IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
278	 34.01	-1	340636..341520	+	294	197284193	-	PMI0286	-	transcriptional regulator
279	 39.70	0	341514..342770	-	418	197284194	-	PMI0287	-	amidohydrolase/metallopeptidase
280	 33.55	-1	343139..344524	-	461	197284195	rafY	PMI0288	-	glycoporin
281	 32.87	-1	344579..345223	-	214	197284196	pgmB	PMI0289	-	beta-phosphoglucomutase
282	 36.31	0	345216..347933	-	905	197284197	-	PMI0290	-	glycosyl hydrolase
283	 37.13	0	347959..349380	-	473	197284198	treB	PMI0291	-	trehalose-specific PTS system, EIIBC component
284	 29.17	-2	349391..349486	-	31	197284199	-	PMI0292	-	hypothetical protein
285	 34.98	0	349499..350467	-	322	197284200	treR	PMI0293	-	trehalose operon repressor (LacI-family transcriptional regulator)
286	 27.15	-2	350630..351082	-	150	197284201	-	PMI0294	-	hypothetical protein
287	 21.21	-2	351079..351903	-	274	197284202	-	PMI0295	-	hypothetical protein
288	 28.07	-2	352544..352828	+	94	197284203	-	PMI0296	-	fimbrial operon regulator
289	 32.44	-1	352973..353533	+	186	197284204	-	PMI0297	-	fimbrial subunit
290	 36.41	0	353710..354294	+	194	197284205	-	PMI0298	-	fimbrial subunit
291	 36.77	0	354349..356877	+	842	197284206	-	PMI0299	-	fimbrial outer membrane usher protein
292	 33.73	-1	356889..357644	+	251	197284207	-	PMI0300	-	fimbrial chaperone protein
293	 32.17	-1	357676..358104	+	142	197284208	-	PMI0301	-	fimbrial protein
294	 32.40	-1	358097..358630	+	177	197284209	-	PMI0302	-	fimbrial subunit
295	 29.05	-2	358630..359166	+	178	197284210	-	PMI0303	-	fimbrial subunit
296	 32.47	-1	359179..360330	+	383	197284211	-	PMI0304	-	fimbrial adhesin
297	 30.59	-1	360449..361141	-	230	197284212	-	PMI0305	-	TetR-family transcriptional regulator
298	 41.23	0	361271..362599	-	442	197284213	potE	PMI0306	-	putrescine-ornithine antiporter
299	 39.39	0	362663..364825	-	720	197284214	speF	PMI0307	-	ornithine decarboxylase, inducible
300	 30.22	-1	366482..367252	-	256	197284215	-	PMI0308	-	hypothetical protein
301	 37.07	0	368261..368581	-	106	197284216	-	PMI0311	-	hypothetical protein
302	 23.93	-2	369084..369944	-	286	197284217	-	PMI0312	-	hypothetical protein
303	 23.75	-2	370951..371931	-	326	197284218	-	PMI0316	-	hypothetical protein
304	 37.84	0	372184..372738	+	184	197284219	-	PMI0317	-	lipoprotein
305	 37.02	0	372735..373439	+	234	197284220	-	PMI0318	-	hypothetical protein
306	 35.27	0	373458..373715	+	85	197284221	-	PMI0319	-	hypothetical protein
307	 35.06	0	373758..374336	+	192	197284222	-	PMI0320	-	hypothetical protein
308	 35.56	0	374340..374609	+	89	197284223	-	PMI0321	-	hypothetical protein
309	 39.19	0	374836..375108	+	90	197284224	-	PMI0322	-	transposase
310	 41.83	0	376247..377317	-	356	197284225	mltC	PMI0324	-	membrane-bound lytic murein transglycosylase
311	 35.90	0	377380..377652	-	90	197284226	yggX	PMI0325	-	probable Fe(2+) trafficking protein
312	 41.31	0	377683..378723	-	346	197284227	mutY	PMI0326	-	A/G-specific adenine glycosylase
