IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
7	 41.36	0	15844..16827	+	327	197283922	-	PMI0007	-	hypothetical protein
8	 42.69	0	16989..17576	+	195	197283923	mog	PMI0008	-	molybdopterin biosynthesis protein
9	 40.34	0	18101..20026	+	641	197283924	dnaK	PMI0009	-	chaperone protein DnaK (heat shock protein 70)
10	 43.27	0	20133..21269	+	378	197283925	dnaJ	PMI0010	-	chaperone protein DnaJ
11	 39.69	0	21812..22990	+	392	197283926	nhaA	PMI0011	-	Na+/H+ antiporter
12	 37.68	0	23179..24075	+	298	197283927	nhaR	PMI0012	-	transcriptional activator protein NhaR
13	 40.23	0	24170..24430	-	86	197283928	rpsT	PMI0013	-	30S ribosomal protein S20
14	 41.40	0	24861..25802	+	313	197283929	ribF	PMI0014	-	riboflavin biosynthesis protein (includes: riboflavin kinase and FMN adenyltransferase)
15	 42.30	0	25832..28642	+	936	197283930	ileS	PMI0015	-	isoleucyl-tRNA synthetase
16	 40.08	0	28643..29161	+	172	197283931	lspA	PMI0016	-	lipoprotein signal peptidase
17	 40.13	0	29232..29702	+	156	197283932	fkpB	PMI0017	-	FKBP-type peptidyl-prolyl cis-trans isomerase
18	 42.87	0	29683..30636	+	317	197283933	lytB	PMI0018	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
19	 42.58	0	30879..31700	+	273	197283934	dapB	PMI0019	-	dihydrodipicolinate reductase
20	 43.21	0	32136..33299	+	387	197283935	carA	PMI0020	-	carbamoyl-phosphate synthase small chain
21	 42.75	0	33316..36543	+	1075	197283936	carB	PMI0021	-	carbamoyl-phosphate synthase large chain
22	 36.81	0	37025..37168	+	47	197283937	-	PMI0022	-	cell killing protein
23	 37.01	0	37240..44316	-	2358	197283938	-	PMI0023	-	intimin/invasin
24	 38.87	0	44615..45445	-	276	197283939	dkgA	PMI0024	-	2,5-diketo-D-gluconic acid reductase A
25	 42.40	0	45473..46630	-	385	197283940	-	PMI0025	-	iron-containing alcohol dehydrogenase
26	 35.50	0	46818..47600	+	260	197283941	-	PMI0026	-	hypothetical protein
27	 38.10	0	47778..48449	-	223	197283942	-	PMI0027	-	DedA-family membrane protein
28	 39.11	0	48574..49767	-	397	197283943	metC	PMI0028	-	cystathionine beta-lyase
29	 45.60	+1	50098..51108	+	336	197283944	exbB	PMI0029	-	biopolymer transport protein
30	 41.03	0	51115..51543	+	142	197283945	exbD	PMI0030	-	biopolymer transport protein
31	 44.36	0	53376..54500	+	374	197283946	hyb0	PMI0031	-	hydrogenase-2 small chain precursor
32	 43.20	0	54497..55510	+	337	197283947	hybA	PMI0032	-	hydrogenase-2 4fe-4s subunit
33	 40.61	0	55497..56678	+	393	197283948	hybB	PMI0033	-	hydrogenase-2 cytochrome b subunit
34	 41.90	0	56675..58378	+	567	197283949	hybC	PMI0034	-	hydrogenase-2 large subunit
35	 41.92	0	58378..58866	+	162	197283950	hybD	PMI0035	-	hydrogenase 2 maturation protease
36	 41.82	0	58863..59357	+	164	197283951	hybE	PMI0036	-	hydrogenase-2 subunit
37	 41.85	0	59419..60615	+	398	197283952	hypB	PMI0037	-	hydrogenase nickel incorporation protein
38	 44.19	0	60606..60872	+	88	197283953	hybG	PMI0038	-	hydrogenase-2 maturation protein
39	 42.28	0	60856..61995	+	379	197283954	hypD	PMI0039	-	hydrogenase formation protein
