539..1368753	-	404	104780508	-	PSEEN1305	-	sensor histidine kinase
1193	 65.14	0	1368940..1369266	+	108	104780509	-	PSEEN1306	-	hypothetical protein
1194	 65.20	0	1369278..1371860	-	860	104780510	-	PSEEN1307	-	sensory box-containing diguanylate cyclase
1195	 65.74	0	1371912..1372988	-	358	104780511	-	PSEEN1308	-	hypothetical protein
1196	 64.12	0	1373151..1374209	+	352	104780512	-	PSEEN1309	-	Zinc-dependent hydrolase
1197	 61.45	0	1374206..1375087	-	293	104780513	-	PSEEN1310	-	formate/nitrate transporter
1198	 63.87	0	1381072..1382715	+	547	104780514	-	PSEEN1319	-	acetolactate synthase
1199	 57.66	-1	1382879..1383433	+	184	104780515	-	PSEEN1320	-	hypothetical protein
1200	 64.92	0	1383635..1384264	+	209	104780516	-	PSEEN1321	-	glutathione S-transferase
64.12	MEAN

4.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.