IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
37	 41.85	0	59419..60615	+	398	197283952	hypB	PMI0037	-	hydrogenase nickel incorporation protein
38	 44.19	0	60606..60872	+	88	197283953	hybG	PMI0038	-	hydrogenase-2 maturation protein
39	 42.28	0	60856..61995	+	379	197283954	hypD	PMI0039	-	hydrogenase formation protein
40	 42.65	0	61992..63011	+	339	197283955	hypE	PMI0040	-	hydrogenase formation protein
41	 43.28	0	63205..64431	+	408	197283956	-	PMI0041	-	hypothetical protein
42	 40.33	0	64428..64670	+	80	197283957	-	PMI0042	-	SirA-like protein
43	 41.25	0	64753..65661	-	302	197283958	rdgC	PMI0043	-	recombination associated protein RdgC
44	 39.22	0	66979..68184	+	401	197283959	-	PMI0044	-	outer membrane protein
45	 40.13	0	68271..70226	+	651	197283960	cpdB	PMI0045	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
46	 35.91	0	70309..71085	+	258	197283961	-	PMI0046	-	lipoprotein
47	 41.71	0	71104..72726	+	540	197283962	-	PMI0047	-	secreted 5'-nucleotidase
48	 39.50	0	73039..73638	-	199	197283963	-	PMI0048	-	hypothetical protein
49	 38.14	0	73768..77493	-	1241	197283964	sbcC	PMI0049	-	exonuclease
50	 41.28	0	77490..78722	-	410	197283965	sbcD	PMI0050	-	exonuclease subunit D
51	 41.59	0	78944..79633	+	229	197283966	phoB	PMI0051	-	phosphate regulon transcriptional regulator (two-component response regulator)
52	 41.38	0	79657..80949	+	430	197283967	phoR	PMI0052	-	phosphate regulon sensor protein (two-component histidine kinase)
53	 40.36	0	81447..82784	+	445	197283968	brnQ	PMI0053	-	branched-chain amino acid transport system II carrier protein
54	 35.66	0	82844..84130	-	428	197283969	-	PMI0054	-	hypothetical protein
55	 36.73	0	84120..84413	-	97	197283970	-	PMI0055	-	hypothetical protein
56	 37.54	0	84801..85727	-	308	197283971	-	PMI0056	-	hypothetical protein
57	 37.85	0	85724..86674	-	316	197283972	-	PMI0057	-	hypothetical protein
58	 36.54	0	87603..88538	-	311	197283973	-	PMI0060	-	hypothetical protein
59	 37.33	0	88535..89485	-	316	197283974	-	PMI0061	-	hypothetical protein
60	 37.43	0	89507..90433	-	308	197283975	-	PMI0062	-	hypothetical protein
61	 34.52	-1	90455..91381	-	308	197283976	-	PMI0063	-	hypothetical protein
62	 25.47	-2	92040..92522	+	160	197283977	-	PMI0064	-	hypothetical protein
63	 40.10	0	92694..93668	-	324	197283978	-	PMI0065	-	subunit of oxidoreductase
64	 39.72	0	93676..94473	-	265	197283979	-	PMI0066	-	oxidoreductase, cytochrome b subunit
65	 43.30	0	94470..95141	-	223	197283980	-	PMI0067	-	oxidoreductase, Fe-S subunit
66	 40.03	0	95208..95924	-	238	197283981	-	PMI0068	-	subunit of oxidoreductase
67	 43.08	0	95940..98042	-	700	197283982	-	PMI0069	-	aldehyde ferredoxin oxidoreductase
68	 43.81	0	98095..98724	-	209	197283983	-	PMI0070	-	oxidoreductase, Fe-S subunit
69	 20.16	-2	99189..99317	-	42	197283984	-	PMI0071	-	hypothetical protein
70	 42.92	0	99339..101111	-	590	197283985	ggt	PMI0072	-	gamma-glutamyltranspeptidase
71	 43.62	0	101402..102004	-	200	197283986	ahpC	PMI0073	-	alkyl hydroperoxide reductase
