IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
515	 30.72	-1	574658..574963	-	101	197284430	-	PMI0532	-	fimbrial operon regulator
516	 36.66	0	575064..576146	-	360	197284431	-	PMI0533	-	fimbrial adhesin
517	 40.04	0	576156..578690	-	844	197284432	-	PMI0534	-	fimbrial usher protein
518	 38.71	0	578700..579425	-	241	197284433	-	PMI0535	-	fimbrial chaperone
519	 35.16	0	579491..580036	-	181	197284434	uca	PMI0536	-	major fimbrial subunit
520	 30.07	-1	580267..580419	+	50	197284435	-	PMI0537	-	hypothetical protein
521	 41.13	0	580530..580670	-	46	197284436	holE1	PMI0538	-	DNA polymerase III, theta subunit
522	 39.87	0	580915..582582	+	555	197284437	glnS	PMI0539	-	glutaminyl-tRNA synthetase
523	 39.78	0	583221..584615	+	464	197284438	-	PMI0540	-	hypothetical protein
524	 36.07	0	584889..585728	+	279	197284439	-	PMI0542	-	hypothetical protein
525	 39.60	0	585792..586238	-	148	197284440	fur	PMI0543	-	ferric uptake regulation protein
526	 41.10	0	586429..586956	-	175	197284441	fldA	PMI0544	-	flavodoxin 1
527	 41.33	0	587115..587414	-	99	197284442	-	PMI0545	-	DNA-binding protein
528	 40.20	0	587613..588398	-	261	197284443	-	PMI0546	-	hydrolase
529	 41.30	0	588863..589414	+	183	197284444	seqA	PMI0547	-	negative regulator of replication initiation
530	 41.12	0	589489..591132	+	547	197284445	pgm	PMI0548	-	phosphoglucomutase
531	 37.06	0	591289..591771	+	160	197284446	-	PMI0549	-	hypothetical protein
532	 36.63	0	591928..592170	+	80	197284447	-	PMI0550	-	hypothetical protein
533	 28.23	-2	592163..592456	+	97	197284448	-	PMI0551	-	hypothetical protein
534	 41.51	0	592626..592784	+	52	197284449	-	PMI0552	-	hypothetical protein
535	 30.63	-1	592933..593265	+	110	197284450	-	PMI0553	-	hypothetical protein
536	 34.74	-1	593267..593551	+	94	197284451	-	PMI0554	-	transcriptional regulator
537	 38.65	0	593889..594095	+	68	197284452	-	PMI0555	-	hypothetical protein
538	 40.05	0	594319..595062	+	247	197284453	-	PMI0556	-	hypothetical protein
539	 38.44	0	595143..597218	-	691	197284454	-	PMI0557	-	hypothetical protein
540	 41.80	0	597215..598348	-	377	197284455	-	PMI0558	-	hypothetical protein
541	 40.57	0	598356..600938	-	860	197284456	-	PMI0559	-	hypothetical protein
542	 42.16	0	601039..602148	-	369	197284457	-	PMI0560	-	ATPase
543	 38.78	0	602174..605902	-	1242	197284458	-	PMI0561	-	hypothetical protein
544	 38.20	0	606290..607420	-	376	197284459	-	PMI0562	-	MFS-family transporter
545	 38.85	0	607523..608284	+	253	197284460	-	PMI0563	-	regulatory protein
546	 41.82	0	608354..609637	-	427	197284461	gltA	PMI0564	-	citrate synthase GltA
547	 42.33	0	610272..610649	+	125	197284462	sdhC	PMI0565	-	succinate dehydrogenase cytochrome b-556 subunit
548	 36.23	0	610643..610987	+	114	197284463	sdhD	PMI0566	-	succinate dehydrogenase hydrophobic membrane anchor protein
549	 44.77	+1	610987..612753	+	588	197284464	sdhA	PMI0567	-	succinate dehydrogenase flavoprotein subunit
