IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
888	 38.06	0	1001831..1002253	+	140	197284803	-	PMI0918	-	phage protein
889	 40.37	0	1002306..1002575	+	89	197284804	-	PMI0919	-	phage protein
890	 42.68	0	1002575..1003045	+	156	197284805	-	PMI0920	-	phage lysozyme
891	 42.42	0	1003188..1003649	+	153	197284806	-	PMI0921	-	phage endopeptidase (lysis protein)
892	 44.54	0	1004547..1004885	+	112	197284807	-	PMI0922	-	phage protein
893	 47.22	+1	1005004..1005471	+	155	197284808	-	PMI0923	-	phage terminase, small subunit
894	 46.71	+1	1005425..1007158	+	577	197284809	-	PMI0924	-	phage terminase, large subunit
895	 43.18	0	1007158..1008426	+	422	197284810	-	PMI0925	-	phage portal protein
896	 42.00	0	1008444..1009112	+	222	197284811	-	PMI0926	-	head maturation protease
897	 41.73	0	1009116..1010282	+	388	197284812	-	PMI0927	-	major capsid protein
898	 37.67	0	1010321..1010620	+	99	197284813	-	PMI0928	-	phage protein
899	 43.33	0	1010620..1010949	+	109	197284814	-	PMI0929	-	phage protein
900	 45.86	+1	1010942..1011412	+	156	197284815	-	PMI0930	-	phage protein
901	 45.03	+1	1011418..1011759	+	113	197284816	-	PMI0931	-	phage protein
902	 43.39	0	1011769..1012434	+	221	197284817	-	PMI0932	-	phage protein
903	 41.97	0	1012499..1012915	+	138	197284818	-	PMI0933	-	phage protein
904	 45.42	+1	1012918..1013190	+	90	197284819	-	PMI0934	-	phage protein
905	 41.15	0	1013215..1013406	-	63	197284820	-	PMI0935	-	phage membrane protein
906	 45.18	+1	1013509..1016808	+	1099	197284821	-	PMI0936	-	tail length tape measure protein
907	 45.56	+1	1016809..1017405	+	198	197284822	-	PMI0937	-	phage protein
908	 43.99	0	1017405..1017986	+	193	197284823	-	PMI0938	-	phage protein
909	 46.37	+1	1018043..1018441	+	132	197284824	-	PMI0939	-	phage protein
910	 43.93	0	1018441..1021470	+	1009	197284825	-	PMI0940	-	phage tail protein
911	 42.81	0	1021474..1022475	+	333	197284826	-	PMI0941	-	phage protein
912	 29.32	-2	1022674..1022922	+	82	197284827	-	PMI0943	-	colicin immunity protein
913	 44.00	0	1022971..1023120	+	49	197284828	-	PMI0944	-	phage protein
914	 23.86	-2	1023136..1023420	+	94	197284829	-	PMI0945	-	hypothetical protein
915	 24.91	-2	1023589..1023873	-	94	197284830	-	PMI0946	-	hypothetical protein
916	 38.93	0	1025468..1025860	+	130	197284831	-	PMI0949	-	hypothetical protein
917	 26.32	-2	1026081..1027733	+	550	197284832	-	PMI0950	-	hypothetical protein
918	 29.98	-1	1027739..1028602	+	287	197284833	-	PMI0951	-	hypothetical protein
919	 35.99	0	1029338..1030465	-	375	197284834	int	PMI0953	-	phage integrase
920	 37.04	0	1030446..1030688	-	80	197284835	-	PMI0954	-	excisionase
921	 34.41	-1	1030945..1031592	-	215	197284836	-	PMI0955	-	phage repressor
922	 35.10	0	1031923..1032996	+	357	197284837	-	PMI0956	-	phage protein
923	 36.84	0	1033009..1033407	+	132	197284838	-	PMI0957	-	probable phage antitermination protein
924	 30.65	-1	1033629..1033889	+	86	197284839	-	PMI0958	-	phage protein
925	 34.11	-1	1034045..1034302	+	85	197284840	-	PMI0959	-	phage protein
926	 33.70	-1	1034308..1034580	-	90	197284841	-	PMI0960	-	phage protein
927	 28.50	-2	1034887..1035093	+	68	197284842	-	PMI0961	-	phage protein
928	 38.42	0	1035396..1036418	+	340	197284843	-	PMI0962	-	phage DNA adenine-methylase
929	 31.92	-1	1036693..1037682	+	329	197284844	-	PMI0963	-	phage protein
930	 33.50	-1	1037697..1038299	+	200	197284845	-	PMI0964	-	phage protein
931	 42.15	0	1038660..1039124	+	154	197284846	-	PMI0965	-	phage endopeptidase (lysis protein)
932	 31.27	-1	1039168..1039749	-	193	197284847	-	PMI0966	-	hypothetical protein
933	 30.75	-1	1040104..1040607	+	167	197284848	-	PMI0967	-	phage protein
934	 37.76	0	1041531..1042751	+	406	197284849	-	PMI0970	-	hypothetical protein
935	 37.42	0	1044035..1045159	+	374	197284850	-	PMI0971	-	lipase
936	 40.38	0	1045600..1045812	+	70	197284851	-	PMI0972	-	cold shock protein
937	 34.64	-1	1046145..1046603	+	152	197284852	-	PMI0973	-	heat shock protein
938	 30.52	-1	1047094..1047555	+	153	197284853	-	PMI0974	-	hypothetical protein
