IslandPath Analysis: Pseudomonas entomophila L48



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 4.52
Pseudomonas entomophila L48, complete genome - 1..5888780
5134 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
977	 65.00	0	1129595..1130194	+	199	104780293	-	PSEEN1077	-	Maf-like protein
978	 63.24	0	1130249..1131706	+	485	104780294	cafA	PSEEN1078	-	ibonuclease G
979	 66.14	0	1131795..1135607	+	1270	104780295	-	PSEEN1079	-	hypothetical protein
980	 68.31	0	1135622..1136473	+	283	104780296	-	PSEEN1080	-	carbon-nitrogen family hydrolase
981	 66.04	0	1136476..1137915	+	479	104780297	tldD	PSEEN1081	-	peptidase U62 TldD
982	 64.37	0	1138038..1138559	-	173	104780298	-	PSEEN1082	-	hypothetical protein
983	 65.03	0	1138669..1140015	+	448	104780299	pmbA	PSEEN1083	-	peptidase U62 tlde
984	 63.61	0	1140213..1140605	+	130	104780300	-	PSEEN1084	-	hypothetical protein
985	 63.54	0	1140598..1141974	+	458	104780301	fumC	PSEEN1085	-	fumarate hydratase
986	 64.72	0	1141991..1142452	+	153	104780302	-	PSEEN1086	-	hypothetical protein
987	 59.97	0	1142454..1143065	+	203	104780303	sodM	PSEEN1087	-	superoxide dismutase
988	 66.45	0	1143062..1143970	+	302	104780304	-	PSEEN1088	-	hypothetical protein
989	 65.57	0	1144102..1144374	-	90	104780305	-	PSEEN1089	-	phosphocarrier protein (HPr-like) NPr
990	 61.05	0	1144395..1145249	-	284	104780306	-	PSEEN1090	-	hypothetical protein
991	 63.87	0	1145252..1145716	-	154	104780307	ptsN	PSEEN1091	-	phosphotransferase system, nitrogen regulatory IIA protein
992	 54.37	-2	1145729..1146037	-	102	104780308	-	PSEEN1092	-	sigma N (sigma 54) modulator RpoX
993	 61.39	0	1146116..1147612	-	498	104780309	rpoN	PSEEN1093	-	RNA polymerase factor sigma-54
994	 63.22	0	1147785..1148510	-	241	104780310	-	PSEEN1094	-	ABC transporter, ATP-binding protein
995	 61.52	0	1148511..1149035	-	174	104780311	-	PSEEN1095	-	hypothetical protein
996	 58.99	-1	1149022..1149594	-	190	104780312	-	PSEEN1096	-	hypothetical protein
997	 64.95	0	1149603..1150127	-	174	104780313	-	PSEEN1097	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC
998	 65.44	0	1150128..1151102	-	324	104780314	-	PSEEN1098	-	hypothetical protein
999	 64.32	0	1151338..1152147	+	269	104780315	ttg2A	PSEEN1099	-	toluene tolerance ABC efflux transporter, ATP-binding protein
1000	 60.15	0	1152147..1152944	+	265	104780316	ttg2B	PSEEN1100	-	toluene tolerance ABC efflux transporter, permease
1001	 59.67	0	1152944..1153429	+	161	104780317	ttg2C	PSEEN1101	-	toluene tolerance ABC transporter, periplasmic substrate-binding protein
1002	 60.24	0	1153439..1154092	+	217	104780318	ttg2D	PSEEN1102	-	toluene tolerance protein Ttg2D
1003	 69.31	+1	1154089..1154391	+	100	104780319	ttg2E	PSEEN1103	-	toluene-tolerance protein TtgE
1004	 57.08	-1	1154510..1154749	+	79	104780320	ttgF	PSEEN1104	-	toluene-tolerance protein Ttg2F
1005	 64.38	0	1154773..1156038	+	421	104780321	murA	PSEEN1105	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1006	 63.68	0	1156131..1156766	+	211	104780322	hisG	PSEEN1106	-	ATP phosphoribosyltransferase catalytic subunit
1007	 65.31	0	1156893..1158215	+	440	104780323	hisD	PSEEN1107	-	histidinol dehydrogenase