550	 39.61	0	612788..613504	+	238	197284465	sdhB	PMI0568	-	succinate dehydrogenase iron-sulfur protein
551	 42.50	0	613789..616593	+	934	197284466	sucA	PMI0569	-	2-oxoglutarate dehydrogenase E1 component
552	 42.93	0	616607..617815	+	402	197284467	sucB	PMI0570	-	dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex
553	 43.53	0	617977..619143	+	388	197284468	sucC	PMI0571	-	succinyl-CoA synthetase beta chain
554	 41.58	0	619143..620015	+	290	197284469	sucD	PMI0572	-	succinyl-CoA synthetase alpha chain
555	 42.89	0	621499..623067	+	522	197284470	cydA	PMI0573	-	cytochrome D ubiquinol oxidase subunit I
556	 41.62	0	623082..624239	+	385	197284471	cydB	PMI0574	-	cytochrome D ubiquinol oxidase subunit II
557	 44.74	+1	624252..624365	+	37	197284472	-	PMI0575	-	hypothetical protein
558	 40.00	0	624365..624649	+	94	197284473	-	PMI0576	-	hypothetical protein
559	 33.89	-1	624740..625633	-	297	197284474	-	PMI0577	-	LysR-family transcriptional regulator
560	 33.63	-1	625724..627094	+	456	197284475	-	PMI0578	-	MFS-family transporter
561	 35.05	0	627084..627491	+	135	197284476	-	PMI0579	-	hypothetical protein
562	 39.65	0	627801..628196	+	131	197284477	-	PMI0580	-	thioesterase
563	 41.92	0	628196..628882	+	228	197284478	tolQ	PMI0581	-	biopolymer transport protein
564	 41.55	0	628905..629330	+	141	197284479	tolR	PMI0582	-	biopolymer transport protein
565	 45.41	+1	629358..630425	+	355	197284480	tolA	PMI0583	-	TolA protein
566	 42.88	0	630565..631863	+	432	197284481	tolB	PMI0584	-	TolB protein
567	 41.97	0	631909..632406	+	165	197284482	pal	PMI0585	-	peptidoglycan-associated lipoprotein
568	 39.28	0	632416..633189	+	257	197284483	-	PMI0586	-	hypothetical protein
569	 39.06	0	633679..634569	-	296	197284484	-	PMI0587	-	aminoglycoside 6-adenylyltransferase
570	 34.84	0	634809..635537	+	242	197284485	pnuC	PMI0588	-	nicotinamide mononucleotide transport protein
571	 40.51	0	635781..636839	+	352	197284486	aroG	PMI0589	-	phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthetase) phenylalanine-repressible
572	 41.57	0	636913..637665	-	250	197284487	gpmA	PMI0590	-	phosphoglyceromutase
573	 37.49	0	638016..639482	-	488	197284488	modF	PMI0591	-	molybdenum transport ATP-binding protein (photorepair protein)
574	 29.81	-2	639658..641217	+	519	197284489	-	PMI0592	-	adhesin secretion/activation protein (two-partner secretion system accessory protein)
575	 33.80	-1	641233..646641	+	1802	197284490	-	PMI0593	-	adhesin
576	 24.68	-2	646641..646952	+	103	197284491	-	PMI0594	-	hypothetical protein
577	 40.78	0	647162..647953	-	263	197284492	modR	PMI0595	-	molybdenum transport regulatory protein
578	 34.03	-1	648112..648255	+	47	197284493	-	PMI0596	-	hypothetical protein
579	 39.04	0	649074..649844	+	256	197284494	modA	PMI0597	-	molybdate ABC transporter, substrate-binding protein
580	 43.15	0	649862..650554	+	230	197284495	modB	PMI0598	-	molybdenum ABC transporter, permease protein
581	 39.34	0	650548..651612	+	354	197284496	modC	PMI0599	-	molybdenum ABC transporter, ATP-binding protein
