IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
609	 37.72	0	680327..681694	+	455	197284524	-	PMI0627	-	lyase
610	 40.58	0	681765..683144	+	459	197284525	-	PMI0628	-	MmgE/Prp family protein
611	 39.93	0	683265..684173	-	302	197284526	-	PMI0629	-	LysR-family transcriptional regulator
612	 39.78	0	684437..686545	+	702	197284527	dinG	PMI0630	-	ATP-dependent helicase
613	 39.05	0	686606..687112	-	168	197284528	dps	PMI0631	-	DNA protection during starvation protein
614	 40.40	0	687390..688280	-	296	197284529	-	PMI0632	-	hypothetical protein
615	 37.48	0	688629..689207	+	192	197284530	-	PMI0633	-	lysine decarboxylase
616	 37.63	0	689217..689681	+	154	197284531	-	PMI0634	-	acetyltransferase
617	 42.36	0	689745..691505	-	586	197284532	-	PMI0635	-	amidohydrolase
618	 41.15	0	691702..692469	-	255	197284533	moeB	PMI0636	-	molybdopterin biosynthesis protein
619	 42.19	0	692475..693716	-	413	197284534	moeA	PMI0637	-	molybdopterin biosynthesis protein
620	 43.68	0	693932..695101	+	389	197284535	-	PMI0638	-	MFS-family transporter
621	 40.27	0	695247..695909	+	220	197284536	folE	PMI0639	-	GTP cyclohydrolase
622	 38.11	0	695919..697070	+	383	197284537	-	PMI0640	-	hypothetical protein
623	 40.50	0	697067..697792	-	241	197284538	sanA	PMI0641	-	transport protein
624	 42.64	0	697927..699624	-	565	197284539	sfcA	PMI0642	-	NAD-dependent malic enzyme
625	 43.16	0	699839..700723	-	294	197284540	cdd	PMI0643	-	cytidine deaminase
626	 39.74	0	700947..701648	-	233	197284541	-	PMI0644	-	hypothetical protein
627	 39.10	0	701642..702109	-	155	197284542	-	PMI0645	-	hypothetical protein
628	 41.57	0	702245..704272	-	675	197284543	metG	PMI0646	-	methionyl-tRNA synthetase
629	 43.31	0	704477..705589	+	370	197284544	-	PMI0648	-	ATP-binding protein
630	 38.16	0	705802..706443	+	213	197284545	udk	PMI0649	-	Uridine kinase
631	 45.88	+1	706520..707101	+	193	197284546	dcd	PMI0650	-	deoxycytidine triphosphate deaminase
632	 37.84	0	707146..709077	+	643	197284547	asmA	PMI0651	-	outer membrane assembly protein
633	 42.00	0	709506..710867	+	453	197284548	dcuC	PMI0652	-	anaerobic C4-dicarboxylate transporter
634	 40.10	0	711028..712608	-	526	197284549	-	PMI0653	-	probable transporter
635	 39.73	0	713406..714812	+	468	197284550	gnd	PMI0655	-	6-phosphogluconate dehydrogenase, decarboxylating
636	 40.92	0	714932..715432	-	166	197284551	-	PMI0656	-	hypothetical protein
637	 40.71	0	715743..716894	+	383	197284552	-	PMI0657	-	probable alcohol dehydrogenase
638	 39.16	0	717037..717654	-	205	197284553	hisI	PMI0658	-	histidine biosynthesis bifunctional protein [includes: phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase]
639	 43.41	0	717654..718427	-	257	197284554	hisF	PMI0659	-	imidazole glycerol phosphate synthase subunit HisF
640	 44.17	0	718409..719146	-	245	197284555	hisA	PMI0660	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase
641	 42.30	0	719153..719743	-	196	197284556	hisH	PMI0661	-	imidazole glycerol phosphate synthase subunit
