IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
584	 44.13	0	653693..654970	-	425	197284499	bioA	PMI0602	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
585	 41.71	0	655074..656111	+	345	197284500	bioB	PMI0603	-	biotin synthase
586	 41.92	0	656111..657274	+	387	197284501	bioF	PMI0604	-	8-amino-7-oxononanoate synthase
587	 41.41	0	657249..658016	+	255	197284502	bioC	PMI0605	-	biotin synthesis protein BioC
588	 39.59	0	658009..658695	+	228	197284503	bioD	PMI0606	-	dethiobiotin synthetase
589	 41.54	0	659167..661176	+	669	197284504	uvrB	PMI0607	-	excinuclease ABC subunit B
590	 37.42	0	661372..662325	+	317	197284505	-	PMI0608	-	hypothetical protein
591	 42.09	0	662443..663378	-	311	197284506	-	PMI0609	-	hypothetical protein
592	 41.59	0	663808..664788	+	326	197284507	moaA	PMI0610	-	molybdenum cofactor biosynthesis protein A
593	 43.96	0	664830..665309	+	159	197284508	moaC	PMI0611	-	molybdenum cofactor biosynthesis protein C
594	 41.06	0	665306..665551	+	81	197284509	moaD	PMI0612	-	molybdenum cofactor biosynthesis protein D
595	 41.99	0	665553..666014	+	153	197284510	moaE	PMI0613	-	molybdenum cofactor biosynthesis protein E
596	 37.97	0	666209..666919	+	236	197284511	-	PMI0614	-	hypothetical protein
597	 36.94	0	667062..668171	-	369	197284512	-	PMI0615	-	ABC transporter, permease protein
598	 41.23	0	668187..669338	-	383	197284513	-	PMI0616	-	ABC transporter, permease protein
599	 41.98	0	669331..671100	-	589	197284514	-	PMI0617	-	ABC transporter, ATP-binding protein
600	 41.03	0	671121..672107	-	328	197284515	-	PMI0618	-	HlyD-family secretion protein
601	 38.77	0	672125..672823	-	232	197284516	-	PMI0619	-	TetR-family transcriptional regulator
602	 40.70	0	673134..674531	+	465	197284517	rhlE	PMI0620	-	ATP-dependent RNA helicase
603	 41.80	0	674541..675473	+	310	197284518	dusC	PMI0621	-	tRNA-dihydrouridine synthase C
604	 38.96	0	675679..675927	+	82	197284519	-	PMI0622	-	transglycosylase associated protein
605	 43.26	0	676011..676856	-	281	197284520	sseA	PMI0623	-	3-mercaptopyruvate sulfurtransferase
606	 45.16	+1	676869..677054	-	61	197284521	-	PMI0624	-	hypothetical protein
607	 37.94	0	677340..678707	-	455	197284522	dcuD	PMI0625	-	C4-dicarboxylate transporter
608	 40.31	0	678743..679918	-	391	197284523	metC	PMI0626	-	cystathionine beta-lyase
609	 37.72	0	680327..681694	+	455	197284524	-	PMI0627	-	lyase
610	 40.58	0	681765..683144	+	459	197284525	-	PMI0628	-	MmgE/Prp family protein
611	 39.93	0	683265..684173	-	302	197284526	-	PMI0629	-	LysR-family transcriptional regulator
612	 39.78	0	684437..686545	+	702	197284527	dinG	PMI0630	-	ATP-dependent helicase
613	 39.05	0	686606..687112	-	168	197284528	dps	PMI0631	-	DNA protection during starvation protein
614	 40.40	0	687390..688280	-	296	197284529	-	PMI0632	-	hypothetical protein
615	 37.48	0	688629..689207	+	192	197284530	-	PMI0633	-	lysine decarboxylase
616	 37.63	0	689217..689681	+	154	197284531	-	PMI0634	-	acetyltransferase
617	 42.36	0	689745..691505	-	586	197284532	-	PMI0635	-	amidohydrolase