72	 40.82	0	102415..103002	-	195	197283987	-	PMI0074	-	hypothetical protein
73	 42.27	0	103110..104183	+	357	197283988	queA	PMI0075	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
74	 40.51	0	104365..105507	+	380	197283989	tgt	PMI0076	-	queuine tRNA-ribosyltransferase
75	 37.20	0	105594..105929	+	111	197283990	yajC	PMI0077	-	preprotein translocase subunit
76	 42.86	0	105962..107809	+	615	197283991	secD	PMI0078	-	protein-export membrane protein SecD
77	 40.73	0	107775..108788	+	337	197283992	secF	PMI0079	-	protein-export membrane protein SecF
78	 41.11	0	108907..109356	+	149	197283993	ribX	PMI0080	-	ATP-binding regulatory protein
79	 42.06	0	109413..110570	+	385	197283994	ribD	PMI0081	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase
80	 43.31	0	110783..111253	+	156	197283995	ribH	PMI0082	-	6,7-dimethyl-8-ribityllumazine synthase
81	 42.75	0	111282..111695	+	137	197283996	nusB	PMI0083	-	N utilization substance protein B
82	 41.49	0	111789..112769	+	326	197283997	thiL	PMI0084	-	thiamine-monophosphate kinase
83	 38.10	0	112855..113190	-	111	197283998	phnA	PMI0085	-	hypothetical protein
84	 37.04	0	114037..114279	-	80	197283999	-	PMI0087	-	plasmid-associated protein
85	 42.46	0	114382..115389	-	335	197284000	rbsR	PMI0088	-	ribose operon repressor (LacI-family transcriptional regulator)
86	 42.61	0	115394..116320	-	308	197284001	rbsK	PMI0089	-	ribokinase
87	 41.75	0	116397..117287	-	296	197284002	rbsB	PMI0090	-	D-ribose ABC transporter, substrate-binding periplasmic protein
88	 41.93	0	117327..118292	-	321	197284003	rbsC	PMI0091	-	ribose ABC transporter, permease protein
89	 39.10	0	118294..119802	-	502	197284004	rbsA	PMI0092	-	ribose ABC transporter, ATP-binding protein
90	 36.90	0	119810..120229	-	139	197284005	rbsD	PMI0093	-	high affinity ribose transport protein
91	 43.63	0	120570..122444	-	624	197284006	dxs	PMI0094	-	1-deoxy-D-xylulose-5-phosphate synthase
92	 44.48	0	122511..123434	-	307	197284007	ispA	PMI0095	-	geranyltranstransferase
93	 37.86	0	123435..123743	-	102	197284008	xseB	PMI0096	-	exodeoxyribonuclease VII small subunit
94	 38.15	0	123898..125349	+	483	197284009	thiI	PMI0097	-	thiamine biosynthesis protein
95	 22.22	-2	125729..125836	-	35	197284010	-	PMI0099	-	hypothetical protein
96	 28.18	-2	125842..126423	-	193	197284011	-	PMI0100	-	hypothetical protein
97	 40.78	0	126594..127211	-	205	197284012	thiJ	PMI0101	-	DJ-1/PfpI family protein
98	 38.85	0	127180..128103	-	307	197284013	panE	PMI0102	-	2-dehydropantoate 2-reductase
99	 37.60	0	128357..128848	+	163	197284014	-	PMI0103	-	hypothetical protein
100	 38.58	0	128911..130281	-	456	197284015	-	PMI0104	-	MFS-family transporter
101	 40.34	0	130455..131339	-	294	197284016	cyoE	PMI0105	-	protoheme IX farnesyltransferase
102	 43.24	0	131351..131683	-	110	197284017	cyoD	PMI0105A	-	cytochrome O ubiquinol oxidase protein
103	 42.97	0	131683..132294	-	203	197284018	cyoC	PMI0106	-	cytochrome O ubiquinol oxidase subunit III
104	 44.38	0	132294..134276	-	660	197284019	cyoB	PMI0107	-	cytochrome O ubiquinol oxidase subunit I
