IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1014	 66.95	0	1167212..1168276	-	354	104780330	-	PSEEN1116	-	lipoprotein
1015	 68.42	0	1168295..1169716	-	473	104780331	-	PSEEN1117	-	hypothetical protein
1016	 65.99	0	1170000..1171328	-	442	104780332	-	PSEEN1119	-	hypothetical protein
1017	 64.13	0	1171486..1173537	-	683	104780333	-	PSEEN1120	-	diguanylate cyclase/phosphodiesterase
1018	 61.14	0	1173901..1174497	-	198	104780334	sodB	PSEEN1121	-	superoxide dismutase
1019	 69.50	+1	1174749..1175348	-	199	104780335	-	PSEEN1123	-	amino acid transporter LysE
1020	 67.23	0	1175473..1176363	+	296	104780336	-	PSEEN1124	-	chromosome replication initiation inhibitor protein
1021	 65.76	0	1176413..1177408	+	331	104780337	-	PSEEN1125	-	nucleoside-diphosphate-sugar epimerases
1022	 64.61	0	1177496..1178320	+	274	104780338	-	PSEEN1126	-	hypothetical protein
1023	 66.95	0	1178385..1179434	-	349	104780339	xenB	PSEEN1127	-	xenobiotic reductase B
1024	 63.37	0	1179481..1179783	-	100	104780340	-	PSEEN1128	-	ArsR family transcriptional regulator
1025	 66.50	0	1179937..1180530	+	197	104780341	-	PSEEN1129	-	hypothetical protein
1026	 61.73	0	1180906..1181148	+	80	104780342	-	PSEEN1130	-	hypothetical protein
1027	 61.85	0	1181273..1181542	+	89	104780343	-	PSEEN1131	-	hypothetical protein
1028	 46.56	-2	1181683..1181871	-	62	104780344	-	PSEEN1132	-	hypothetical protein
1029	 44.23	-2	1182276..1182743	-	155	104780345	-	PSEEN1134	-	hypothetical protein
1030	 63.57	0	1182750..1187402	-	1550	104780346	-	PSEEN1135	-	hypothetical protein
1031	 69.99	+1	1187693..1188475	-	260	104780347	-	PSEEN1136	-	acyltransferase
1032	 67.72	0	1188475..1189230	-	251	104780348	-	PSEEN1137	-	hypothetical protein
1033	 68.58	0	1189375..1190262	+	295	104780349	-	PSEEN1138	-	hypothetical protein
1034	 66.11	0	1190409..1191485	+	358	104780350	-	PSEEN1139	-	beta-lactamase
1035	 66.33	0	1191482..1191778	+	98	104780351	-	PSEEN1140	-	hypothetical protein
1036	 65.98	0	1191823..1192404	+	193	104780352	-	PSEEN1141	-	hypothetical protein
1037	 67.62	0	1192406..1193563	+	385	104780353	-	PSEEN1142	-	phospholipase
1038	 65.98	0	1193645..1194223	+	192	104780354	-	PSEEN1143	-	protease C56
1039	 65.14	0	1194394..1194984	+	196	104780355	-	PSEEN1144	-	hypothetical protein
1040	 65.29	0	1195074..1196597	-	507	104780356	-	PSEEN1145	-	fumarate hydratase, class I
1041	 66.67	0	1196885..1197805	+	306	104780357	-	PSEEN1146	-	hypothetical protein
1042	 66.05	0	1197899..1199353	-	484	104780358	pykA	PSEEN1147	-	pyruvate kinase
1043	 63.31	0	1199534..1199920	+	128	104780359	-	PSEEN1148	-	hypothetical protein
1044	 60.83	0	1200045..1200404	+	119	104780360	-	PSEEN1149	-	hypothetical protein
1045	 61.08	0	1200467..1201897	+	476	104780361	sbcB	PSEEN1150	-	exonuclease I