618	 41.15	0	691702..692469	-	255	197284533	moeB	PMI0636	-	molybdopterin biosynthesis protein
619	 42.19	0	692475..693716	-	413	197284534	moeA	PMI0637	-	molybdopterin biosynthesis protein
620	 43.68	0	693932..695101	+	389	197284535	-	PMI0638	-	MFS-family transporter
621	 40.27	0	695247..695909	+	220	197284536	folE	PMI0639	-	GTP cyclohydrolase
622	 38.11	0	695919..697070	+	383	197284537	-	PMI0640	-	hypothetical protein
623	 40.50	0	697067..697792	-	241	197284538	sanA	PMI0641	-	transport protein
624	 42.64	0	697927..699624	-	565	197284539	sfcA	PMI0642	-	NAD-dependent malic enzyme
625	 43.16	0	699839..700723	-	294	197284540	cdd	PMI0643	-	cytidine deaminase
626	 39.74	0	700947..701648	-	233	197284541	-	PMI0644	-	hypothetical protein
627	 39.10	0	701642..702109	-	155	197284542	-	PMI0645	-	hypothetical protein
628	 41.57	0	702245..704272	-	675	197284543	metG	PMI0646	-	methionyl-tRNA synthetase
629	 43.31	0	704477..705589	+	370	197284544	-	PMI0648	-	ATP-binding protein
630	 38.16	0	705802..706443	+	213	197284545	udk	PMI0649	-	Uridine kinase
631	 45.88	+1	706520..707101	+	193	197284546	dcd	PMI0650	-	deoxycytidine triphosphate deaminase
632	 37.84	0	707146..709077	+	643	197284547	asmA	PMI0651	-	outer membrane assembly protein
633	 42.00	0	709506..710867	+	453	197284548	dcuC	PMI0652	-	anaerobic C4-dicarboxylate transporter
634	 40.10	0	711028..712608	-	526	197284549	-	PMI0653	-	probable transporter
635	 39.73	0	713406..714812	+	468	197284550	gnd	PMI0655	-	6-phosphogluconate dehydrogenase, decarboxylating
636	 40.92	0	714932..715432	-	166	197284551	-	PMI0656	-	hypothetical protein
637	 40.71	0	715743..716894	+	383	197284552	-	PMI0657	-	probable alcohol dehydrogenase
638	 39.16	0	717037..717654	-	205	197284553	hisI	PMI0658	-	histidine biosynthesis bifunctional protein [includes: phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase]
639	 43.41	0	717654..718427	-	257	197284554	hisF	PMI0659	-	imidazole glycerol phosphate synthase subunit HisF
640	 44.17	0	718409..719146	-	245	197284555	hisA	PMI0660	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase
641	 42.30	0	719153..719743	-	196	197284556	hisH	PMI0661	-	imidazole glycerol phosphate synthase subunit
642	 41.67	0	719743..720810	-	355	197284557	hisB	PMI0662	-	histidine biosynthesis bifunctional protein [includes: histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase]
643	 42.38	0	720858..721940	-	360	197284558	hisC	PMI0663	-	histidinol-phosphate aminotransferase
644	 45.48	+1	721943..723259	-	438	197284559	hisD	PMI0664	-	histidinol dehydrogenase
645	 40.56	0	723266..724165	-	299	197284560	hisG	PMI0665	-	ATP phosphoribosyltransferase
646	 40.14	0	724159..724305	-	48	197284561	-	PMI0666	-	hypothetical protein
647	 42.34	0	724671..725492	+	273	197284562	-	PMI0667	-	hypothetical protein
648	 39.13	0	725489..726109	-	206	197284563	-	PMI0668	-	glutathione S-transferase
649	 41.65	0	726267..727469	+	400	197284564	dacC	PMI0669	-	penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
650	 40.45	0	727559..729229	-	556	197284565	fhs	PMI0670	-	formate--tetrahydrofolate ligase
