IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3020	 35.92	0	3427878..3428765	+	295	197286935	-	PMI3117	-	LysR-family transcriptional regulator
3021	 39.95	0	3429180..3429980	+	266	197286936	-	PMI3118	-	hypothetical protein
3022	 29.49	-2	3430155..3431507	+	450	197286937	-	PMI3119	-	hypothetical protein
3023	 35.61	0	3431552..3434629	+	1025	197286938	-	PMI3120	-	TonB-dependent receptor
3024	 40.17	0	3434657..3435460	+	267	197286939	-	PMI3121	-	TonB-like protein
3025	 34.81	0	3435514..3437475	-	653	197286940	-	PMI3122	-	hypothetical protein
3026	 38.39	0	3437507..3438436	-	309	197286941	-	PMI3123	-	phosphoesterase
3027	 40.86	0	3438621..3439085	-	154	197286942	-	PMI3124	-	hypothetical protein
3028	 36.30	0	3439488..3440801	-	437	197286943	hipA	PMI3125	-	regulatory protein
3029	 35.27	0	3440802..3441059	-	85	197286944	hipB	PMI3126	-	transcriptional regulator
3030	 45.71	+1	3441208..3442572	-	454	197286945	trmE	PMI3127	-	probable tRNA modification GTPase
3031	 41.01	0	3442710..3444350	-	546	197286946	oxaA	PMI3128	-	inner membrane protein
3032	 44.06	0	3444353..3444613	-	86	197286947	-	PMI3129	-	hypothetical protein
3033	 44.44	0	3444577..3444936	-	119	197286948	rnpA	PMI3130	-	ribonuclease P protein component
3034	 54.17	+2	3444954..3445097	-	47	197286949	rpmH	PMI3131	-	50s ribosomal protein l34
3035	 42.04	0	3445820..3447220	+	466	197286950	dnaA	PMI3132	-	chromosomal replication initiator protein
3036	 43.39	0	3447225..3448328	+	367	197286951	dnaN	PMI3133	-	DNA polymerase III beta subunit
3037	 41.78	0	3448340..3449428	+	362	197286952	recF	PMI3134	-	dna replication and repair protein
3038	 42.40	0	3449449..3451863	+	804	197286953	gyrB	PMI3135	-	DNA gyrase subunit B
3039	 43.54	0	3451943..3453049	-	368	197286954	asd	PMI3136	-	aspartate-semialdehyde dehydrogenase
3040	 35.46	0	3453549..3454112	+	187	197286955	-	PMI3137	-	methyltransferase
3041	 43.00	0	3454388..3455287	+	299	197286956	-	PMI3138	-	phosphosugar binding/isomerase
3042	 42.03	0	3455806..3455943	+	45	197286957	-	PMI3140	-	transposase
3043	 34.61	-1	3456453..3458798	-	781	197286958	-	PMI3141	-	restriction endonuclease
3044	 31.12	-1	3458799..3460334	-	511	197286959	-	PMI3142	-	DNA modification methyltransferase
3045	 35.16	0	3460331..3461587	-	418	197286960	-	PMI3143	-	DNA modification methyltransferase
3046	 38.80	0	3461648..3461830	-	60	197286961	-	PMI3144	-	excisionase
3047	 38.25	0	3461951..3462133	+	60	197286962	-	PMI3145	-	hypothetical protein
3048	 37.01	0	3462173..3463177	+	334	197286963	-	PMI3146	-	integrase
3049	 41.67	0	3463905..3464768	-	287	197286964	-	PMI3150	-	hypothetical protein
3050	 46.03	+1	3464895..3465611	+	238	197286965	rph	PMI3151	-	ribonuclease PH
3051	 39.07	0	3465693..3466337	+	214	197286966	pyrE	PMI3152	-	orotate phosphoribosyltransferase
3052	 40.76	0	3466656..3467261	-	201	197286967	slmA	PMI3153	-	TetR-family transcriptional regulator