105	 42.17	0	134281..135231	-	316	197284020	cyoA	PMI0108	-	cytochrome O ubiquinol oxidase subunit II
106	 37.27	0	135728..136489	-	253	197284021	-	PMI0109	-	hypothetical protein
107	 40.83	0	136845..138218	+	457	197284022	dbpA	PMI0110	-	ATP-independent RNA helicase
108	 41.22	0	138318..139838	-	506	197284023	ampG	PMI0111	-	Beta-lactamase induction signal transducer (MFS-family transporter)
109	 40.93	0	139896..140474	-	192	197284024	-	PMI0112	-	lipoprotein
110	 40.00	0	140805..141119	+	104	197284025	bolA	PMI0113	-	BolA protein
111	 41.00	0	141442..142746	+	434	197284026	tig	PMI0114	-	Trigger factor
112	 39.74	0	143003..143626	+	207	197284027	clpP	PMI0115	-	ATP-dependent Clp protease proteolytic subunit
113	 40.33	0	143771..145042	+	423	197284028	clpX	PMI0116	-	ATP-dependent Clp protease ATP-binding subunit
114	 42.17	0	145300..147654	+	784	197284029	lon	PMI0117	-	ATP-dependent protease La
115	 44.57	0	147876..148151	+	91	197284030	hupB	PMI0118	-	DNA-binding protein HU-beta
116	 39.08	0	148619..150496	+	625	197284031	ppiD	PMI0119	-	peptidyl-prolyl cis-trans isomerase D
117	 35.73	0	150751..151125	+	124	197284032	-	PMI0120	-	competence protein
118	 35.54	0	151338..151745	+	135	197284033	-	PMI0121	-	hypothetical protein
119	 38.77	0	152136..152834	-	232	197284034	-	PMI0122	-	hypothetical protein
120	 38.53	0	152992..153453	+	153	197284035	-	PMI0123	-	AsnC-family transcriptional regulator
121	 41.07	0	153510..155255	+	581	197284036	mdlA	PMI0124	-	efflux ABC transporter, ATP-binding membrane protein
122	 40.44	0	155242..157029	+	595	197284037	mdlB	PMI0125	-	efflux ABC transporter, ATP-binding membrane protein
123	 39.23	0	157248..157586	+	112	197284038	glnK	PMI0126	-	nitrogen regulatory protein P-II
124	 41.03	0	157599..158897	+	432	197284039	amtB	PMI0127	-	probable ammonium transporter
125	 39.84	0	158941..159816	-	291	197284040	tesB	PMI0128	-	acyl-CoA thioesterase
126	 35.78	0	160608..160811	-	67	197284041	-	PMI0129	-	regulatory protein
127	 33.61	-1	160857..161219	-	120	197284042	-	PMI0130	-	hypothetical protein
128	 43.27	0	161877..165035	-	1052	197284043	acrB	PMI0131	-	inner membrane rnd family protein acrb
129	 42.07	0	165050..166240	-	396	197284044	acrA	PMI0132	-	multidrug efflux protein
130	 35.81	0	166366..167010	+	214	197284045	acrR	PMI0133	-	acrAB operon repressor (tetR-family transcriptional regulator)
131	 39.55	0	167039..167392	+	117	197284046	-	PMI0134	-	cytoplasmic sulphur reductase
132	 36.75	0	167517..170945	+	1142	197284047	kefA	PMI0135	-	potassium efflux protein
133	 35.90	0	170958..171113	-	51	197284048	-	PMI0136	-	hypothetical protein
134	 38.86	0	171125..171667	-	180	197284049	priC	PMI0137	-	primosomal replication protein N''
135	 40.76	0	171805..172356	+	183	197284050	apt	PMI0138	-	adenine phosphoribosyltransferase
136	 43.85	0	172584..174560	+	658	197284051	dnaX	PMI0139	-	DNA polymerase III Tau subunit (contains DNA polymerase III Gamma subunit)
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.