IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3471	 43.99	0	3916190..3916480	+	96	197287386	hypC	PMI3583	-	hydrogenase formation protein
3472	 41.90	0	3916613..3916927	+	104	197287387	sugE	PMI3584	-	quaternary ammonium compound-resistance protein
3473	 39.44	0	3917000..3917359	-	119	197287388	frdD	PMI3585	-	fumarate reductase subunit D
3474	 43.69	0	3917374..3917769	-	131	197287389	frdC	PMI3586	-	fumarate reductase subunit C
3475	 45.32	+1	3917784..3918509	-	241	197287390	frdB	PMI3587	-	fumarate reductase iron-sulfur protein
3476	 45.85	+1	3918514..3920310	-	598	197287391	frdA	PMI3588	-	fumarate reductase flavoprotein subunit
3477	 42.13	0	3921270..3922247	+	325	197287392	poxA	PMI3589	-	lysyl-tRNA synthetase
3478	 39.81	0	3922509..3923588	-	359	197287393	glpQ	PMI3590	-	glycerophosphoryl diester phosphodiesterase
3479	 43.39	0	3923722..3925074	-	450	197287394	glpT	PMI3591	-	glycerol-3-phosphate transporter (MFS-family transporter)
3480	 45.87	+1	3925455..3927113	+	552	197287395	glpA	PMI3592	-	anaerobic glycerol-3-phosphate dehydrogenase subunit A
3481	 42.28	0	3927103..3928410	+	435	197287396	glpB	PMI3593	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
3482	 37.60	0	3928407..3929600	+	397	197287397	glpC	PMI3594	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
3483	 42.57	0	3929757..3930860	-	367	197287398	gldA	PMI3595	-	glycerol dehydrogenase
3484	 38.67	0	3931181..3931855	-	224	197287399	-	PMI3596	-	hypothetical protein
3485	 42.35	0	3932066..3932320	+	84	197287400	sirA	PMI3597	-	sulfurtransferase (tRNA 2-thiouridine synthesizing protein A)
3486	 39.82	0	3933031..3934170	+	379	197287401	-	PMI3598	-	multidrug efflux pump
3487	 42.33	0	3934196..3937330	+	1044	197287402	-	PMI3599	-	multidrug efflux pump
3488	 43.75	0	3937417..3939759	-	780	197287403	ppaA	PMI3600	-	P-type cation-translocating membrane ATPase
3489	 38.44	0	3939930..3940556	-	208	197287404	-	PMI3601	-	hypothetical protein
3490	 37.53	0	3940703..3941107	+	134	197287405	-	PMI3602	-	hypothetical protein
3491	 31.97	-1	3941171..3941464	-	97	197287406	-	PMI3603	-	hypothetical protein
3492	 41.37	0	3941482..3942066	-	194	197287407	-	PMI3604	-	hypothetical protein
3493	 46.93	+1	3942294..3944132	+	612	197287408	ftsY	PMI3605	-	cell division protein
3494	 44.74	+1	3944138..3944803	+	221	197287409	ftsE	PMI3606	-	cell division ATP-binding protein
3495	 41.92	0	3944796..3945773	+	325	197287410	ftsX	PMI3607	-	cell division protein
3496	 42.81	0	3946115..3946969	+	284	197287411	rpoH	PMI3608	-	RNA polymerase sigma-32 factor
3497	 42.82	0	3947064..3948212	+	382	197287412	garK	PMI3609	-	glycerate kinase
3498	 39.09	0	3948188..3948604	-	138	197287413	-	PMI3610	-	acetyltransferase
3499	 38.30	0	3948616..3949803	-	395	197287414	-	PMI3611	-	MFS-family transporter
3500	 36.27	0	3949917..3950393	+	158	197287415	-	PMI3612	-	MarR-family transcriptional regulator
3501	 41.43	0	3950433..3951185	-	250	197287416	-	PMI3613	-	peptidase
3502	 40.73	0	3951675..3952769	-	364	197287417	ugpC	PMI3614	-	sn-glycerol-3-phosphate ABC transporter, ATP-binding protein
3503	 42.29	0	3952771..3953619	-	282	197287418	ugpE	PMI3615	-	sn-glycerol-3-phosphate ABC transporter, permease protein