642	 41.67	0	719743..720810	-	355	197284557	hisB	PMI0662	-	histidine biosynthesis bifunctional protein [includes: histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase]
643	 42.38	0	720858..721940	-	360	197284558	hisC	PMI0663	-	histidinol-phosphate aminotransferase
644	 45.48	+1	721943..723259	-	438	197284559	hisD	PMI0664	-	histidinol dehydrogenase
645	 40.56	0	723266..724165	-	299	197284560	hisG	PMI0665	-	ATP phosphoribosyltransferase
646	 40.14	0	724159..724305	-	48	197284561	-	PMI0666	-	hypothetical protein
647	 42.34	0	724671..725492	+	273	197284562	-	PMI0667	-	hypothetical protein
648	 39.13	0	725489..726109	-	206	197284563	-	PMI0668	-	glutathione S-transferase
649	 41.65	0	726267..727469	+	400	197284564	dacC	PMI0669	-	penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
650	 40.45	0	727559..729229	-	556	197284565	fhs	PMI0670	-	formate--tetrahydrofolate ligase
651	 43.74	0	729577..730941	-	454	197284566	sdaB	PMI0671	-	L-serine dehydratase
652	 39.73	0	731056..732384	-	442	197284567	sdaC	PMI0672	-	serine transporter
653	 42.16	0	733303..733914	-	203	197284568	-	PMI0673	-	membrane-associated phosphatase
654	 38.97	0	734152..734577	+	141	197284569	-	PMI0674	-	hypothetical protein
655	 37.88	0	734844..735107	-	87	197284570	grxA	PMI0675	-	glutaredoxin
656	 34.98	0	735278..735580	+	100	197284571	-	PMI0676	-	hypothetical protein
657	 35.52	0	735751..736254	+	167	197284572	-	PMI0677	-	hypothetical protein
658	 41.18	0	736283..737416	+	377	197284573	rumB	PMI0678	-	23S rRNA (uracil-5-)-methyltransferase
659	 39.01	0	737559..738227	-	222	197284574	artM	PMI0679	-	arginine ABC transporter, permease protein
660	 42.55	0	738227..738931	-	234	197284575	artQ	PMI0680	-	arginine ABC transporter, permease protein
661	 36.46	0	738962..739696	-	244	197284576	artI	PMI0681	-	arginine ABC transporter, substrate-binding protein
662	 39.64	0	739711..740439	-	242	197284577	artP	PMI0682	-	arginine ABC transporter, ATP-binding protein
663	 43.85	0	740546..742009	-	487	197284578	-	PMI0683	-	hypothetical protein
664	 40.64	0	742061..742963	-	300	197284579	-	PMI0684	-	hypothetical protein
665	 39.67	0	743309..744982	+	557	197284580	-	PMI0685	-	hypothetical protein
666	 38.65	0	745124..746233	+	369	197284581	macA	PMI0686	-	macrolide-specific efflux protein
667	 42.44	0	746233..748176	+	647	197284582	macB	PMI0687	-	macrolide-specific ABC-type efflux carrier
668	 40.48	0	748339..748548	-	69	197284583	cspD	PMI0688	-	cold shock-like protein
669	 39.05	0	748838..749152	+	104	197284584	clpS	PMI0689	-	ATP-dependent Clp protease adaptor protein
670	 40.04	0	749183..751477	+	764	197284585	clpA	PMI0690	-	ATP-dependent Clp protease ATP-binding subunit
671	 45.21	+1	751597..751815	-	72	197284586	infA	PMI0691	-	translation initiation factor IF-1
672	 44.44	0	752135..752827	-	230	197284587	aat	PMI0692	-	leucyl/phenylalanyl-tRNA-protein transferase
673	 44.58	0	752829..754580	-	583	197284588	cydC	PMI0693	-	ABC transporter, ATP-binding and permease protein
674	 43.28	0	754583..756352	-	589	197284589	cydD	PMI0694	-	ABC transporter, ATP-binding and permease protein
