IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3120	 42.14	0	3536773..3537090	-	105	197287035	metJ	PMI3222	-	repressor of the methionine regulon
3121	 42.38	0	3537376..3538536	+	386	197287036	metB	PMI3223	-	cystathionine gamma-synthase
3122	 43.95	0	3538546..3540984	+	812	197287037	metL	PMI3224	-	bifunctional aspartokinase/homoserine dehydrogenase II [includes: aspartokinase II and homoserine dehydrogenase II]
3123	 35.45	0	3541107..3541625	+	172	197287038	-	PMI3225	-	hypothetical protein
3124	 33.33	-1	3541704..3541865	+	53	197287039	-	PMI3226	-	hypothetical protein
3125	 42.97	0	3542338..3544974	+	878	197287040	ppc	PMI3227	-	phosphoenolpyruvate carboxylase
3126	 39.23	0	3545031..3546014	-	327	197287041	-	PMI3228	-	glycosyl transferase
3127	 41.93	0	3546054..3547484	-	476	197287042	phrB	PMI3229	-	deoxyribodipyrimidine photolyase
3128	 40.98	0	3547495..3548997	-	500	197287043	proP	PMI3230	-	proline/betaine transporter (MFS-family transporter)
3129	 36.88	0	3549766..3550779	+	337	197287044	cysB	PMI3231	-	cys regulon transcriptional activator ( LysR-family transcriptional regulator)
3130	 39.42	0	3550855..3552036	-	393	197287045	-	PMI3232	-	amidohydrolase/metallopeptidase
3131	 33.78	-1	3552036..3552485	-	149	197287046	-	PMI3233	-	hypothetical protein
3132	 36.98	0	3552482..3553303	-	273	197287047	-	PMI3234	-	hypothetical protein
3133	 43.30	0	3553868..3555592	+	574	197287048	poxB	PMI3235	-	pyruvate dehydrogenase [cytochrome]
3134	 42.78	0	3555684..3556847	-	387	197287049	argE	PMI3236	-	acetylornithine deacetylase
3135	 44.38	0	3556948..3557952	+	334	197287050	argC	PMI3237	-	N-acetyl-gamma-glutamyl-phosphate reductase
3136	 42.25	0	3557973..3558746	+	257	197287051	argB	PMI3238	-	acetylglutamate kinase
3137	 44.14	0	3558811..3560022	+	403	197287052	argG	PMI3239	-	argininosuccinate synthase
3138	 42.52	0	3560115..3561497	+	460	197287053	argH	PMI3240	-	argininosuccinate lyase
3139	 41.39	0	3561732..3562649	+	305	197287054	oxyR	PMI3241	-	hydrogen peroxide-inducible genes activator (LysR-family transcriptional regulator)
3140	 43.20	0	3562641..3564038	-	465	197287055	sthA	PMI3242	-	soluble pyridine nucleotide transhydrogenase
3141	 40.53	0	3564239..3564919	+	226	197287056	-	PMI3243	-	TetR-family transcriptional regulatory
3142	 35.57	0	3564919..3565320	+	133	197287057	-	PMI3244	-	hypothetical protein
3143	 38.62	0	3565442..3566539	-	365	197287058	trmA	PMI3245	-	tRNA (uracil-5)-methyltransferase
3144	 37.97	0	3566925..3568778	+	617	197287059	btuB	PMI3246	-	vitamin B12 transporter (TonB-dependent receptor)
3145	 41.87	0	3568723..3569589	+	288	197287060	murI	PMI3247	-	glutamate racemase
3146	 37.87	0	3575840..3576874	+	344	197287061	murB	PMI3248	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3147	 39.56	0	3576871..3577833	+	320	197287062	birA	PMI3249	-	BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-coa-carboxylase] synthetase]
3148	 36.50	0	3577966..3578913	-	315	197287063	coaA	PMI3250	-	pantothenate kinase
3149	 45.15	+1	3579887..3581071	+	394	197287064	tufB	PMI3251	-	elongation factor Tu
3150	 34.85	0	3581274..3581471	+	65	197287065	bfd	PMI3252	-	bacterioferritin-associated ferredoxin
