IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
933	 30.75	-1	1040104..1040607	+	167	197284848	-	PMI0967	-	phage protein
934	 37.76	0	1041531..1042751	+	406	197284849	-	PMI0970	-	hypothetical protein
935	 37.42	0	1044035..1045159	+	374	197284850	-	PMI0971	-	lipase
936	 40.38	0	1045600..1045812	+	70	197284851	-	PMI0972	-	cold shock protein
937	 34.64	-1	1046145..1046603	+	152	197284852	-	PMI0973	-	heat shock protein
938	 30.52	-1	1047094..1047555	+	153	197284853	-	PMI0974	-	hypothetical protein
939	 39.73	0	1047678..1048052	-	124	197284854	-	PMI0975	-	hypothetical protein
940	 40.40	0	1048142..1048990	+	282	197284855	-	PMI0976	-	hypothetical protein
941	 35.86	0	1049231..1049428	+	65	197284856	-	PMI0977	-	lipoprotein
942	 35.54	0	1049452..1049994	-	180	197284857	-	PMI0978	-	hypothetical protein
943	 26.26	-2	1050159..1050257	-	32	197284858	-	PMI0979	-	hypothetical protein
944	 27.92	-2	1050248..1050487	-	79	197284859	-	PMI0980	-	hypothetical protein
945	 26.39	-2	1050691..1050834	-	47	197284860	-	PMI0981	-	hypothetical protein
946	 28.25	-2	1050834..1051148	-	104	197284861	-	PMI0982	-	transcriptional regulator
947	 20.69	-2	1051523..1051783	-	86	197284862	-	PMI0983	-	hypothetical protein
948	 35.34	0	1051792..1052439	-	215	197284863	ibrB	PMI0984	-	immunoglobulin-binding regulator
949	 39.28	0	1052446..1053672	-	408	197284864	ibrA	PMI0985	-	immunoglobulin-binding regulator
950	 28.96	-2	1054230..1054892	+	220	197284865	-	PMI0986	-	hypothetical protein
951	 36.41	0	1055455..1055811	+	118	197284866	-	PMI0987	-	hypothetical protein
952	 32.75	-1	1056014..1056184	+	56	197284867	-	PMI0988	-	hypothetical protein
953	 34.96	0	1056484..1057464	+	326	197284868	-	PMI0989	-	hypothetical protein
954	 35.59	0	1058350..1058571	+	73	197284869	-	PMI0991	-	hypothetical protein
955	 31.56	-1	1058997..1059278	+	93	197284870	-	PMI0992	-	hypothetical protein
956	 33.57	-1	1059647..1060060	+	137	197284871	-	PMI0993	-	lipoprotein
957	 35.80	0	1060088..1060330	+	80	197284872	-	PMI0994	-	lipoprotein
958	 38.15	0	1060393..1060953	-	186	197284873	-	PMI0995	-	ATP-binding protein
959	 30.81	-1	1061329..1061526	+	65	197284874	-	PMI0996	-	hypothetical protein
960	 37.19	0	1061544..1062320	+	258	197284875	map1	PMI0997	-	methionine aminopeptidase
961	 30.73	-1	1062555..1062938	+	127	197284876	-	PMI0998	-	phage antitermination protein
962	 38.43	0	1063081..1063944	+	287	197284877	-	PMI0999	-	lipase
963	 36.57	0	1064059..1064490	-	143	197284878	-	PMI1000	-	hypothetical protein
964	 42.93	0	1064609..1065025	-	138	197284879	-	PMI1001	-	IS element transposase
965	 47.31	+1	1065048..1066256	+	402	197284880	-	PMI1002	-	transposase
966	 38.21	0	1066360..1067097	+	245	197284881	-	PMI1003	-	hypothetical protein
967	 32.42	-1	1067184..1067732	-	182	197284882	-	PMI1004	-	adenylate cyclase
968	 36.62	0	1068184..1068579	-	131	197284883	-	PMI1005	-	hypothetical protein
969	 38.16	0	1068889..1069323	-	144	197284884	uspF	PMI1006	-	universal stress protein F