40	 42.65	0	61992..63011	+	339	197283955	hypE	PMI0040	-	hydrogenase formation protein
41	 43.28	0	63205..64431	+	408	197283956	-	PMI0041	-	hypothetical protein
42	 40.33	0	64428..64670	+	80	197283957	-	PMI0042	-	SirA-like protein
43	 41.25	0	64753..65661	-	302	197283958	rdgC	PMI0043	-	recombination associated protein RdgC
44	 39.22	0	66979..68184	+	401	197283959	-	PMI0044	-	outer membrane protein
45	 40.13	0	68271..70226	+	651	197283960	cpdB	PMI0045	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
46	 35.91	0	70309..71085	+	258	197283961	-	PMI0046	-	lipoprotein
47	 41.71	0	71104..72726	+	540	197283962	-	PMI0047	-	secreted 5'-nucleotidase
48	 39.50	0	73039..73638	-	199	197283963	-	PMI0048	-	hypothetical protein
49	 38.14	0	73768..77493	-	1241	197283964	sbcC	PMI0049	-	exonuclease
50	 41.28	0	77490..78722	-	410	197283965	sbcD	PMI0050	-	exonuclease subunit D
51	 41.59	0	78944..79633	+	229	197283966	phoB	PMI0051	-	phosphate regulon transcriptional regulator (two-component response regulator)
52	 41.38	0	79657..80949	+	430	197283967	phoR	PMI0052	-	phosphate regulon sensor protein (two-component histidine kinase)
53	 40.36	0	81447..82784	+	445	197283968	brnQ	PMI0053	-	branched-chain amino acid transport system II carrier protein
54	 35.66	0	82844..84130	-	428	197283969	-	PMI0054	-	hypothetical protein
55	 36.73	0	84120..84413	-	97	197283970	-	PMI0055	-	hypothetical protein
56	 37.54	0	84801..85727	-	308	197283971	-	PMI0056	-	hypothetical protein
57	 37.85	0	85724..86674	-	316	197283972	-	PMI0057	-	hypothetical protein
58	 36.54	0	87603..88538	-	311	197283973	-	PMI0060	-	hypothetical protein
59	 37.33	0	88535..89485	-	316	197283974	-	PMI0061	-	hypothetical protein
60	 37.43	0	89507..90433	-	308	197283975	-	PMI0062	-	hypothetical protein
61	 34.52	-1	90455..91381	-	308	197283976	-	PMI0063	-	hypothetical protein
62	 25.47	-2	92040..92522	+	160	197283977	-	PMI0064	-	hypothetical protein
63	 40.10	0	92694..93668	-	324	197283978	-	PMI0065	-	subunit of oxidoreductase
64	 39.72	0	93676..94473	-	265	197283979	-	PMI0066	-	oxidoreductase, cytochrome b subunit
65	 43.30	0	94470..95141	-	223	197283980	-	PMI0067	-	oxidoreductase, Fe-S subunit
66	 40.03	0	95208..95924	-	238	197283981	-	PMI0068	-	subunit of oxidoreductase
67	 43.08	0	95940..98042	-	700	197283982	-	PMI0069	-	aldehyde ferredoxin oxidoreductase
68	 43.81	0	98095..98724	-	209	197283983	-	PMI0070	-	oxidoreductase, Fe-S subunit
69	 20.16	-2	99189..99317	-	42	197283984	-	PMI0071	-	hypothetical protein
70	 42.92	0	99339..101111	-	590	197283985	ggt	PMI0072	-	gamma-glutamyltranspeptidase
71	 43.62	0	101402..102004	-	200	197283986	ahpC	PMI0073	-	alkyl hydroperoxide reductase
72	 40.82	0	102415..103002	-	195	197283987	-	PMI0074	-	hypothetical protein
73	 42.27	0	103110..104183	+	357	197283988	queA	PMI0075	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
74	 40.51	0	104365..105507	+	380	197283989	tgt	PMI0076	-	queuine tRNA-ribosyltransferase