582	 41.97	0	651677..652498	-	273	197284497	-	PMI0600	-	hydrolase
583	 41.41	0	652647..653636	+	329	197284498	pgl	PMI0601	-	6-phosphogluconolactonase
584	 44.13	0	653693..654970	-	425	197284499	bioA	PMI0602	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
585	 41.71	0	655074..656111	+	345	197284500	bioB	PMI0603	-	biotin synthase
586	 41.92	0	656111..657274	+	387	197284501	bioF	PMI0604	-	8-amino-7-oxononanoate synthase
587	 41.41	0	657249..658016	+	255	197284502	bioC	PMI0605	-	biotin synthesis protein BioC
588	 39.59	0	658009..658695	+	228	197284503	bioD	PMI0606	-	dethiobiotin synthetase
589	 41.54	0	659167..661176	+	669	197284504	uvrB	PMI0607	-	excinuclease ABC subunit B
590	 37.42	0	661372..662325	+	317	197284505	-	PMI0608	-	hypothetical protein
591	 42.09	0	662443..663378	-	311	197284506	-	PMI0609	-	hypothetical protein
592	 41.59	0	663808..664788	+	326	197284507	moaA	PMI0610	-	molybdenum cofactor biosynthesis protein A
593	 43.96	0	664830..665309	+	159	197284508	moaC	PMI0611	-	molybdenum cofactor biosynthesis protein C
594	 41.06	0	665306..665551	+	81	197284509	moaD	PMI0612	-	molybdenum cofactor biosynthesis protein D
595	 41.99	0	665553..666014	+	153	197284510	moaE	PMI0613	-	molybdenum cofactor biosynthesis protein E
596	 37.97	0	666209..666919	+	236	197284511	-	PMI0614	-	hypothetical protein
597	 36.94	0	667062..668171	-	369	197284512	-	PMI0615	-	ABC transporter, permease protein
598	 41.23	0	668187..669338	-	383	197284513	-	PMI0616	-	ABC transporter, permease protein
599	 41.98	0	669331..671100	-	589	197284514	-	PMI0617	-	ABC transporter, ATP-binding protein
600	 41.03	0	671121..672107	-	328	197284515	-	PMI0618	-	HlyD-family secretion protein
601	 38.77	0	672125..672823	-	232	197284516	-	PMI0619	-	TetR-family transcriptional regulator
602	 40.70	0	673134..674531	+	465	197284517	rhlE	PMI0620	-	ATP-dependent RNA helicase
603	 41.80	0	674541..675473	+	310	197284518	dusC	PMI0621	-	tRNA-dihydrouridine synthase C
604	 38.96	0	675679..675927	+	82	197284519	-	PMI0622	-	transglycosylase associated protein
605	 43.26	0	676011..676856	-	281	197284520	sseA	PMI0623	-	3-mercaptopyruvate sulfurtransferase
606	 45.16	+1	676869..677054	-	61	197284521	-	PMI0624	-	hypothetical protein
607	 37.94	0	677340..678707	-	455	197284522	dcuD	PMI0625	-	C4-dicarboxylate transporter
608	 40.31	0	678743..679918	-	391	197284523	metC	PMI0626	-	cystathionine beta-lyase
609	 37.72	0	680327..681694	+	455	197284524	-	PMI0627	-	lyase
610	 40.58	0	681765..683144	+	459	197284525	-	PMI0628	-	MmgE/Prp family protein
611	 39.93	0	683265..684173	-	302	197284526	-	PMI0629	-	LysR-family transcriptional regulator
612	 39.78	0	684437..686545	+	702	197284527	dinG	PMI0630	-	ATP-dependent helicase
613	 39.05	0	686606..687112	-	168	197284528	dps	PMI0631	-	DNA protection during starvation protein
614	 40.40	0	687390..688280	-	296	197284529	-	PMI0632	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.