970	 35.12	0	1069964..1070467	+	167	197284885	ftnA	PMI1007	-	ferritin
971	 38.17	0	1071000..1071392	+	130	197284886	-	PMI1008	-	copper resistance protein
972	 39.11	0	1071392..1072291	+	299	197284887	-	PMI1009	-	copper resistance protein
973	 36.26	0	1072339..1072680	+	113	197284888	-	PMI1010	-	hypothetical protein
974	 32.92	-1	1072981..1073223	-	80	197284889	-	PMI1011	-	hypothetical protein
975	 41.01	0	1073436..1075754	-	772	197284890	-	PMI1012	-	hypothetical protein
976	 39.38	0	1075696..1076952	-	418	197284891	-	PMI1013	-	hypothetical protein
977	 37.35	0	1077230..1077727	+	165	197284892	-	PMI1014	-	hypothetical protein
978	 46.03	+1	1077823..1078515	+	230	197284893	proQ	PMI1015	-	ProP effector
979	 38.57	0	1078535..1080595	+	686	197284894	prc	PMI1016	-	tail-specific protease precursor (C-terminal-processing peptidase)
980	 38.21	0	1081500..1082852	+	450	197284895	-	PMI1017	-	hypothetical protein
981	 42.66	0	1083232..1084110	+	292	197284896	htpX	PMI1018	-	probable protease (heat shock protein)
982	 40.73	0	1084435..1085826	-	463	197284897	-	PMI1019	-	sodium:dicarboxylate symporter
983	 40.21	0	1086068..1086634	-	188	197284898	-	PMI1020	-	membrane-bound metal-dependent hydrolase
984	 41.85	0	1086892..1087560	-	222	197284899	-	PMI1021	-	phosphatase
985	 35.50	0	1087746..1088300	+	184	197284900	-	PMI1022	-	hypothetical protein
986	 40.55	0	1088394..1089266	-	290	197284901	-	PMI1023	-	kinase
987	 38.34	0	1089417..1090274	-	285	197284902	sitD	PMI1024	-	iron ABC transporter, membrane protein
988	 41.56	0	1090271..1091182	-	303	197284903	sitC	PMI1025	-	iron ABC transporter, membrane protein
989	 40.32	0	1091185..1092072	-	295	197284904	sitB	PMI1026	-	iron ABC transporter, ATP-binding protein
990	 39.49	0	1092069..1092977	-	302	197284905	sitA	PMI1027	-	iron ABC transporter, periplasmic substrate-binding protein
991	 40.74	0	1093368..1094069	+	233	197284906	-	PMI1028	-	membrane-bound lytic murein transglycosylase
992	 42.99	0	1094021..1094755	-	244	197284907	marC	PMI1029	-	multiple antibiotic resistance protein
993	 38.36	0	1094862..1095458	-	198	197284908	-	PMI1030	-	acetyltransferase
994	 44.63	+1	1095725..1096078	+	117	197284909	csaA	PMI1031	-	protein secretion chaperone
995	 39.30	0	1096170..1096856	+	228	197284910	-	PMI1032	-	transcriptional regulator
996	 35.75	0	1097083..1097994	+	303	197284911	-	PMI1033	-	fimbrial subunit
997	 40.80	0	1098276..1100204	+	642	197284912	thrS	PMI1034	-	threonyl-tRNA synthetase
998	 42.59	0	1100208..1100747	+	179	197284913	-	PMI1035	-	translation initiation factor IF-3
999	 42.42	0	1100842..1101039	+	65	197284914	rpmI	PMI1036	-	50S ribosomal subunit protein L35
1000	 46.22	+1	1101083..1101439	+	118	197284915	rplT	PMI1037	-	50S ribosomal protein L20
1001	 42.78	0	1101764..1102747	+	327	197284916	pheS	PMI1038	-	phenylalanyl-tRNA synthetase alpha chain
1002	 41.79	0	1102762..1105149	+	795	197284917	pheT	PMI1039	-	phenylalanyl-tRNA synthetase beta chain