3504	 37.74	0	3953619..3954503	-	294	197287419	ugpA	PMI3616	-	sn-glycerol-3-phosphate ABC transporter, permease protein
3505	 42.68	0	3954571..3955875	-	434	197287420	ugpB	PMI3617	-	glycerol-3-phosphate ABC transporter, substrate-binding protein
3506	 40.31	0	3956051..3956767	+	238	197287421	ugpQ	PMI3618	-	glycerophosphoryl diester phosphodiesterase
3507	 41.35	0	3956830..3958026	-	398	197287422	cynX	PMI3619	-	cyanate transport protein (MFS-family transporter)
3508	 29.30	-2	3958314..3959279	+	321	197287423	-	PMI3620	-	hypothetical protein
3509	 29.11	-2	3959384..3959596	+	70	197287424	-	PMI3621	-	hypothetical protein
3510	 41.08	0	3959637..3959933	-	98	197287425	fis	PMI3622	-	DNA-binding protein Fis
3511	 47.53	+1	3959954..3960925	-	323	197287426	dusB	PMI3623	-	tRNA-dihydrouridine synthase B
3512	 45.92	+1	3961247..3962128	-	293	197287427	prmA	PMI3624	-	ribosomal protein L11 methyltransferase
3513	 44.61	+1	3962153..3963598	-	481	197287428	panF	PMI3625	-	sodium/pantothenate symporter
3514	 40.96	0	3963588..3963836	-	82	197287429	-	PMI3626	-	hypothetical protein
3515	 44.89	+1	3964066..3965415	-	449	197287430	accC	PMI3627	-	biotin carboxylase
3516	 45.22	+1	3965428..3965898	-	156	197287431	accB	PMI3628	-	biotin carboxyl carrier protein
3517	 41.44	0	3965931..3966374	-	147	197287432	aroQ	PMI3629	-	3-dehydroquinate dehydratase
3518	 45.03	+1	3966808..3967782	-	324	197287433	-	PMI3630	-	possible zinc-binding dehydrogenase
3519	 44.54	0	3968469..3969512	+	347	197287434	mreB	PMI3631	-	rod shape-determining protein
3520	 43.55	0	3969614..3970660	+	348	197287435	mreC	PMI3632	-	rod shape-determining protein
3521	 40.20	0	3970660..3971154	+	164	197287436	mreD	PMI3633	-	rod shape-determining protein
3522	 44.05	0	3971206..3971793	+	195	197287437	-	PMI3634	-	inhibitor of septum formation
3523	 41.36	0	3971790..3973259	+	489	197287438	cafA	PMI3635	-	ribonuclease G
3524	 40.48	0	3973304..3977107	+	1267	197287439	-	PMI3636	-	hypothetical protein
3525	 41.35	0	3977104..3977964	+	286	197287440	-	PMI3637	-	carbon-nitrogen hydrolase
3526	 44.12	0	3977961..3979406	+	481	197287441	tldD	PMI3638	-	modulator of DNA gyrase
3527	 41.81	0	3979500..3980006	+	168	197287442	-	PMI3639	-	exported ribonuclease
3528	 38.30	0	3980006..3980287	+	93	197287443	-	PMI3640	-	ribonuclease inhibitor
3529	 40.82	0	3980378..3980938	-	186	197287444	-	PMI3641	-	hypothetical protein
3530	 45.21	+1	3981098..3982453	+	451	197287445	tldE	PMI3642	-	modulator of DNA gyrase
3531	 40.15	0	3982559..3982969	-	136	197287446	rnk	PMI3643	-	regulator of nucleoside diphosphate kinase
3532	 41.76	0	3983144..3983416	-	90	197287447	ptsO	PMI3644	-	phosphocarrier protein
3533	 45.26	+1	3983413..3984267	-	284	197287448	-	PMI3645	-	P-loop ATPase
3534	 40.17	0	3984352..3984819	-	155	197287449	ptsN	PMI3646	-	nitrogen regulatory protein [includes: PTS system EIIA component]
3535	 37.50	0	3984975..3985262	-	95	197287450	-	PMI3647	-	probable sigma(54) modulation protein
3536	 41.73	0	3985286..3986761	-	491	197287451	rpoN	PMI3648	-	RNA polymerase sigma-54 factor (sigma-N)