3151	 36.08	0	3581549..3582022	+	157	197287066	bfr	PMI3253	-	bacterioferritin
3152	 49.36	+1	3582388..3582699	+	103	197287067	rpsJ	PMI3254	-	30S ribosomal protein S10
3153	 46.51	+1	3582732..3583361	+	209	197287068	rplC	PMI3255	-	50S ribosomal protein L3
3154	 47.19	+1	3583378..3583983	+	201	197287069	rplD	PMI3256	-	50S ribosomal protein L4
3155	 46.86	+1	3583980..3584282	+	100	197287070	rplW	PMI3257	-	50S ribosomal protein L23
3156	 47.27	+1	3584302..3585126	+	274	197287071	rplB	PMI3258	-	50S ribosomal protein L2
3157	 46.95	+1	3585141..3585419	+	92	197287072	rpsS	PMI3259	-	30S ribosomal protein S19
3158	 48.35	+1	3585434..3585766	+	110	197287073	rplV	PMI3260	-	50S ribosomal protein L22
3159	 47.15	+1	3585784..3586485	+	233	197287074	rpsC	PMI3261	-	30S ribosomal protein S3
3160	 48.66	+1	3586498..3586908	+	136	197287075	rplP	PMI3262	-	50S ribosomal protein L16
3161	 46.88	+1	3586908..3587099	+	63	197287076	rpmC	PMI3263	-	50S ribosomal protein L29
3162	 41.18	0	3587099..3587353	+	84	197287077	rpsQ	PMI3264	-	30S ribosomal protein S17
3163	 46.24	+1	3587530..3587901	+	123	197287078	rplN	PMI3265	-	50S ribosomal protein L14
3164	 40.95	0	3587912..3588226	+	104	197287079	rplX	PMI3266	-	50S ribosomal protein L24
3165	 46.67	+1	3588240..3588779	+	179	197287080	rplE	PMI3267	-	50S ribosomal protein L5
3166	 47.39	+1	3588792..3589097	+	101	197287081	rpsN	PMI3268	-	30S ribosomal protein S14
3167	 46.56	+1	3589130..3589522	+	130	197287082	rpsH	PMI3269	-	30S ribosomal protein S8
3168	 46.25	+1	3589537..3590070	+	177	197287083	rplF	PMI3270	-	50S ribosomal protein L6
3169	 49.44	+1	3590080..3590433	+	117	197287084	rplR	PMI3271	-	50S ribosomal protein L18
3170	 48.10	+1	3590448..3590948	+	166	197287085	rpsE	PMI3272	-	30S ribosomal protein S5
3171	 43.89	0	3590954..3591133	+	59	197287086	rpmD	PMI3273	-	50S ribosomal protein L30
3172	 47.59	+1	3591137..3591571	+	144	197287087	rplO	PMI3274	-	50S ribosomal protein L15
3173	 43.24	0	3591579..3592901	+	440	197287088	secY	PMI3275	-	preprotein translocase SecY subunit
3174	 46.15	+1	3592946..3593062	+	38	197287089	rpmJ	PMI3276	-	50S ribosomal protein L36
3175	 46.22	+1	3593207..3593563	+	118	197287090	rpsM	PMI3277	-	30S ribosomal protein S13
3176	 47.44	+1	3593580..3593969	+	129	197287091	rpsK	PMI3278	-	30S ribosomal protein S11
3177	 46.05	+1	3594006..3594626	+	206	197287092	rpsD	PMI3279	-	30S ribosomal protein S4
3178	 48.08	+1	3594652..3595641	+	329	197287093	rpoA	PMI3280	-	DNA-directed RNA polymerase alpha chain
3179	 49.61	+2	3595679..3596065	+	128	197287094	rplQ	PMI3281	-	50S ribosomal protein L17
3180	 37.20	0	3596328..3596741	+	137	197287095	zntR	PMI3282	-	Zn(II)-responsive regulator of zntA (MerR-family transcriptional regulator)
3181	 35.78	0	3596802..3597005	+	67	197287096	-	PMI3283	-	hypothetical protein
3182	 36.52	0	3597009..3597416	-	135	197287097	mscL	PMI3284	-	large-conductance mechanosensitive channel
3183	 41.10	0	3597523..3598899	-	458	197287098	trkA	PMI3285	-	trk system potassium uptake protein
3184	 40.98	0	3599012..3600280	-	422	197287099	rsmB	PMI3286	-	ribosomal RNA small subunit methyltransferase B
3185	 40.17	0	3600377..3601327	-	316	197287100	fmt	PMI3287	-	methionyl-tRNA formyltransferase
