IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3353	 39.35	0	3782915..3783130	-	71	197287268	-	PMI3456	-	hypothetical protein
3354	 40.70	0	3783274..3784278	-	334	197287269	argI	PMI3457	-	ornithine carbamoyltransferase chain I
3355	 41.20	0	3784460..3784891	+	143	197287270	-	PMI3458	-	hypothetical protein
3356	 41.84	0	3784985..3785854	-	289	197287271	-	PMI3459	-	pirin-like protein
3357	 33.33	-1	3786163..3786330	-	55	197287272	-	PMI3460	-	lipoprotein
3358	 40.59	0	3786745..3787254	-	169	197287273	-	PMI3461	-	acetyltransferase
3359	 42.26	0	3787654..3790542	-	962	197287274	valS	PMI3462	-	valyl-tRNA synthetase
3360	 45.33	+1	3790556..3791005	-	149	197287275	holC	PMI3463	-	DNA polymerase III, chi subunit
3361	 44.27	0	3791086..3792594	-	502	197287276	pepA	PMI3464	-	cytosol aminopeptidase
3362	 43.81	0	3792881..3793978	+	365	197287277	-	PMI3465	-	permease
3363	 41.39	0	3793978..3795057	+	359	197287278	-	PMI3466	-	permease
3364	 42.20	0	3795147..3796364	-	405	197287279	ampH	PMI3467	-	penicillin-binding protein
3365	 43.68	0	3798109..3799374	+	421	197287280	intB	PMI3468	-	prophage integrase
3366	 34.07	-1	3799990..3800259	+	89	197287281	-	PMI3470	-	hypothetical protein
3367	 28.90	-2	3800237..3801025	+	262	197287282	-	PMI3471	-	hypothetical protein
3368	 30.30	-1	3801072..3801203	+	43	197287283	-	PMI3472	-	hypothetical protein
3369	 25.13	-2	3801359..3801553	+	64	197287284	-	PMI3473	-	hypothetical protein
3370	 35.53	0	3801982..3803076	+	364	197287285	-	PMI3474	-	hypothetical protein
3371	 31.03	-1	3803069..3804328	+	419	197287286	-	PMI3475	-	hypothetical protein
3372	 31.59	-1	3804404..3804919	-	171	197287287	-	PMI3476	-	hypothetical protein
3373	 30.19	-1	3804960..3805436	-	158	197287288	-	PMI3477	-	hypothetical protein
3374	 39.83	0	3806544..3806774	-	76	197287289	-	PMI3478	-	phage regulatory protein
3375	 39.97	0	3806880..3807467	-	195	197287290	-	PMI3479	-	hypothetical protein
3376	 32.68	-1	3807957..3808724	+	255	197287291	-	PMI3480	-	hypothetical protein
3377	 43.75	0	3808777..3809640	+	287	197287292	-	PMI3481	-	ATP/GTP-binding protein
3378	 46.24	+1	3809732..3810157	+	141	197287293	-	PMI3482	-	plasmid-related antirestriction protein
3379	 48.86	+1	3810172..3811008	+	278	197287294	-	PMI3483	-	plasmid-related protein
3380	 44.63	+1	3811220..3811927	+	235	197287295	-	PMI3484	-	hypothetical protein
3381	 49.15	+1	3811924..3812100	+	58	197287296	-	PMI3485	-	hypothetical protein
3382	 42.42	0	3812105..3812566	+	153	197287297	-	PMI3486	-	hypothetical protein
3383	 44.95	+1	3812729..3812926	+	65	197287298	-	PMI3487	-	hypothetical protein
3384	 45.93	+1	3812971..3813216	+	81	197287299	-	PMI3488	-	hypothetical protein
3385	 44.44	0	3813446..3813778	+	110	197287300	-	PMI3489	-	hypothetical protein
3386	 43.45	0	3813809..3814243	+	144	197287301	-	PMI3490	-	hypothetical protein
3387	 42.36	0	3814944..3816527	+	527	197287302	-	PMI3491	-	plasmid-related protein
3388	 41.56	0	3816783..3817013	-	76	197287303	-	PMI3492	-	hypothetical protein