651	 43.74	0	729577..730941	-	454	197284566	sdaB	PMI0671	-	L-serine dehydratase
652	 39.73	0	731056..732384	-	442	197284567	sdaC	PMI0672	-	serine transporter
653	 42.16	0	733303..733914	-	203	197284568	-	PMI0673	-	membrane-associated phosphatase
654	 38.97	0	734152..734577	+	141	197284569	-	PMI0674	-	hypothetical protein
655	 37.88	0	734844..735107	-	87	197284570	grxA	PMI0675	-	glutaredoxin
656	 34.98	0	735278..735580	+	100	197284571	-	PMI0676	-	hypothetical protein
657	 35.52	0	735751..736254	+	167	197284572	-	PMI0677	-	hypothetical protein
658	 41.18	0	736283..737416	+	377	197284573	rumB	PMI0678	-	23S rRNA (uracil-5-)-methyltransferase
659	 39.01	0	737559..738227	-	222	197284574	artM	PMI0679	-	arginine ABC transporter, permease protein
660	 42.55	0	738227..738931	-	234	197284575	artQ	PMI0680	-	arginine ABC transporter, permease protein
661	 36.46	0	738962..739696	-	244	197284576	artI	PMI0681	-	arginine ABC transporter, substrate-binding protein
662	 39.64	0	739711..740439	-	242	197284577	artP	PMI0682	-	arginine ABC transporter, ATP-binding protein
663	 43.85	0	740546..742009	-	487	197284578	-	PMI0683	-	hypothetical protein
664	 40.64	0	742061..742963	-	300	197284579	-	PMI0684	-	hypothetical protein
665	 39.67	0	743309..744982	+	557	197284580	-	PMI0685	-	hypothetical protein
666	 38.65	0	745124..746233	+	369	197284581	macA	PMI0686	-	macrolide-specific efflux protein
667	 42.44	0	746233..748176	+	647	197284582	macB	PMI0687	-	macrolide-specific ABC-type efflux carrier
668	 40.48	0	748339..748548	-	69	197284583	cspD	PMI0688	-	cold shock-like protein
669	 39.05	0	748838..749152	+	104	197284584	clpS	PMI0689	-	ATP-dependent Clp protease adaptor protein
670	 40.04	0	749183..751477	+	764	197284585	clpA	PMI0690	-	ATP-dependent Clp protease ATP-binding subunit
671	 45.21	+1	751597..751815	-	72	197284586	infA	PMI0691	-	translation initiation factor IF-1
672	 44.44	0	752135..752827	-	230	197284587	aat	PMI0692	-	leucyl/phenylalanyl-tRNA-protein transferase
673	 44.58	0	752829..754580	-	583	197284588	cydC	PMI0693	-	ABC transporter, ATP-binding and permease protein
674	 43.28	0	754583..756352	-	589	197284589	cydD	PMI0694	-	ABC transporter, ATP-binding and permease protein
675	 42.40	0	756494..757453	-	319	197284590	trxB	PMI0695	-	thioredoxin reductase
676	 39.19	0	757996..758490	+	164	197284591	lrp	PMI0696	-	leucine-responsive regulator
677	 44.66	+1	758618..762421	+	1267	197284592	ftsK	PMI0697	-	cell division protein (DNA translocase)
678	 43.07	0	762534..763139	+	201	197284593	lolA	PMI0698	-	outer-membrane lipoprotein carrier protein
679	 44.30	0	763150..764499	+	449	197284594	-	PMI0699	-	ATPase
680	 43.18	0	764633..765922	+	429	197284595	serS	PMI0700	-	seryl-tRNA synthetase
681	 29.13	-2	766102..766434	-	110	197284596	-	PMI0701	-	hypothetical protein
682	 40.57	0	766835..767884	+	349	197284597	allD	PMI0702	-	ureidoglycolate dehydrogenase
683	 36.98	0	767957..768862	-	301	197284598	-	PMI0703	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.