1046	 57.67	-1	1201970..1202347	-	125	104780362	mvaT	PSEEN1151	-	transcriptional regulator MvaT, P16 subunit
1047	 61.50	0	1202647..1203498	+	283	104780363	purU	PSEEN1152	-	formyltetrahydrofolate deformylase
1048	 65.62	0	1203514..1203705	+	63	104780364	-	PSEEN1153	-	hypothetical protein
1049	 62.83	0	1203853..1205727	-	624	104780365	-	PSEEN1154	-	methyl-accepting chemotaxis transducer
1050	 65.79	0	1205900..1207375	+	491	104780366	-	PSEEN1155	-	hypothetical protein
1051	 63.68	0	1207571..1209043	-	490	104780367	pitA	PSEEN1157	-	inorganic phosphate transporter
1052	 58.57	-1	1209344..1209553	-	69	104780368	-	PSEEN1158	-	hypothetical protein
1053	 50.00	-2	1209721..1209954	+	77	104780369	-	PSEEN1159	-	hypothetical protein
1054	 65.75	0	1210137..1211006	+	289	104780370	pcaR	PSEEN1160	-	regulatory protein for pca operon (activator)
1055	 65.18	0	1211430..1212776	+	448	104780371	pcaK	PSEEN1162	-	4-hydroxybenzoate transporter
1056	 65.51	0	1213039..1213899	+	286	104780372	catI	PSEEN1163	-	3-oxoadipate:succinyl-CoA transferase, subunit A
1057	 67.56	0	1213896..1214675	+	259	104780373	catJ	PSEEN1164	-	3-oxoadipate:succinyl-CoA transferase, subunit B
1058	 67.58	0	1214675..1215877	+	400	104780374	pcaF	PSEEN1165	-	beta-ketoadipyl CoA thiolase
1059	 62.64	0	1216100..1217389	+	429	104780375	pcaT	PSEEN1166	-	major facilitator superfamily alpha-ketoglutarate permease
1060	 69.11	+1	1217399..1218751	+	450	104780376	pcaB	PSEEN1167	-	3-carboxy-cis,cis-muconate cycloisomerase
1061	 65.15	0	1218764..1219555	+	263	104780377	pcaD	PSEEN1168	-	3-oxoadipate enol-lactonase II (Beta-ketoadipate enol-lactone hydrolase II)
1062	 63.10	0	1219566..1219958	+	130	104780378	pcaC	PSEEN1169	-	gamma-carboxymuconolactone decarboxylase (CMD)
1063	 67.54	0	1220058..1222469	-	803	104780379	-	PSEEN1170	-	glucose dehydrogenase Gcd
1064	 63.70	0	1222501..1223850	-	449	104780380	oprB	PSEEN1171	-	porin B precursor (Outer membrane protein D1) (glucose porin)
1065	 60.99	0	1224091..1229097	-	1668	104780381	-	PSEEN1172	-	hypothetical protein
1066	 67.44	0	1229408..1231465	-	685	104780382	-	PSEEN1173	-	TonB-dependent receptor
1067	 63.06	0	1231703..1231924	+	73	104780383	-	PSEEN1174	-	hypothetical protein
1068	 64.77	0	1231924..1232556	+	210	104780384	-	PSEEN1175	-	hypothetical protein
1069	 67.32	0	1232636..1233397	-	253	104780385	-	PSEEN1176	-	iron-chelator utilization protein
1070	 70.35	+1	1233394..1233936	-	180	104780386	-	PSEEN1177	-	PadR family transcriptional regulator
1071	 65.42	0	1234157..1237279	-	1040	104780387	-	PSEEN1178	-	membrane carboxypeptidase (penicillin-binding protein)
1072	 64.62	0	1237706..1239124	+	472	104780388	-	PSEEN1179	-	amino acid permease
1073	 65.25	0	1239288..1240907	-	539	104780389	-	PSEEN1180	-	ferredoxin-dependent glutamate synthase.