75	 37.20	0	105594..105929	+	111	197283990	yajC	PMI0077	-	preprotein translocase subunit
76	 42.86	0	105962..107809	+	615	197283991	secD	PMI0078	-	protein-export membrane protein SecD
77	 40.73	0	107775..108788	+	337	197283992	secF	PMI0079	-	protein-export membrane protein SecF
78	 41.11	0	108907..109356	+	149	197283993	ribX	PMI0080	-	ATP-binding regulatory protein
79	 42.06	0	109413..110570	+	385	197283994	ribD	PMI0081	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase
80	 43.31	0	110783..111253	+	156	197283995	ribH	PMI0082	-	6,7-dimethyl-8-ribityllumazine synthase
81	 42.75	0	111282..111695	+	137	197283996	nusB	PMI0083	-	N utilization substance protein B
82	 41.49	0	111789..112769	+	326	197283997	thiL	PMI0084	-	thiamine-monophosphate kinase
83	 38.10	0	112855..113190	-	111	197283998	phnA	PMI0085	-	hypothetical protein
84	 37.04	0	114037..114279	-	80	197283999	-	PMI0087	-	plasmid-associated protein
85	 42.46	0	114382..115389	-	335	197284000	rbsR	PMI0088	-	ribose operon repressor (LacI-family transcriptional regulator)
86	 42.61	0	115394..116320	-	308	197284001	rbsK	PMI0089	-	ribokinase
87	 41.75	0	116397..117287	-	296	197284002	rbsB	PMI0090	-	D-ribose ABC transporter, substrate-binding periplasmic protein
88	 41.93	0	117327..118292	-	321	197284003	rbsC	PMI0091	-	ribose ABC transporter, permease protein
89	 39.10	0	118294..119802	-	502	197284004	rbsA	PMI0092	-	ribose ABC transporter, ATP-binding protein
90	 36.90	0	119810..120229	-	139	197284005	rbsD	PMI0093	-	high affinity ribose transport protein
91	 43.63	0	120570..122444	-	624	197284006	dxs	PMI0094	-	1-deoxy-D-xylulose-5-phosphate synthase
92	 44.48	0	122511..123434	-	307	197284007	ispA	PMI0095	-	geranyltranstransferase
93	 37.86	0	123435..123743	-	102	197284008	xseB	PMI0096	-	exodeoxyribonuclease VII small subunit
94	 38.15	0	123898..125349	+	483	197284009	thiI	PMI0097	-	thiamine biosynthesis protein
95	 22.22	-2	125729..125836	-	35	197284010	-	PMI0099	-	hypothetical protein
96	 28.18	-2	125842..126423	-	193	197284011	-	PMI0100	-	hypothetical protein
97	 40.78	0	126594..127211	-	205	197284012	thiJ	PMI0101	-	DJ-1/PfpI family protein
98	 38.85	0	127180..128103	-	307	197284013	panE	PMI0102	-	2-dehydropantoate 2-reductase
99	 37.60	0	128357..128848	+	163	197284014	-	PMI0103	-	hypothetical protein
100	 38.58	0	128911..130281	-	456	197284015	-	PMI0104	-	MFS-family transporter
101	 40.34	0	130455..131339	-	294	197284016	cyoE	PMI0105	-	protoheme IX farnesyltransferase
102	 43.24	0	131351..131683	-	110	197284017	cyoD	PMI0105A	-	cytochrome O ubiquinol oxidase protein
103	 42.97	0	131683..132294	-	203	197284018	cyoC	PMI0106	-	cytochrome O ubiquinol oxidase subunit III
104	 44.38	0	132294..134276	-	660	197284019	cyoB	PMI0107	-	cytochrome O ubiquinol oxidase subunit I
105	 42.17	0	134281..135231	-	316	197284020	cyoA	PMI0108	-	cytochrome O ubiquinol oxidase subunit II
106	 37.27	0	135728..136489	-	253	197284021	-	PMI0109	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.