IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
470	 40.06	0	541348..541704	+	118	197284385	-	PMI0486	-	phage holliday junction resolvase
471	 36.97	0	541704..542336	+	210	197284386	-	PMI0487	-	phage antitermination protein Q
472	 36.02	0	542647..543168	+	173	197284387	-	PMI0488	-	phage membrane protein
473	 39.01	0	543327..543749	+	140	197284388	-	PMI0489	-	phage protein
474	 40.58	0	543797..544072	+	91	197284389	-	PMI0490	-	phage protein
475	 42.68	0	544072..544542	+	156	197284390	-	PMI0491	-	phage lysozome
476	 36.48	0	544524..544682	+	52	197284391	-	PMI0491A	-	hypothetical protein
477	 42.86	0	544685..545146	+	153	197284392	-	PMI0492	-	phage endopeptidase
478	 39.65	0	545287..546078	+	263	197284393	-	PMI0493	-	phage protein
479	 43.48	0	546075..546281	+	68	197284394	-	PMI0494	-	hypothetical protein
480	 38.36	0	546278..546436	+	52	197284395	-	PMI0495	-	hypothetical protein
481	 44.50	0	546464..547072	+	202	197284396	-	PMI0496	-	phage protein
482	 45.36	+1	547075..548562	+	495	197284397	-	PMI0497	-	phage terminase large subunit
483	 43.47	0	548562..549932	+	456	197284398	-	PMI0498	-	phage protein
484	 42.60	0	549929..551050	+	373	197284399	-	PMI0499	-	phage protein
485	 44.62	+1	551162..551923	+	253	197284400	-	PMI0500	-	phage protein
486	 44.23	0	551937..552890	+	317	197284401	-	PMI0501	-	phage protein
487	 42.08	0	553217..553696	+	159	197284402	-	PMI0503	-	phage protein
488	 42.45	0	553699..554049	+	116	197284403	-	PMI0504	-	phage protein
489	 38.83	0	554051..554632	+	193	197284404	-	PMI0505	-	hypothetical protein
490	 39.80	0	554629..555030	+	133	197284405	-	PMI0506	-	phage protein
491	 41.25	0	555076..555732	+	218	197284406	-	PMI0507	-	phage protein
492	 38.56	0	555784..556089	+	101	197284407	-	PMI0508	-	phage protein
493	 42.03	0	556116..556391	+	91	197284408	-	PMI0509	-	phage protein
494	 32.48	-1	556617..556850	+	77	197284409	-	PMI0510	-	phage protein
495	 36.05	0	556857..557666	+	269	197284410	-	PMI0511	-	phage protein
496	 38.25	0	557917..558750	-	277	197284411	ant	PMI0512	-	phage antirepressor protein
497	 32.72	-1	558820..558981	-	53	197284412	-	PMI0513	-	phage protein
498	 37.60	0	559095..559352	+	85	197284413	mnt	PMI0514	-	phage regulatory protein
499	 32.39	-1	559453..560298	+	281	197284414	EP0005	PMI0515	-	phage replication protein
500	 29.05	-2	560285..560704	+	139	197284415	-	PMI0516	-	hypothetical protein
501	 29.00	-2	560697..561365	+	222	197284416	-	PMI0517	-	hypothetical protein
502	 30.73	-1	561463..562116	+	217	197284417	-	PMI0518	-	phage lipoprotein
503	 42.01	0	562176..565115	+	979	197284418	-	PMI0519	-	phage tail tape measure protein
504	 29.11	-2	565138..565350	+	70	197284419	-	PMI0520	-	hypothetical protein
505	 35.40	0	565390..565680	+	96	197284420	-	PMI0521	-	phage protein
506	 30.85	-1	565700..565900	-	66	197284421	-	PMI0522	-	phage protein
507	 38.30	0	566044..566385	+	113	197284422	-	PMI0523	-	phage minor tail protein
508	 42.07	0	566382..567125	+	247	197284423	-	PMI0524	-	phage minor tail protein
509	 41.63	0	567122..567832	+	236	197284424	-	PMI0525	-	phage tail assembly protein
510	 44.05	0	567829..568416	+	195	197284425	-	PMI0526	-	phage tail assembly protein
511	 42.13	0	568468..572661	+	1397	197284426	-	PMI0527	-	phage host specificity protein
512	 44.17	0	572655..573023	+	122	197284427	-	PMI0528	-	phage protein
513	 40.33	0	573025..573639	+	204	197284428	-	PMI0529	-	phage protein
514	 37.93	0	573689..573949	+	86	197284429	-	PMI0530	-	hypothetical protein
515	 30.72	-1	574658..574963	-	101	197284430	-	PMI0532	-	fimbrial operon regulator
516	 36.66	0	575064..576146	-	360	197284431	-	PMI0533	-	fimbrial adhesin
517	 40.04	0	576156..578690	-	844	197284432	-	PMI0534	-	fimbrial usher protein
518	 38.71	0	578700..579425	-	241	197284433	-	PMI0535	-	fimbrial chaperone
519	 35.16	0	579491..580036	-	181	197284434	uca	PMI0536	-	major fimbrial subunit
520	 30.07	-1	580267..580419	+	50	197284435	-	PMI0537	-	hypothetical protein
521	 41.13	0	580530..580670	-	46	197284436	holE1	PMI0538	-	DNA polymerase III, theta subunit