1008	 62.46	0	1158218..1159264	+	348	104780324	hisC	PSEEN1108	-	histidinol-phosphate aminotransferase
1009	 62.85	0	1160235..1163270	-	1011	104780325	-	PSEEN1109	-	multidrug efflux protein
1010	 65.26	0	1163282..1164415	-	377	104780326	-	PSEEN1110	-	RND family multidrug transporter membrane fusion protein
1011	 49.44	-2	1164644..1164997	+	117	104780327	-	PSEEN1111	-	hypothetical protein
1012	 60.71	0	1165062..1165229	-	55	104780328	-	PSEEN1112	-	hypothetical protein
1013	 66.76	0	1166112..1167209	-	365	104780329	-	PSEEN1115	-	hypothetical protein
1014	 66.95	0	1167212..1168276	-	354	104780330	-	PSEEN1116	-	lipoprotein
1015	 68.42	0	1168295..1169716	-	473	104780331	-	PSEEN1117	-	hypothetical protein
1016	 65.99	0	1170000..1171328	-	442	104780332	-	PSEEN1119	-	hypothetical protein
1017	 64.13	0	1171486..1173537	-	683	104780333	-	PSEEN1120	-	diguanylate cyclase/phosphodiesterase
1018	 61.14	0	1173901..1174497	-	198	104780334	sodB	PSEEN1121	-	superoxide dismutase
1019	 69.50	+1	1174749..1175348	-	199	104780335	-	PSEEN1123	-	amino acid transporter LysE
1020	 67.23	0	1175473..1176363	+	296	104780336	-	PSEEN1124	-	chromosome replication initiation inhibitor protein
1021	 65.76	0	1176413..1177408	+	331	104780337	-	PSEEN1125	-	nucleoside-diphosphate-sugar epimerases
1022	 64.61	0	1177496..1178320	+	274	104780338	-	PSEEN1126	-	hypothetical protein
1023	 66.95	0	1178385..1179434	-	349	104780339	xenB	PSEEN1127	-	xenobiotic reductase B
1024	 63.37	0	1179481..1179783	-	100	104780340	-	PSEEN1128	-	ArsR family transcriptional regulator
1025	 66.50	0	1179937..1180530	+	197	104780341	-	PSEEN1129	-	hypothetical protein
1026	 61.73	0	1180906..1181148	+	80	104780342	-	PSEEN1130	-	hypothetical protein
1027	 61.85	0	1181273..1181542	+	89	104780343	-	PSEEN1131	-	hypothetical protein
1028	 46.56	-2	1181683..1181871	-	62	104780344	-	PSEEN1132	-	hypothetical protein
1029	 44.23	-2	1182276..1182743	-	155	104780345	-	PSEEN1134	-	hypothetical protein
1030	 63.57	0	1182750..1187402	-	1550	104780346	-	PSEEN1135	-	hypothetical protein
1031	 69.99	+1	1187693..1188475	-	260	104780347	-	PSEEN1136	-	acyltransferase
1032	 67.72	0	1188475..1189230	-	251	104780348	-	PSEEN1137	-	hypothetical protein
1033	 68.58	0	1189375..1190262	+	295	104780349	-	PSEEN1138	-	hypothetical protein
1034	 66.11	0	1190409..1191485	+	358	104780350	-	PSEEN1139	-	beta-lactamase
1035	 66.33	0	1191482..1191778	+	98	104780351	-	PSEEN1140	-	hypothetical protein
1036	 65.98	0	1191823..1192404	+	193	104780352	-	PSEEN1141	-	hypothetical protein
1037	 67.62	0	1192406..1193563	+	385	104780353	-	PSEEN1142	-	phospholipase
1038	 65.98	0	1193645..1194223	+	192	104780354	-	PSEEN1143	-	protease C56
1039	 65.14	0	1194394..1194984	+	196	104780355	-	PSEEN1144	-	hypothetical protein
1040	 65.29	0	1195074..1196597	-	507	104780356	-	PSEEN1145	-	fumarate hydratase, class I
1041	 66.67	0	1196885..1197805	+	306	104780357	-	PSEEN1146	-	hypothetical protein
1042	 66.05	0	1197899..1199353	-	484	104780358	pykA	PSEEN1147	-	pyruvate kinase
1043	 63.31	0	1199534..1199920	+	128	104780359	-	PSEEN1148	-	hypothetical protein
1044	 60.83	0	1200045..1200404	+	119	104780360	-	PSEEN1149	-	hypothetical protein