3389	 42.94	0	3817050..3817226	-	58	197287304	-	PMI3493	-	hypothetical protein
3390	 30.79	-1	3818322..3818675	+	117	197287305	-	PMI3495	-	hypothetical protein
3391	 34.49	-1	3818665..3819873	+	402	197287306	-	PMI3496	-	hypothetical protein
3392	 30.70	-1	3819892..3821031	+	379	197287307	-	PMI3497	-	hypothetical protein
3393	 24.49	-2	3822084..3822818	-	244	197287308	-	PMI3500	-	hypothetical protein
3394	 28.15	-2	3822824..3824308	-	494	197287309	-	PMI3501	-	deoxyguanosinetriphosphate triphosphohydrolase
3395	 43.75	0	3825382..3827900	-	259	197287310	-	PMI3507	-	hypothetical protein
3396	 41.67	0	3825614..3826093	-	159	197287311	-	PMI3505	-	IS element transposase
3397	 47.58	+1	3826053..3827252	+	399	197287312	-	PMI3506	-	transposase
3398	 27.13	-2	3828735..3828992	+	85	197287313	-	PMI3508	-	transcriptional regulator
3399	 40.36	0	3829468..3830079	-	203	197287314	prfH	PMI3509	-	probable peptide chain release factor
3400	 39.51	0	3830079..3831227	-	382	197287315	-	PMI3510	-	hypothetical protein
3401	 42.34	0	3831482..3832258	-	258	197287316	deoR	PMI3511	-	deoxyribose operon repressor
3402	 41.41	0	3832314..3832982	-	222	197287317	deoC	PMI3512	-	deoxyribose-phosphate aldolase
3403	 39.96	0	3833162..3834082	+	306	197287318	deoK	PMI3513	-	deoxyribokinase
3404	 42.95	0	3834299..3835213	+	304	197287319	-	PMI3514	-	phosphosugar binding/isomerase
3405	 40.73	0	3835253..3836617	+	454	197287320	-	PMI3515	-	PTS system EIIBC component
3406	 41.55	0	3836649..3837500	+	283	197287321	-	PMI3516	-	phosphosugar-binding transcriptional regulator
3407	 39.54	0	3837500..3838288	+	262	197287322	-	PMI3517	-	hypothetical protein
3408	 52.53	+2	3838524..3838622	+	32	197287323	ivbL	PMI3518	-	ilvBN operon leader peptide
3409	 44.01	0	3838730..3840424	+	564	197287324	ilvB	PMI3519	-	acetolactate synthase isozyme I large subunit
3410	 37.54	0	3840428..3840712	+	94	197287325	ilvN	PMI3520	-	acetolactate synthase isozyme I small subunit
3411	 40.91	0	3840767..3841663	-	298	197287326	-	PMI3521	-	cation efflux protein
3412	 41.11	0	3841740..3842318	-	192	197287327	-	PMI3522	-	transcriptional regulator
3413	 40.82	0	3842557..3843744	+	395	197287328	-	PMI3523	-	MFS-family transporter
3414	 42.69	0	3844515..3845861	+	448	197287329	-	PMI3524	-	permease
3415	 37.50	0	3845989..3846492	+	167	197287330	-	PMI3525	-	acetyltransferase
3416	 42.91	0	3846850..3848499	+	549	197287331	-	PMI3526	-	Na(+)/H(+) exchanger
3417	 42.61	0	3848502..3849374	+	290	197287332	-	PMI3527	-	hypothetical protein
3418	 43.08	0	3849289..3850242	-	317	197287333	metR	PMI3528	-	LysR-family transcriptional regulator
3419	 43.36	0	3850350..3852623	+	757	197287334	metE	PMI3529	-	5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase
3420	 33.82	-1	3852792..3853619	+	275	197287335	-	PMI3530	-	hypothetical protein
3421	 39.69	0	3853724..3854116	-	130	197287336	-	PMI3531	-	hypothetical protein
3422	 42.95	0	3854459..3855217	+	252	197287337	udp	PMI3532	-	uridine phosphorylase