522	 39.87	0	580915..582582	+	555	197284437	glnS	PMI0539	-	glutaminyl-tRNA synthetase
523	 39.78	0	583221..584615	+	464	197284438	-	PMI0540	-	hypothetical protein
524	 36.07	0	584889..585728	+	279	197284439	-	PMI0542	-	hypothetical protein
525	 39.60	0	585792..586238	-	148	197284440	fur	PMI0543	-	ferric uptake regulation protein
526	 41.10	0	586429..586956	-	175	197284441	fldA	PMI0544	-	flavodoxin 1
527	 41.33	0	587115..587414	-	99	197284442	-	PMI0545	-	DNA-binding protein
528	 40.20	0	587613..588398	-	261	197284443	-	PMI0546	-	hydrolase
529	 41.30	0	588863..589414	+	183	197284444	seqA	PMI0547	-	negative regulator of replication initiation
530	 41.12	0	589489..591132	+	547	197284445	pgm	PMI0548	-	phosphoglucomutase
531	 37.06	0	591289..591771	+	160	197284446	-	PMI0549	-	hypothetical protein
532	 36.63	0	591928..592170	+	80	197284447	-	PMI0550	-	hypothetical protein
533	 28.23	-2	592163..592456	+	97	197284448	-	PMI0551	-	hypothetical protein
534	 41.51	0	592626..592784	+	52	197284449	-	PMI0552	-	hypothetical protein
535	 30.63	-1	592933..593265	+	110	197284450	-	PMI0553	-	hypothetical protein
536	 34.74	-1	593267..593551	+	94	197284451	-	PMI0554	-	transcriptional regulator
537	 38.65	0	593889..594095	+	68	197284452	-	PMI0555	-	hypothetical protein
538	 40.05	0	594319..595062	+	247	197284453	-	PMI0556	-	hypothetical protein
539	 38.44	0	595143..597218	-	691	197284454	-	PMI0557	-	hypothetical protein
540	 41.80	0	597215..598348	-	377	197284455	-	PMI0558	-	hypothetical protein
541	 40.57	0	598356..600938	-	860	197284456	-	PMI0559	-	hypothetical protein
542	 42.16	0	601039..602148	-	369	197284457	-	PMI0560	-	ATPase
543	 38.78	0	602174..605902	-	1242	197284458	-	PMI0561	-	hypothetical protein
544	 38.20	0	606290..607420	-	376	197284459	-	PMI0562	-	MFS-family transporter
545	 38.85	0	607523..608284	+	253	197284460	-	PMI0563	-	regulatory protein
546	 41.82	0	608354..609637	-	427	197284461	gltA	PMI0564	-	citrate synthase GltA
547	 42.33	0	610272..610649	+	125	197284462	sdhC	PMI0565	-	succinate dehydrogenase cytochrome b-556 subunit
548	 36.23	0	610643..610987	+	114	197284463	sdhD	PMI0566	-	succinate dehydrogenase hydrophobic membrane anchor protein
549	 44.77	+1	610987..612753	+	588	197284464	sdhA	PMI0567	-	succinate dehydrogenase flavoprotein subunit
550	 39.61	0	612788..613504	+	238	197284465	sdhB	PMI0568	-	succinate dehydrogenase iron-sulfur protein
551	 42.50	0	613789..616593	+	934	197284466	sucA	PMI0569	-	2-oxoglutarate dehydrogenase E1 component
552	 42.93	0	616607..617815	+	402	197284467	sucB	PMI0570	-	dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex
553	 43.53	0	617977..619143	+	388	197284468	sucC	PMI0571	-	succinyl-CoA synthetase beta chain
554	 41.58	0	619143..620015	+	290	197284469	sucD	PMI0572	-	succinyl-CoA synthetase alpha chain
555	 42.89	0	621499..623067	+	522	197284470	cydA	PMI0573	-	cytochrome D ubiquinol oxidase subunit I
556	 41.62	0	623082..624239	+	385	197284471	cydB	PMI0574	-	cytochrome D ubiquinol oxidase subunit II
557	 44.74	+1	624252..624365	+	37	197284472	-	PMI0575	-	hypothetical protein
558	 40.00	0	624365..624649	+	94	197284473	-	PMI0576	-	hypothetical protein
559	 33.89	-1	624740..625633	-	297	197284474	-	PMI0577	-	LysR-family transcriptional regulator
560	 33.63	-1	625724..627094	+	456	197284475	-	PMI0578	-	MFS-family transporter
561	 35.05	0	627084..627491	+	135	197284476	-	PMI0579	-	hypothetical protein
562	 39.65	0	627801..628196	+	131	197284477	-	PMI0580	-	thioesterase
563	 41.92	0	628196..628882	+	228	197284478	tolQ	PMI0581	-	biopolymer transport protein
564	 41.55	0	628905..629330	+	141	197284479	tolR	PMI0582	-	biopolymer transport protein
565	 45.41	+1	629358..630425	+	355	197284480	tolA	PMI0583	-	TolA protein
566	 42.88	0	630565..631863	+	432	197284481	tolB	PMI0584	-	TolB protein
567	 41.97	0	631909..632406	+	165	197284482	pal	PMI0585	-	peptidoglycan-associated lipoprotein
568	 39.28	0	632416..633189	+	257	197284483	-	PMI0586	-	hypothetical protein
569	 39.06	0	633679..634569	-	296	197284484	-	PMI0587	-	aminoglycoside 6-adenylyltransferase
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.