IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3078	 41.51	0	3492675..3493640	-	321	197286993	-	PMI3179	-	exported polysaccharide deacetylase
3079	 46.17	+1	3493643..3494935	-	430	197286994	-	PMI3180	-	exported peptidase
3080	 41.67	0	3495155..3496486	-	443	197286995	-	PMI3181	-	hypothetical protein
3081	 38.36	0	3496843..3497280	+	145	197286996	-	PMI3182	-	rhodanese-like protein
3082	 39.24	0	3497351..3497824	+	157	197286997	secB	PMI3183	-	protein-export protein
3083	 45.66	+1	3497824..3498837	+	337	197286998	gpsA	PMI3184	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
3084	 46.47	+1	3498949..3499770	+	273	197286999	cysE	PMI3185	-	serine acetyltransferase
3085	 40.00	0	3499773..3500327	+	184	197287000	-	PMI3186	-	serine acetyltransferase
3086	 43.25	0	3500457..3500960	-	167	197287001	-	PMI3187	-	methyltransferase
3087	 33.83	-1	3500964..3501974	-	336	197287002	wbnF	PMI3188	-	nucleotide sugar epimerase
3088	 35.30	0	3502000..3503166	-	388	197287003	ugd	PMI3189	-	UDP-glucose 6-dehydrogenase
3089	 28.48	-2	3503181..3504293	-	370	197287004	cpsF	PMI3190	-	glycosyl transferase
3090	 23.85	-2	3504328..3505497	-	389	197287005	-	PMI3191	-	glycosyl transferase
3091	 23.43	-2	3505472..3506662	-	396	197287006	wzy	PMI3192	-	O antigen polysaccharide unit polymerase
3092	 25.32	-2	3506656..3507828	-	390	197287007	-	PMI3193	-	O antigen biosynthesis protein
3093	 23.10	-2	3507798..3509018	-	406	197287008	-	PMI3194	-	flippase
3094	 26.05	-2	3509018..3509800	-	260	197287009	-	PMI3195	-	glycosyl transferase
3095	 28.28	-2	3510410..3511399	+	329	197287010	-	PMI3196	-	glycosyl transferase
3096	 27.29	-2	3511411..3512304	-	297	197287011	-	PMI3197	-	O antigen biosynthesis protein
3097	 44.30	0	3512374..3513741	-	455	197287012	cpxA	PMI3198	-	two-component system sensor kinase
3098	 42.49	0	3513754..3514452	-	232	197287013	cpxR	PMI3199	-	two component system response regulator
3099	 40.74	0	3514636..3515202	+	188	197287014	cpxP	PMI3200	-	periplasmic protein
3100	 36.54	0	3515773..3516084	+	103	197287015	-	PMI3201	-	DNA-binding protein
3101	 43.12	0	3516230..3516985	-	251	197287016	-	PMI3202	-	probable short chain dehydrogenase
3102	 43.76	0	3517519..3518496	+	325	197287017	pfkA	PMI3203	-	6-phosphofructokinase
3103	 42.29	0	3518791..3519795	+	334	197287018	sbp	PMI3204	-	sulfate-binding protein (sulfate starvation-induced protein)
3104	 43.58	0	3519891..3520661	-	256	197287019	tpiA	PMI3205	-	triosephosphate isomerase
3105	 39.62	0	3520768..3521403	-	211	197287020	-	PMI3206	-	hypothetical protein
3106	 42.19	0	3521515..3521943	+	142	197287021	-	PMI3207	-	hypothetical protein
3107	 42.57	0	3522004..3522750	-	248	197287022	fpr	PMI3208	-	ferredoxin--NADP reductase
3108	 44.30	0	3523089..3524273	+	394	197287023	emrD	PMI3209	-	multidrug resistance protein D (MFS-family transporter)
3109	 45.08	+1	3524383..3525915	-	510	197287024	glpK	PMI3210	-	glycerol kinase
3110	 44.49	0	3525958..3526773	-	271	197287025	glpF	PMI3211	-	glycerol uptake facilitator protein
3111	 38.27	0	3527070..3527312	+	80	197287026	-	PMI3212	-	hypothetical protein
3112	 41.62	0	3527406..3527924	-	172	197287027	rraA	PMI3213	-	regulator of ribonuclease activity