3053	 45.39	+1	3467381..3467836	-	151	197286968	dut	PMI3154	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
3054	 45.33	+1	3467823..3469031	-	402	197286969	coaBC	PMI3155	-	coenzyme A biosynthesis bifunctional protein [includes: phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase]
3055	 38.69	0	3469339..3470010	+	223	197286970	radC	PMI3156	-	DNA repair protein
3056	 48.52	+1	3470258..3470494	+	78	197286971	rpmB	PMI3157	-	50S ribosomal protein L28
3057	 36.31	0	3470506..3470673	+	55	197286972	rpmG	PMI3158	-	50S ribosomal rotein L33
3058	 42.11	0	3470823..3471950	+	375	197286973	-	PMI3159	-	glycosyl transferase
3059	 41.82	0	3472089..3473090	+	333	197286974	-	PMI3160	-	glycosyl transferase
3060	 43.45	0	3473094..3474200	+	368	197286975	-	PMI3161	-	glycosyl transferase
3061	 41.07	0	3474200..3475375	+	391	197286976	-	PMI3162	-	glycosyl transferase
3062	 36.72	0	3475368..3476636	-	422	197286977	rfaL	PMI3163	-	O-antigen ligase
3063	 42.55	0	3476758..3477582	+	274	197286978	mutM	PMI3164	-	formamidopyrimidine-DNA glycosylase
3064	 43.62	0	3477579..3478064	-	161	197286979	coaD	PMI3165	-	phosphopantetheine adenylyltransferase
3065	 40.51	0	3478054..3478833	-	259	197286980	waaE	PMI3166	-	lipopolysaccharide core biosynthesis glycosyl transferase
3066	 46.17	+1	3478833..3480110	-	425	197286981	waaA	PMI3167	-	KDO transferase
3067	 37.65	0	3480328..3481392	+	354	197286982	waaQ	PMI3168	-	lipopolysaccharide core biosynthesis glycosyl transferase
3068	 40.94	0	3481389..3482519	+	376	197286983	wabG	PMI3169	-	lipopolysaccharide core biosynthesis glycosyl transferase
3069	 34.88	0	3482516..3483613	+	365	197286984	wabH	PMI3170	-	lipopolysaccharide core biosynthesis glycosyl transferase
3070	 38.01	0	3483650..3484612	+	320	197286985	-	PMI3171	-	lipopolysaccharide core biosynthesis protein
3071	 34.93	0	3484614..3485675	+	353	197286986	-	PMI3172	-	lipopolysaccharide core biosynthesis glycosyl transferase
3072	 21.89	-2	3485702..3486610	-	302	197286987	-	PMI3173	-	glycosyltransferase
3073	 46.11	+1	3486674..3487636	-	320	197286988	waaC	PMI3174	-	lipopolysaccharide heptosyltransferase 1
3074	 45.49	+1	3487633..3488685	-	350	197286989	waaF	PMI3175	-	ADP-heptose--LPS heptosyltransferase II
3075	 40.04	0	3488695..3489633	-	312	197286990	waaD	PMI3176	-	ADP-L-glycero-D-manno-heptose-6-epimerase
3076	 43.58	0	3489901..3491100	+	399	197286991	kbl	PMI3177	-	2-amino-3-ketobutyrate coenzyme A ligase
3077	 43.08	0	3491110..3492135	+	341	197286992	tdh	PMI3178	-	L-threonine 3-dehydrogenase
3078	 41.51	0	3492675..3493640	-	321	197286993	-	PMI3179	-	exported polysaccharide deacetylase
3079	 46.17	+1	3493643..3494935	-	430	197286994	-	PMI3180	-	exported peptidase
3080	 41.67	0	3495155..3496486	-	443	197286995	-	PMI3181	-	hypothetical protein
3081	 38.36	0	3496843..3497280	+	145	197286996	-	PMI3182	-	rhodanese-like protein
3082	 39.24	0	3497351..3497824	+	157	197286997	secB	PMI3183	-	protein-export protein