675	 42.40	0	756494..757453	-	319	197284590	trxB	PMI0695	-	thioredoxin reductase
676	 39.19	0	757996..758490	+	164	197284591	lrp	PMI0696	-	leucine-responsive regulator
677	 44.66	+1	758618..762421	+	1267	197284592	ftsK	PMI0697	-	cell division protein (DNA translocase)
678	 43.07	0	762534..763139	+	201	197284593	lolA	PMI0698	-	outer-membrane lipoprotein carrier protein
679	 44.30	0	763150..764499	+	449	197284594	-	PMI0699	-	ATPase
680	 43.18	0	764633..765922	+	429	197284595	serS	PMI0700	-	seryl-tRNA synthetase
681	 29.13	-2	766102..766434	-	110	197284596	-	PMI0701	-	hypothetical protein
682	 40.57	0	766835..767884	+	349	197284597	allD	PMI0702	-	ureidoglycolate dehydrogenase
683	 36.98	0	767957..768862	-	301	197284598	-	PMI0703	-	hypothetical protein
684	 40.49	0	769220..769960	-	246	197284599	pflA	PMI0704	-	pyruvate formate-lyase activating enzyme
685	 41.26	0	770068..772350	-	760	197284600	pflB	PMI0705	-	formate acetyltransferase
686	 38.48	0	772405..773259	-	284	197284601	focA	PMI0706	-	probable formate transporter
687	 39.19	0	773930..775687	-	585	197284602	-	PMI0707	-	hypothetical protein
688	 39.98	0	775915..776952	+	345	197284603	ansB	PMI0708	-	L-asparaginase II precursor
689	 29.79	-2	777027..778295	-	422	197284604	-	PMI0709	-	haemagglutinin
690	 40.04	0	778432..779862	-	476	197284605	-	PMI0710	-	MFS-family transporter
691	 41.41	0	779999..781087	+	362	197284606	serC	PMI0711	-	phosphoserine aminotransferase
692	 42.27	0	781284..782570	+	428	197284607	aroA	PMI0713	-	3-phosphoshikimate 1-carboxyvinyltransferase
693	 42.33	0	782859..783536	+	225	197284608	cmk	PMI0714	-	cytidylate kinase
694	 43.97	0	783718..785391	+	557	197284609	rpsA	PMI0715	-	30S ribosomal protein S1
695	 45.14	+1	785456..785743	+	95	197284610	ihfB	PMI0716	-	integration host factor beta-subunit
696	 37.47	0	786165..788534	+	789	197284611	-	PMI0717	-	hypothetical protein
697	 40.78	0	788571..790316	+	581	197284612	msbA	PMI0718	-	lipid A export ATP-binding/permease protein
698	 43.51	0	790313..791314	+	333	197284613	lpxK	PMI0719	-	tetraacyldisaccharide 4'-kinase
699	 35.65	0	791810..792025	+	71	197284614	-	PMI0720	-	cold shock protein
700	 37.78	0	792440..792619	+	59	197284615	-	PMI0721	-	hypothetical protein
701	 44.62	+1	792624..793385	+	253	197284616	kdsB	PMI0722	-	3-deoxy-manno-octulosonate cytidylyltransferase
702	 41.16	0	793509..794339	-	276	197284617	-	PMI0723	-	hypothetical protein
703	 39.92	0	794719..795492	+	257	197284618	smtA	PMI0724	-	S-adenosylmethionine-dependent methyltransferase
704	 41.42	0	795502..796824	+	440	197284619	mukF	PMI0725	-	chromosome partition protein
705	 41.70	0	796784..797536	+	250	197284620	mukE	PMI0726	-	chromosome partition protein
706	 41.61	0	797533..801990	+	1485	197284621	mukB	PMI0727	-	chromosome partition protein
707	 36.39	0	802273..802926	-	217	197284622	cat	PMI0728	-	chloramphenicol acetyltransferase
708	 40.62	0	803332..804045	+	237	197284623	aphA	PMI0729	-	class B acid phosphatase precursor
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.