313	 41.81	0	378939..379658	+	239	197284228	trmB	PMI0327	-	tRNA (guanine-N(7)-)-methyltransferase
314	 39.45	0	379658..379984	+	108	197284229	-	PMI0328	-	hypothetical protein
315	 40.45	0	380061..380987	+	308	197284230	glsA	PMI0329	-	glutaminase
316	 38.75	0	381059..381796	+	245	197284231	-	PMI0330	-	hypothetical protein
317	 37.75	0	381944..382894	+	316	197284232	-	PMI0331	-	ABC transporter, substrate-binding protein
318	 40.32	0	382997..384127	-	376	197284233	yggW	PMI0332	-	oxygen-independent coproporphyrinogen III oxidase
319	 42.09	0	384120..384713	-	197	197284234	-	PMI0333	-	hydrolase
320	 38.48	0	384724..385287	-	187	197284235	-	PMI0334	-	hypothetical protein
321	 42.12	0	385306..386124	-	272	197284236	proC	PMI0335	-	pyrroline-5-carboxylate reductase
322	 40.77	0	386143..386841	-	232	197284237	-	PMI0336	-	amino acid racemase
323	 39.94	0	386869..387882	+	337	197284238	-	PMI0337	-	type II/IV secretion system protein
324	 43.10	0	387879..388298	-	139	197284239	-	PMI0338	-	holliday junction resolvase
325	 40.78	0	388298..388861	-	187	197284240	-	PMI0339	-	hypothetical protein
326	 41.07	0	388974..389930	-	318	197284241	gshB	PMI0340	-	glutathione synthetase
327	 40.16	0	389941..390672	-	243	197284242	-	PMI0341	-	hypothetical protein
328	 33.18	-1	390920..391552	+	210	197284243	-	PMI0342	-	type IV prepilin-like leader peptidase
329	 39.35	0	391654..392301	-	215	197284244	-	PMI0343	-	hypothetical protein
330	 37.05	0	392307..393194	-	295	197284245	-	PMI0344	-	metallo-beta-lactamase superfamily protein
331	 42.35	0	393284..394204	+	306	197284246	-	PMI0345	-	LysR-family transcriptional regulator
332	 39.91	0	394181..395107	-	308	197284247	lysR	PMI0346	-	LysR-family transcriptional regulator
333	 41.77	0	395217..396461	+	414	197284248	lysA	PMI0347	-	diaminopimelate decarboxylase
334	 42.85	0	396595..399042	-	815	197284249	fadE	PMI0348	-	acyl-coenzyme A dehydrogenase
335	 39.55	0	399281..399859	+	192	197284250	gmhA	PMI0349	-	Phosphoheptose isomerase
336	 39.97	0	399918..400685	+	255	197284251	-	PMI0350	-	amidotransferase
337	 34.26	-1	400656..401408	-	250	197284252	-	PMI0351	-	hypothetical protein
338	 42.13	0	401824..403164	+	446	197284253	nqrA	PMI0352	-	Na(+)-translocating NADH-quinone reductase subunit A
339	 43.42	0	403168..404406	+	412	197284254	nqrB	PMI0353	-	Na(+)-translocating NADH-quinone reductase subunit B
340	 42.62	0	404399..405184	+	261	197284255	nqrC	PMI0354	-	Na+-translocating NADH-quinone reductase subunit C
341	 41.27	0	405177..405806	+	209	197284256	nqrD	PMI0355	-	Na+-translocating NADH-quinone reductase subunit D
342	 39.53	0	405812..406408	+	198	197284257	nqrE	PMI0356	-	Na+-translocating NADH-quinone reductase subunit E
343	 40.18	0	406425..407651	+	408	197284258	nqrF	PMI0357	-	Na(+)-translocating NADH-quinone reductase subunit F
344	 38.51	0	407737..408759	+	340	197284259	apbE	PMI0358	-	thiamine biosynthesis lipoprotein
345	 37.28	0	408779..409006	+	75	197284260	-	PMI0359	-	hypothetical protein
346	 36.62	0	409163..409375	-	70	197284261	-	PMI0360	-	general stress response protein