3113	 43.79	0	3528033..3528950	-	305	197287028	menA	PMI3214	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3114	 42.58	0	3529049..3530389	-	446	197287029	hslU	PMI3215	-	ATP-dependent Hsl protease, ATP-binding subunit
3115	 45.01	+1	3530402..3530932	-	176	197287030	hslV	PMI3216	-	ATP-dependent protease HslV (heat shock protein)
3116	 48.43	+1	3531043..3531837	-	264	197287031	ftsN	PMI3217	-	cell division protein
3117	 41.47	0	3531908..3532939	-	343	197287032	cytR	PMI3218	-	LacI-family transcriptional regulator
3118	 44.28	0	3533192..3535393	-	733	197287033	priA	PMI3219	-	primosomal protein n'
3119	 39.91	0	3535597..3535809	+	70	197287034	rpmE	PMI3220	-	50S ribosomal protein L31
3120	 42.14	0	3536773..3537090	-	105	197287035	metJ	PMI3222	-	repressor of the methionine regulon
3121	 42.38	0	3537376..3538536	+	386	197287036	metB	PMI3223	-	cystathionine gamma-synthase
3122	 43.95	0	3538546..3540984	+	812	197287037	metL	PMI3224	-	bifunctional aspartokinase/homoserine dehydrogenase II [includes: aspartokinase II and homoserine dehydrogenase II]
3123	 35.45	0	3541107..3541625	+	172	197287038	-	PMI3225	-	hypothetical protein
3124	 33.33	-1	3541704..3541865	+	53	197287039	-	PMI3226	-	hypothetical protein
3125	 42.97	0	3542338..3544974	+	878	197287040	ppc	PMI3227	-	phosphoenolpyruvate carboxylase
3126	 39.23	0	3545031..3546014	-	327	197287041	-	PMI3228	-	glycosyl transferase
3127	 41.93	0	3546054..3547484	-	476	197287042	phrB	PMI3229	-	deoxyribodipyrimidine photolyase
3128	 40.98	0	3547495..3548997	-	500	197287043	proP	PMI3230	-	proline/betaine transporter (MFS-family transporter)
3129	 36.88	0	3549766..3550779	+	337	197287044	cysB	PMI3231	-	cys regulon transcriptional activator ( LysR-family transcriptional regulator)
3130	 39.42	0	3550855..3552036	-	393	197287045	-	PMI3232	-	amidohydrolase/metallopeptidase
3131	 33.78	-1	3552036..3552485	-	149	197287046	-	PMI3233	-	hypothetical protein
3132	 36.98	0	3552482..3553303	-	273	197287047	-	PMI3234	-	hypothetical protein
3133	 43.30	0	3553868..3555592	+	574	197287048	poxB	PMI3235	-	pyruvate dehydrogenase [cytochrome]
3134	 42.78	0	3555684..3556847	-	387	197287049	argE	PMI3236	-	acetylornithine deacetylase
3135	 44.38	0	3556948..3557952	+	334	197287050	argC	PMI3237	-	N-acetyl-gamma-glutamyl-phosphate reductase
3136	 42.25	0	3557973..3558746	+	257	197287051	argB	PMI3238	-	acetylglutamate kinase
3137	 44.14	0	3558811..3560022	+	403	197287052	argG	PMI3239	-	argininosuccinate synthase
3138	 42.52	0	3560115..3561497	+	460	197287053	argH	PMI3240	-	argininosuccinate lyase
3139	 41.39	0	3561732..3562649	+	305	197287054	oxyR	PMI3241	-	hydrogen peroxide-inducible genes activator (LysR-family transcriptional regulator)
3140	 43.20	0	3562641..3564038	-	465	197287055	sthA	PMI3242	-	soluble pyridine nucleotide transhydrogenase
3141	 40.53	0	3564239..3564919	+	226	197287056	-	PMI3243	-	TetR-family transcriptional regulatory
3142	 35.57	0	3564919..3565320	+	133	197287057	-	PMI3244	-	hypothetical protein
3143	 38.62	0	3565442..3566539	-	365	197287058	trmA	PMI3245	-	tRNA (uracil-5)-methyltransferase