1045	 61.08	0	1200467..1201897	+	476	104780361	sbcB	PSEEN1150	-	exonuclease I
1046	 57.67	-1	1201970..1202347	-	125	104780362	mvaT	PSEEN1151	-	transcriptional regulator MvaT, P16 subunit
1047	 61.50	0	1202647..1203498	+	283	104780363	purU	PSEEN1152	-	formyltetrahydrofolate deformylase
1048	 65.62	0	1203514..1203705	+	63	104780364	-	PSEEN1153	-	hypothetical protein
1049	 62.83	0	1203853..1205727	-	624	104780365	-	PSEEN1154	-	methyl-accepting chemotaxis transducer
1050	 65.79	0	1205900..1207375	+	491	104780366	-	PSEEN1155	-	hypothetical protein
1051	 63.68	0	1207571..1209043	-	490	104780367	pitA	PSEEN1157	-	inorganic phosphate transporter
1052	 58.57	-1	1209344..1209553	-	69	104780368	-	PSEEN1158	-	hypothetical protein
1053	 50.00	-2	1209721..1209954	+	77	104780369	-	PSEEN1159	-	hypothetical protein
1054	 65.75	0	1210137..1211006	+	289	104780370	pcaR	PSEEN1160	-	regulatory protein for pca operon (activator)
1055	 65.18	0	1211430..1212776	+	448	104780371	pcaK	PSEEN1162	-	4-hydroxybenzoate transporter
1056	 65.51	0	1213039..1213899	+	286	104780372	catI	PSEEN1163	-	3-oxoadipate:succinyl-CoA transferase, subunit A
1057	 67.56	0	1213896..1214675	+	259	104780373	catJ	PSEEN1164	-	3-oxoadipate:succinyl-CoA transferase, subunit B
1058	 67.58	0	1214675..1215877	+	400	104780374	pcaF	PSEEN1165	-	beta-ketoadipyl CoA thiolase
1059	 62.64	0	1216100..1217389	+	429	104780375	pcaT	PSEEN1166	-	major facilitator superfamily alpha-ketoglutarate permease
1060	 69.11	+1	1217399..1218751	+	450	104780376	pcaB	PSEEN1167	-	3-carboxy-cis,cis-muconate cycloisomerase
1061	 65.15	0	1218764..1219555	+	263	104780377	pcaD	PSEEN1168	-	3-oxoadipate enol-lactonase II (Beta-ketoadipate enol-lactone hydrolase II)
1062	 63.10	0	1219566..1219958	+	130	104780378	pcaC	PSEEN1169	-	gamma-carboxymuconolactone decarboxylase (CMD)
1063	 67.54	0	1220058..1222469	-	803	104780379	-	PSEEN1170	-	glucose dehydrogenase Gcd
1064	 63.70	0	1222501..1223850	-	449	104780380	oprB	PSEEN1171	-	porin B precursor (Outer membrane protein D1) (glucose porin)
1065	 60.99	0	1224091..1229097	-	1668	104780381	-	PSEEN1172	-	hypothetical protein
1066	 67.44	0	1229408..1231465	-	685	104780382	-	PSEEN1173	-	TonB-dependent receptor
1067	 63.06	0	1231703..1231924	+	73	104780383	-	PSEEN1174	-	hypothetical protein
1068	 64.77	0	1231924..1232556	+	210	104780384	-	PSEEN1175	-	hypothetical protein
1069	 67.32	0	1232636..1233397	-	253	104780385	-	PSEEN1176	-	iron-chelator utilization protein
1070	 70.35	+1	1233394..1233936	-	180	104780386	-	PSEEN1177	-	PadR family transcriptional regulator
1071	 65.42	0	1234157..1237279	-	1040	104780387	-	PSEEN1178	-	membrane carboxypeptidase (penicillin-binding protein)
1072	 64.62	0	1237706..1239124	+	472	104780388	-	PSEEN1179	-	amino acid permease
1073	 65.25	0	1239288..1240907	-	539	104780389	-	PSEEN1180	-	ferredoxin-dependent glutamate synthase.
1074	 63.95	0	1241086..1241343	+	85	104780390	rpmE2	PSEEN1181	-	50S ribosomal protein L31 type B
1075	 67.77	0	1241427..1245701	-	1424	104780391	-	PSEEN1182	-	ATP-dependent DNA helicase Lhr
1076	 68.12	0	1245819..1246232	+	137	104780392	-	PSEEN1183	-	hydrolase, MutT/nudix family protein
64.12	MEAN

4.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.