347	 38.60	0	409469..410341	-	290	197284262	-	PMI0361	-	phosphodiesterase
348	 39.58	0	410577..411632	+	351	197284263	dinB	PMI0362	-	DNA polymerase IV
349	 38.70	0	411709..413871	-	720	197284264	-	PMI0363	-	TonB-dependent ferric siderephore receptor
350	 40.60	0	414121..415578	-	485	197284265	pepD	PMI0364	-	aminoacyl-histidine dipeptidase
351	 41.77	0	415932..416393	+	153	197284266	gpt	PMI0366	-	xanthine-guanine phosphoribosyltransferase
352	 38.69	0	416626..417876	+	416	197284267	yafA	PMI0367	-	esterase
353	 36.32	0	417948..418349	+	133	197284268	crl	PMI0368	-	curlin genes transcriptional regulator
354	 43.12	0	418462..419565	+	367	197284269	proB	PMI0369	-	glutamate 5-kinase
355	 43.14	0	419577..420830	+	417	197284270	proA	PMI0370	-	gamma-glutamyl phosphate reductase
356	 34.50	-1	420975..421487	+	170	197284271	aroL	PMI0371	-	shikimate kinase
357	 40.19	0	421594..423750	+	718	197284272	aas	PMI0372	-	Aas bifunctional protein [includes: 2-acylglycerophosphoethanolamine acyltransferase and acyl-[acyl-carrier-protein] synthetase
358	 41.06	0	423750..424952	+	400	197284273	-	PMI0373	-	MFS-family transporter
359	 40.24	0	424985..425491	+	168	197284274	-	PMI0374	-	competence-damaged protein
360	 40.82	0	425599..426666	+	355	197284275	recA	PMI0375	-	protein RecA (recombinase A)
361	 40.79	0	427567..430194	+	875	197284276	alaS	PMI0376	-	alanyl-tRNA synthetase
362	 42.86	0	430412..430600	+	62	197284277	csrA	PMI0377	-	carbon storage regulator
363	 38.65	0	431843..433423	+	526	197284278	gshA	PMI0378	-	glutamate--cysteine ligase
364	 39.73	0	433589..434104	+	171	197284279	luxS	PMI0379	-	S-ribosylhomocysteine lyase (autoinducer-2 production protein)
365	 38.90	0	434235..435509	-	424	197284280	-	PMI0380	-	transporter of ion substrates
366	 38.70	0	435545..436345	-	266	197284281	-	PMI0381	-	hypothetical protein
367	 42.80	0	436518..437879	+	453	197284282	ffh	PMI0382	-	signal recognition particle protein
368	 46.59	+1	438017..438265	+	82	197284283	rpsP	PMI0383	-	30S ribosomal protein S16
369	 41.03	0	438284..438829	+	181	197284284	rimM	PMI0384	-	16S rRNA processing protein
370	 47.54	+1	438869..439621	+	250	197284285	trmD	PMI0385	-	tRNA (guanine-N1)-methyltransferase
371	 43.22	0	439674..440027	+	117	197284286	rplS	PMI0386	-	50S ribosomal subunit protein L19
372	 39.00	0	440479..441573	+	364	197284287	aroF	PMI0387	-	phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive
373	 38.22	0	441609..442733	+	374	197284288	tyrA	PMI0388	-	T-protein [includes: chorismate mutase and prephenate dehydrogenase]
374	 36.83	0	443581..444924	+	447	197284289	dcuB	PMI0389	-	anaerobic C4-dicarboxylate transporter
375	 37.65	0	445018..446175	-	385	197284290	pheA	PMI0390	-	P-protein [includes: chorismate mutase and prephenate dehydratase]
376	 34.23	-1	446485..446820	-	111	197284291	-	PMI0391	-	sigma 54 modulation protein
377	 42.18	0	447090..447824	-	244	197284292	-	PMI0392	-	lipoprotein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.