3186	 40.70	0	3601354..3601869	-	171	197287101	fms	PMI3288	-	polypeptide deformylase
3187	 37.47	0	3602001..3603161	+	386	197287102	smf	PMI3289	-	hypothetical protein
3188	 37.10	0	3603180..3603737	+	185	197287103	-	PMI3290	-	DNA-binding protein
3189	 40.88	0	3603730..3604299	+	189	197287104	-	PMI3291	-	RNA-binding protein
3190	 35.39	0	3604307..3605131	+	274	197287105	aroE	PMI3292	-	shikimate dehydrogenase
3191	 37.50	0	3605128..3605391	+	87	197287106	-	PMI3293	-	hypothetical protein
3192	 41.31	0	3605367..3605930	-	187	197287107	-	PMI3294	-	transferase
3193	 40.36	0	3612413..3613237	-	274	197287108	hdfR	PMI3295	-	H-NS-depdendent flhDC regulator (LysR-family transcriptional regulator)
3194	 40.41	0	3613353..3613691	+	112	197287109	-	PMI3296	-	hypothetical protein
3195	 36.99	0	3613739..3615271	-	510	197287110	-	PMI3297	-	magnesium-chelatase
3196	 43.14	0	3615716..3615817	+	33	197287111	ilvL	PMI3298	-	ilvGMEDA operon leader peptide
3197	 43.58	0	3615947..3617596	+	549	197287112	ilvG	PMI3299	-	Acetolactate synthase isozyme II large subunit
3198	 35.84	0	3617593..3617871	+	92	197287113	ilvM	PMI3300	-	acetolactate synthase isozyme II small subunit
3199	 43.15	0	3617882..3618808	+	308	197287114	ilvE	PMI3301	-	branched-chain amino acid aminotransferase
3200	 43.92	0	3618881..3620731	+	616	197287115	ilvD	PMI3302	-	dihydroxy-acid dehydratase
3201	 44.13	0	3620735..3622309	+	524	197287116	ilvA	PMI3303	-	threonine dehydratase biosynthetic
3202	 45.16	+1	3622295..3623182	-	295	197287117	ilvY	PMI3304	-	LysR-family transcriptional regulator
3203	 43.43	0	3623355..3624830	+	491	197287118	ilvC	PMI3305	-	ketol-acid reductoisomerase
3204	 43.17	0	3625058..3625474	-	138	197287119	-	PMI3306	-	transposase
3205	 47.39	+1	3625497..3626705	+	402	197287120	-	PMI3307	-	transposase
3206	 32.57	-1	3626837..3627097	-	86	197287121	-	PMI3308	-	plasmid stability protein
3207	 31.73	-1	3627107..3627355	-	82	197287122	-	PMI3309	-	plasmid-related protein
3208	 40.85	0	3627528..3629549	+	673	197287123	rep	PMI3310	-	ATP-dependent DNA helicase
3209	 43.01	0	3629624..3631132	-	502	197287124	gppA	PMI3311	-	guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
3210	 41.11	0	3631136..3632434	-	432	197287125	rhlB	PMI3312	-	ATP-dependent RNA helicase
3211	 40.67	0	3632554..3632880	+	108	197287126	trxA	PMI3313	-	thioredoxin
3212	 40.87	0	3633442..3634701	+	419	197287127	rho	PMI3314	-	transcription termination factor Rho
3213	 28.07	-2	3634895..3635065	+	56	197287128	-	PMI3315	-	hypothetical protein
3214	 40.11	0	3635096..3636187	+	363	197287129	wecA	PMI3316	-	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase
3215	 41.15	0	3636208..3637269	+	353	197287130	wzzE	PMI3317	-	lipopolysaccharide biosynthesis protein
3216	 41.82	0	3637399..3638529	+	376	197287131	rffE	PMI3318	-	UDP-N-acetylglucosamine 2-epimerase
3217	 42.36	0	3638526..3639788	+	420	197287132	rffD	PMI3319	-	UDP-N-acetyl-D-mannosamine dehydrogenase
3218	 42.46	0	3639779..3640852	+	357	197287133	rffG	PMI3320	-	dTDP-D-glucose-4,6-dehydratase
3219	 42.26	0	3640868..3641752	+	294	197287134	rffH	PMI3321	-	glucose-1-phosphate thymidylyltransferase
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.