1003	 45.12	+1	1105154..1105450	+	98	197284918	ihfA	PMI1040	-	integration host factor alpha-subunit
1004	 38.95	0	1105755..1106768	+	337	197284919	btuC	PMI1041	-	vitamin B12 import system permease protein
1005	 31.60	-1	1106770..1107519	+	249	197284920	btuD	PMI1042	-	vitamin B12 import ATP-binding protein
1006	 42.41	0	1107654..1108799	+	381	197284921	arnB	PMI1043	-	UDP-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferase
1007	 40.47	0	1108799..1109779	+	326	197284922	arnC	PMI1044	-	undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferase
1008	 39.49	0	1109779..1111761	+	660	197284923	arnA	PMI1045	-	bifunctional polymyxin resistance protein [includes: UDP-glucuronic acid decarboxylase and UDP-4-amino-4-deoxy-l-arabinose formyltransferase
1009	 41.50	0	1111761..1112654	+	297	197284924	-	PMI1046	-	polysaccharide deacetylase
1010	 40.31	0	1112662..1114323	+	553	197284925	arnT	PMI1047	-	undecaprenyl phosphate-alpha-4-amino-4-deoxy-l-arabinose arabinosyl transferase
1011	 37.13	0	1114323..1114664	+	113	197284926	-	PMI1048	-	hypothetical protein
1012	 38.81	0	1114661..1115062	+	133	197284927	-	PMI1049	-	hypothetical protein
1013	 39.43	0	1115210..1115701	+	163	197284928	nlpC	PMI1050	-	lipoprotein
1014	 40.00	0	1115779..1116798	+	339	197284929	lplA	PMI1051	-	lipoate-protein ligase A
1015	 34.42	-1	1116915..1117283	-	122	197284930	pqrA	PMI1052	-	AraC-family transcriptional regulator
1016	 40.81	0	1117864..1119066	-	400	197284931	-	PMI1053	-	FAD dependent oxidoreductase
1017	 40.48	0	1119084..1119797	-	237	197284932	-	PMI1054	-	GntR-family transcriptional regulator
1018	 40.60	0	1119798..1121765	-	655	197284933	-	PMI1055	-	TRAP-type C4-dicarboxylate transport system permease component
1019	 39.42	0	1121778..1122812	-	344	197284934	-	PMI1056	-	TRAP-type transport system substrate-binding protein
1020	 35.87	0	1123218..1123730	-	170	197284935	-	PMI1057	-	hypothetical protein
1021	 39.46	0	1123899..1125578	-	559	197284936	budB	PMI1058	-	acetolactate synthase, catabolic
1022	 36.68	0	1125643..1126479	-	278	197284937	budA	PMI1059	-	alpha-acetolactate decarboxylase
1023	 27.54	-2	1127237..1127512	+	91	197284938	-	PMI1060	-	fimbrial operon regulator
1024	 35.65	0	1127562..1128080	+	172	197284939	-	PMI1061	-	fimbrial protein
1025	 31.57	-1	1128290..1130665	+	791	197284940	-	PMI1062	-	Fimbrial usher protein
1026	 34.23	-1	1130658..1131326	+	222	197284941	-	PMI1063	-	fimbrial chaperone
1027	 36.40	0	1131337..1132347	+	336	197284942	-	PMI1064	-	fimbrial protein
1028	 37.18	0	1132348..1132893	+	181	197284943	-	PMI1065	-	fimbrial subunit
1029	 36.61	0	1132904..1133452	+	182	197284944	-	PMI1066	-	fimbrial protein
1030	 27.87	-2	1133454..1134002	+	182	197284945	-	PMI1067	-	fimbrial protein
1031	 23.88	-2	1134187..1134588	-	133	197284946	-	PMI1068	-	hypothetical protein
1032	 31.84	-1	1136286..1136822	-	178	197284947	-	PMI1070	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.