3144	 37.97	0	3566925..3568778	+	617	197287059	btuB	PMI3246	-	vitamin B12 transporter (TonB-dependent receptor)
3145	 41.87	0	3568723..3569589	+	288	197287060	murI	PMI3247	-	glutamate racemase
3146	 37.87	0	3575840..3576874	+	344	197287061	murB	PMI3248	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3147	 39.56	0	3576871..3577833	+	320	197287062	birA	PMI3249	-	BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-coa-carboxylase] synthetase]
3148	 36.50	0	3577966..3578913	-	315	197287063	coaA	PMI3250	-	pantothenate kinase
3149	 45.15	+1	3579887..3581071	+	394	197287064	tufB	PMI3251	-	elongation factor Tu
3150	 34.85	0	3581274..3581471	+	65	197287065	bfd	PMI3252	-	bacterioferritin-associated ferredoxin
3151	 36.08	0	3581549..3582022	+	157	197287066	bfr	PMI3253	-	bacterioferritin
3152	 49.36	+1	3582388..3582699	+	103	197287067	rpsJ	PMI3254	-	30S ribosomal protein S10
3153	 46.51	+1	3582732..3583361	+	209	197287068	rplC	PMI3255	-	50S ribosomal protein L3
3154	 47.19	+1	3583378..3583983	+	201	197287069	rplD	PMI3256	-	50S ribosomal protein L4
3155	 46.86	+1	3583980..3584282	+	100	197287070	rplW	PMI3257	-	50S ribosomal protein L23
3156	 47.27	+1	3584302..3585126	+	274	197287071	rplB	PMI3258	-	50S ribosomal protein L2
3157	 46.95	+1	3585141..3585419	+	92	197287072	rpsS	PMI3259	-	30S ribosomal protein S19
3158	 48.35	+1	3585434..3585766	+	110	197287073	rplV	PMI3260	-	50S ribosomal protein L22
3159	 47.15	+1	3585784..3586485	+	233	197287074	rpsC	PMI3261	-	30S ribosomal protein S3
3160	 48.66	+1	3586498..3586908	+	136	197287075	rplP	PMI3262	-	50S ribosomal protein L16
3161	 46.88	+1	3586908..3587099	+	63	197287076	rpmC	PMI3263	-	50S ribosomal protein L29
3162	 41.18	0	3587099..3587353	+	84	197287077	rpsQ	PMI3264	-	30S ribosomal protein S17
3163	 46.24	+1	3587530..3587901	+	123	197287078	rplN	PMI3265	-	50S ribosomal protein L14
3164	 40.95	0	3587912..3588226	+	104	197287079	rplX	PMI3266	-	50S ribosomal protein L24
3165	 46.67	+1	3588240..3588779	+	179	197287080	rplE	PMI3267	-	50S ribosomal protein L5
3166	 47.39	+1	3588792..3589097	+	101	197287081	rpsN	PMI3268	-	30S ribosomal protein S14
3167	 46.56	+1	3589130..3589522	+	130	197287082	rpsH	PMI3269	-	30S ribosomal protein S8
3168	 46.25	+1	3589537..3590070	+	177	197287083	rplF	PMI3270	-	50S ribosomal protein L6
3169	 49.44	+1	3590080..3590433	+	117	197287084	rplR	PMI3271	-	50S ribosomal protein L18
3170	 48.10	+1	3590448..3590948	+	166	197287085	rpsE	PMI3272	-	30S ribosomal protein S5
3171	 43.89	0	3590954..3591133	+	59	197287086	rpmD	PMI3273	-	50S ribosomal protein L30
3172	 47.59	+1	3591137..3591571	+	144	197287087	rplO	PMI3274	-	50S ribosomal protein L15
3173	 43.24	0	3591579..3592901	+	440	197287088	secY	PMI3275	-	preprotein translocase SecY subunit
3174	 46.15	+1	3592946..3593062	+	38	197287089	rpmJ	PMI3276	-	50S ribosomal protein L36
3175	 46.22	+1	3593207..3593563	+	118	197287090	rpsM	PMI3277	-	30S ribosomal protein S13
3176	 47.44	+1	3593580..3593969	+	129	197287091	rpsK	PMI3278	-	30S ribosomal protein S11
3177	 46.05	+1	3594006..3594626	+	206	197287092	rpsD	PMI3279	-	30S ribosomal protein S4
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.