3423	 39.85	0	3855367..3856149	+	260	197287338	-	PMI3533	-	hypothetical protein
3424	 45.76	+1	3856221..3856751	+	176	197287339	-	PMI3534	-	hypothetical protein
3425	 41.69	0	3856854..3858194	+	446	197287340	rumC	PMI3535	-	DNA recombination protein
3426	 39.68	0	3858276..3859031	+	251	197287341	ubiE	PMI3536	-	ubiquinone/menaquinone biosynthesis methyltransferase
3427	 39.72	0	3859033..3859674	+	213	197287342	-	PMI3537	-	hypothetical protein
3428	 38.28	0	3859674..3861311	+	545	197287343	ubiB	PMI3538	-	probable ubiquinone biosynthesis protein
3429	 40.45	0	3861437..3861703	+	88	197287344	tatA	PMI3539	-	sec-independent protein translocase
3430	 43.13	0	3861707..3862237	+	176	197287345	tatB	PMI3540	-	Sec-independent protein translocase
3431	 39.31	0	3862241..3863026	+	261	197287346	tatC	PMI3541	-	sec-independent protein translocase
3432	 39.52	0	3863089..3863589	-	166	197287347	rfaH	PMI3542	-	transcriptional activator
3433	 47.64	+1	3863776..3864984	-	402	197287348	-	PMI3543	-	transposase
3434	 43.65	0	3865007..3865423	+	138	197287349	-	PMI3544	-	transposase
3435	 40.50	0	3865622..3866347	+	241	197287350	pepE	PMI3545	-	dipeptidase E
3436	 41.29	0	3866467..3867936	+	489	197287351	ubiD	PMI3546	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
3437	 40.31	0	3867952..3868653	+	233	197287352	fadI	PMI3547	-	NAD(P)H-flavin reductase
3438	 43.64	0	3868809..3869972	-	387	197287353	fadA	PMI3549	-	3-ketoacyl-CoA thiolase
3439	 41.45	0	3869984..3872164	-	726	197287354	fadB	PMI3550	-	fatty oxidation complex alpha subunit [includes: enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase and 3-hydroxybutyryl-CoA epimerase]
3440	 37.98	0	3872453..3873787	+	444	197287355	pepQ	PMI3551	-	Xaa-Pro dipeptidase
3441	 42.19	0	3873787..3874407	+	206	197287356	-	PMI3552	-	hypothetical protein
3442	 40.36	0	3874433..3875884	+	483	197287357	trkH	PMI3553	-	Trk system potassium uptake protein
3443	 36.53	0	3875905..3876435	+	176	197287358	hemG	PMI3554	-	protoporphyrinogen oxidase
3444	 37.42	0	3882343..3883002	-	219	197287359	-	PMI3555	-	GntR-family transcriptional regulator
3445	 39.74	0	3883493..3884725	+	410	197287360	-	PMI3556	-	hypothetical protein
3446	 41.86	0	3884739..3885524	+	261	197287361	-	PMI3557	-	hypothetical protein
3447	 41.63	0	3885606..3887183	+	525	197287362	-	PMI3558	-	allophanate hydrolase
3448	 43.36	0	3887200..3888945	+	581	197287363	-	PMI3559	-	bifunctional acetyl-/propionyl-coenzyme A carboxylase alpha chain [includes: biotin carboxylase and biotin carboxyl carrier protein]
3449	 38.22	0	3889105..3889902	+	265	197287364	-	PMI3560	-	hypothetical protein
3450	 24.67	-2	3889971..3890270	+	99	197287365	-	PMI3561	-	hypothetical protein
3451	 28.94	-2	3890267..3891655	+	462	197287366	-	PMI3562	-	radical SAM superfamily protein
3452	 29.46	-2	3891648..3892757	+	369	197287367	-	PMI3563	-	radical SAM superfamily protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.