1074	 63.95	0	1241086..1241343	+	85	104780390	rpmE2	PSEEN1181	-	50S ribosomal protein L31 type B
1075	 67.77	0	1241427..1245701	-	1424	104780391	-	PSEEN1182	-	ATP-dependent DNA helicase Lhr
1076	 68.12	0	1245819..1246232	+	137	104780392	-	PSEEN1183	-	hydrolase, MutT/nudix family protein
1077	 67.76	0	1246216..1247133	-	305	104780393	-	PSEEN1184	-	transcriptional regulator MetR
1078	 65.18	0	1247320..1248327	+	335	104780394	-	PSEEN1185	-	alpha/beta fold family hydrolase
1079	 62.80	0	1248457..1248792	-	111	104780395	glpM	PSEEN1187	-	membrane protein required for efficient alginate biosynthesis
1080	 67.34	0	1248820..1250148	-	442	104780396	-	PSEEN1188	-	sigma-54 dependent response regulator
1081	 65.83	0	1250145..1252049	-	634	104780397	-	PSEEN1189	-	sensor histidine kinase
1082	 61.77	0	1252118..1252852	-	244	104780398	gltL	PSEEN1190	-	glutamate-aspartate ABC transporter, ATP-binding protein
1083	 61.61	0	1252849..1253520	-	223	104780399	gltK	PSEEN1191	-	glutamate-aspartate ABC transporter, permease protein
1084	 62.38	0	1253521..1254267	-	248	104780400	gltJ	PSEEN1192	-	glutamate/aspartate ABC transporter, permease protein
1085	 60.68	0	1254415..1255332	-	305	104780401	gltI	PSEEN1193	-	glutamate/aspartate ABC transporter, periplasmic binding protein
1086	 61.44	0	1255660..1259793	+	1377	104780402	-	PSEEN1194	-	hypothetical protein
1087	 66.02	0	1259794..1261332	-	512	104780403	glpD	PSEEN1195	-	glycerol-3-phosphate dehydrogenase
1088	 61.77	0	1261550..1262305	-	251	104780404	glpR	PSEEN1196	-	glycerol-3-phosphate regulon repressor
1089	 63.40	0	1262463..1263962	-	499	104780405	glpK	PSEEN1197	-	glycerol kinase
1090	 63.38	0	1264043..1264894	-	283	104780406	glpF	PSEEN1198	-	glycerol uptake facilitator protein
1091	 64.12	0	1265201..1265671	+	156	104780407	-	PSEEN1199	-	hypothetical protein
1092	 64.95	0	1265758..1266867	-	369	104780408	-	PSEEN1200	-	ABC transporter, ATP-binding protein
1093	 63.74	0	1266864..1267784	-	306	104780409	argI	PSEEN1201	-	ornithine carbamoyltransferase
1094	 64.01	0	1268148..1270256	+	702	104780410	-	PSEEN1202	-	oxidoreductase molybdopterin-binding
1095	 58.63	-1	1270348..1270683	+	111	104780411	-	PSEEN1203	-	hypothetical protein
1096	 55.06	-2	1270853..1271326	-	157	104780412	bfrB	PSEEN1204	-	bacterioferritin
1097	 59.01	-1	1271529..1271750	-	73	104780413	-	PSEEN1205	-	bacterioferritin-associated ferredoxin BFD
1098	 60.70	0	1271964..1272566	+	200	104780414	-	PSEEN1206	-	peroxiredoxin (alkyl hydroperoxide reductase C)
1099	 62.96	0	1272731..1273405	-	224	104780415	rnt	PSEEN1207	-	ribonuclease T
1100	 66.67	0	1273402..1274448	-	348	104780416	pyrC	PSEEN1208	-	dihydroorotase
1101	 65.13	0	1274579..1275556	+	325	104780417	-	PSEEN1209	-	OmpA/MotB family outer membrane protein
1102	 59.85	0	1275685..1276902	+	405	104780418	argG	PSEEN1210	-	argininosuccinate synthase
1103	 56.82	-1	1276957..1277484	-	175	104780419	-	PSEEN1211	-	hypothetical protein
1104	 56.46	-1	1277859..1278485	+	208	104780420	-	PSEEN1212	-	response regulator
1105	 56.50	-1	1278532..1278708	-	58	104780421	-	PSEEN1213	-	hypothetical protein
1106	 58.37	-1	1278813..1279451	-	212	104780422	nth	PSEEN1214	-	endonuclease III
1107	 65.80	0	1279456..1279914	-	152	104780423	-	PSEEN1215	-	hypothetical protein
1108	 63.58	0	1279970..1280584	-	204	104780424	-	PSEEN1216	-	electron transport complex protein RnfG
1109	 64.92	0	1280581..1281552	-	323	104780425	-	PSEEN1217	-	electron transport complex protein RnfD
1110	 64.58	0	1281539..1282303	-	254	104780426	-	PSEEN1218	-	lectron transport complex protein RnfB
1111	 63.75	0	1282300..1282848	-	182	104780427	-	PSEEN1219	-	electron transport complex protein RnfA
1112	 62.50	0	1282920..1284959	-	679	104780428	metG	PSEEN1220	-	methionyl-tRNA synthetase
1113	 65.21	0	1285118..1286212	+	364	104780429	-	PSEEN1221	-	Mrp family ATPase
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.