3537	 43.53	0	3986821..3987546	-	241	197287452	-	PMI3649	-	ABC transporter ATP-binding protein
3538	 36.89	0	3987553..3988086	-	177	197287453	-	PMI3650	-	organic solvent tolerance protein
3539	 39.21	0	3988067..3988645	-	192	197287454	-	PMI3651	-	hypothetical protein
3540	 40.86	0	3988663..3989220	-	185	197287455	kdsC	PMI3652	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
3541	 41.24	0	3989248..3990234	-	328	197287456	kdsD	PMI3653	-	arabinose 5-phosphate isomerase
3542	 40.67	0	3990240..3991220	-	326	197287457	-	PMI3654	-	sodium/calcium exchanger protein
3543	 41.70	0	3991464..3992276	+	270	197287458	-	PMI3655	-	ABC transporter ATP-binding protein
3544	 45.77	+1	3992280..3993059	+	259	197287459	-	PMI3656	-	hypothetical protein
3545	 38.18	0	3993063..3993599	+	178	197287460	-	PMI3657	-	hypothetical protein
3546	 39.05	0	3993673..3994302	+	209	197287461	-	PMI3658	-	toluene tolerance protein
3547	 36.73	0	3994304..3994597	+	97	197287462	-	PMI3659	-	anti-sigma factor antagonist
3548	 38.43	0	3994738..3994992	+	84	197287463	-	PMI3660	-	morphoprotein
3549	 44.34	0	3995041..3996303	+	420	197287464	murA	PMI3661	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3550	 28.05	-2	3996387..3997691	-	434	197287465	-	PMI3662	-	hypothetical protein
3551	 28.18	-2	3997684..3998595	-	303	197287466	-	PMI3663	-	hypothetical protein
3552	 36.57	0	3998924..3999973	+	349	197287467	-	PMI3664	-	hypothetical protein
3553	 42.39	0	4000014..4001084	-	356	197287468	degS	PMI3665	-	protease
3554	 42.31	0	4001276..4002667	-	463	197287469	degQ	PMI3666	-	protease
3555	 40.99	0	4002901..4003305	-	134	197287470	-	PMI3667	-	hypothetical protein
3556	 40.39	0	4003508..4004626	+	372	197287471	-	PMI3668	-	ATPase
3557	 46.62	+1	4005076..4005504	+	142	197287472	rplM	PMI3669	-	50S ribosomal protein L13
3558	 46.56	+1	4005520..4005912	+	130	197287473	rpsI	PMI3670	-	30S ribosomal protein S9
3559	 42.68	0	4006548..4007189	+	213	197287474	sspA	PMI3671	-	stringent starvation protein A
3560	 46.67	+1	4007196..4007705	+	169	197287475	sspB	PMI3672	-	stringent starvation protein B
3561	 38.50	0	4007785..4008810	-	341	197287476	-	PMI3673	-	MerR-family transcriptional regulator
3562	 44.31	0	4008961..4010226	-	421	197287477	-	PMI3674	-	probable aminohydrolase
3563	 43.06	0	4010241..4011515	-	424	197287478	-	PMI3675	-	C4-dicarboxylate transporter
3564	 41.61	0	4012039..4013439	-	466	197287479	gltD	PMI3676	-	glutamate synthase (NADPH) small chain
3565	 44.35	0	4013447..4017904	-	1485	197287480	gltB	PMI3677	-	glutamate synthase [NADPH] large chain
3566	 40.86	0	4018571..4020907	+	778	197287481	arcB	PMI3678	-	aerobic respiration control sensor/response regulatory protein
3567	 39.17	0	4021144..4021794	+	216	197287482	elbB	PMI3679	-	enhancing lycopene biosynthesis protein 2
3568	 38.18	0	4021815..4022516	+	233	197287483	mtgA	PMI3680	-	monofunctional biosynthetic peptidoglycan transglycosylase
3569	 37.19	0	4022520..4023401	-	293	197287484	ureR	PMI3681	-	urease operon transcriptional activator
3570	 43.76	0	4023895..4024719	+	274	197287485	UreD	PMI3682	-	urease accessory protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.