939	 39.73	0	1047678..1048052	-	124	197284854	-	PMI0975	-	hypothetical protein
940	 40.40	0	1048142..1048990	+	282	197284855	-	PMI0976	-	hypothetical protein
941	 35.86	0	1049231..1049428	+	65	197284856	-	PMI0977	-	lipoprotein
942	 35.54	0	1049452..1049994	-	180	197284857	-	PMI0978	-	hypothetical protein
943	 26.26	-2	1050159..1050257	-	32	197284858	-	PMI0979	-	hypothetical protein
944	 27.92	-2	1050248..1050487	-	79	197284859	-	PMI0980	-	hypothetical protein
945	 26.39	-2	1050691..1050834	-	47	197284860	-	PMI0981	-	hypothetical protein
946	 28.25	-2	1050834..1051148	-	104	197284861	-	PMI0982	-	transcriptional regulator
947	 20.69	-2	1051523..1051783	-	86	197284862	-	PMI0983	-	hypothetical protein
948	 35.34	0	1051792..1052439	-	215	197284863	ibrB	PMI0984	-	immunoglobulin-binding regulator
949	 39.28	0	1052446..1053672	-	408	197284864	ibrA	PMI0985	-	immunoglobulin-binding regulator
950	 28.96	-2	1054230..1054892	+	220	197284865	-	PMI0986	-	hypothetical protein
951	 36.41	0	1055455..1055811	+	118	197284866	-	PMI0987	-	hypothetical protein
952	 32.75	-1	1056014..1056184	+	56	197284867	-	PMI0988	-	hypothetical protein
953	 34.96	0	1056484..1057464	+	326	197284868	-	PMI0989	-	hypothetical protein
954	 35.59	0	1058350..1058571	+	73	197284869	-	PMI0991	-	hypothetical protein
955	 31.56	-1	1058997..1059278	+	93	197284870	-	PMI0992	-	hypothetical protein
956	 33.57	-1	1059647..1060060	+	137	197284871	-	PMI0993	-	lipoprotein
957	 35.80	0	1060088..1060330	+	80	197284872	-	PMI0994	-	lipoprotein
958	 38.15	0	1060393..1060953	-	186	197284873	-	PMI0995	-	ATP-binding protein
959	 30.81	-1	1061329..1061526	+	65	197284874	-	PMI0996	-	hypothetical protein
960	 37.19	0	1061544..1062320	+	258	197284875	map1	PMI0997	-	methionine aminopeptidase
961	 30.73	-1	1062555..1062938	+	127	197284876	-	PMI0998	-	phage antitermination protein
962	 38.43	0	1063081..1063944	+	287	197284877	-	PMI0999	-	lipase
963	 36.57	0	1064059..1064490	-	143	197284878	-	PMI1000	-	hypothetical protein
964	 42.93	0	1064609..1065025	-	138	197284879	-	PMI1001	-	IS element transposase
965	 47.31	+1	1065048..1066256	+	402	197284880	-	PMI1002	-	transposase
966	 38.21	0	1066360..1067097	+	245	197284881	-	PMI1003	-	hypothetical protein
967	 32.42	-1	1067184..1067732	-	182	197284882	-	PMI1004	-	adenylate cyclase
968	 36.62	0	1068184..1068579	-	131	197284883	-	PMI1005	-	hypothetical protein
969	 38.16	0	1068889..1069323	-	144	197284884	uspF	PMI1006	-	universal stress protein F
970	 35.12	0	1069964..1070467	+	167	197284885	ftnA	PMI1007	-	ferritin
971	 38.17	0	1071000..1071392	+	130	197284886	-	PMI1008	-	copper resistance protein
972	 39.11	0	1071392..1072291	+	299	197284887	-	PMI1009	-	copper resistance protein
973	 36.26	0	1072339..1072680	+	113	197284888	-	PMI1010	-	hypothetical protein
974	 32.92	-1	1072981..1073223	-	80	197284889	-	PMI1011	-	hypothetical protein
975	 41.01	0	1073436..1075754	-	772	197284890	-	PMI1012	-	hypothetical protein
976	 39.38	0	1075696..1076952	-	418	197284891	-	PMI1013	-	hypothetical protein
977	 37.35	0	1077230..1077727	+	165	197284892	-	PMI1014	-	hypothetical protein
978	 46.03	+1	1077823..1078515	+	230	197284893	proQ	PMI1015	-	ProP effector
979	 38.57	0	1078535..1080595	+	686	197284894	prc	PMI1016	-	tail-specific protease precursor (C-terminal-processing peptidase)
980	 38.21	0	1081500..1082852	+	450	197284895	-	PMI1017	-	hypothetical protein
981	 42.66	0	1083232..1084110	+	292	197284896	htpX	PMI1018	-	probable protease (heat shock protein)
982	 40.73	0	1084435..1085826	-	463	197284897	-	PMI1019	-	sodium:dicarboxylate symporter
983	 40.21	0	1086068..1086634	-	188	197284898	-	PMI1020	-	membrane-bound metal-dependent hydrolase
984	 41.85	0	1086892..1087560	-	222	197284899	-	PMI1021	-	phosphatase
985	 35.50	0	1087746..1088300	+	184	197284900	-	PMI1022	-	hypothetical protein
986	 40.55	0	1088394..1089266	-	290	197284901	-	PMI1023	-	kinase
987	 38.34	0	1089417..1090274	-	285	197284902	sitD	PMI1024	-	iron ABC transporter, membrane protein
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.