3083	 45.66	+1	3497824..3498837	+	337	197286998	gpsA	PMI3184	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
3084	 46.47	+1	3498949..3499770	+	273	197286999	cysE	PMI3185	-	serine acetyltransferase
3085	 40.00	0	3499773..3500327	+	184	197287000	-	PMI3186	-	serine acetyltransferase
3086	 43.25	0	3500457..3500960	-	167	197287001	-	PMI3187	-	methyltransferase
3087	 33.83	-1	3500964..3501974	-	336	197287002	wbnF	PMI3188	-	nucleotide sugar epimerase
3088	 35.30	0	3502000..3503166	-	388	197287003	ugd	PMI3189	-	UDP-glucose 6-dehydrogenase
3089	 28.48	-2	3503181..3504293	-	370	197287004	cpsF	PMI3190	-	glycosyl transferase
3090	 23.85	-2	3504328..3505497	-	389	197287005	-	PMI3191	-	glycosyl transferase
3091	 23.43	-2	3505472..3506662	-	396	197287006	wzy	PMI3192	-	O antigen polysaccharide unit polymerase
3092	 25.32	-2	3506656..3507828	-	390	197287007	-	PMI3193	-	O antigen biosynthesis protein
3093	 23.10	-2	3507798..3509018	-	406	197287008	-	PMI3194	-	flippase
3094	 26.05	-2	3509018..3509800	-	260	197287009	-	PMI3195	-	glycosyl transferase
3095	 28.28	-2	3510410..3511399	+	329	197287010	-	PMI3196	-	glycosyl transferase
3096	 27.29	-2	3511411..3512304	-	297	197287011	-	PMI3197	-	O antigen biosynthesis protein
3097	 44.30	0	3512374..3513741	-	455	197287012	cpxA	PMI3198	-	two-component system sensor kinase
3098	 42.49	0	3513754..3514452	-	232	197287013	cpxR	PMI3199	-	two component system response regulator
3099	 40.74	0	3514636..3515202	+	188	197287014	cpxP	PMI3200	-	periplasmic protein
3100	 36.54	0	3515773..3516084	+	103	197287015	-	PMI3201	-	DNA-binding protein
3101	 43.12	0	3516230..3516985	-	251	197287016	-	PMI3202	-	probable short chain dehydrogenase
3102	 43.76	0	3517519..3518496	+	325	197287017	pfkA	PMI3203	-	6-phosphofructokinase
3103	 42.29	0	3518791..3519795	+	334	197287018	sbp	PMI3204	-	sulfate-binding protein (sulfate starvation-induced protein)
3104	 43.58	0	3519891..3520661	-	256	197287019	tpiA	PMI3205	-	triosephosphate isomerase
3105	 39.62	0	3520768..3521403	-	211	197287020	-	PMI3206	-	hypothetical protein
3106	 42.19	0	3521515..3521943	+	142	197287021	-	PMI3207	-	hypothetical protein
3107	 42.57	0	3522004..3522750	-	248	197287022	fpr	PMI3208	-	ferredoxin--NADP reductase
3108	 44.30	0	3523089..3524273	+	394	197287023	emrD	PMI3209	-	multidrug resistance protein D (MFS-family transporter)
3109	 45.08	+1	3524383..3525915	-	510	197287024	glpK	PMI3210	-	glycerol kinase
3110	 44.49	0	3525958..3526773	-	271	197287025	glpF	PMI3211	-	glycerol uptake facilitator protein
3111	 38.27	0	3527070..3527312	+	80	197287026	-	PMI3212	-	hypothetical protein
3112	 41.62	0	3527406..3527924	-	172	197287027	rraA	PMI3213	-	regulator of ribonuclease activity
3113	 43.79	0	3528033..3528950	-	305	197287028	menA	PMI3214	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3114	 42.58	0	3529049..3530389	-	446	197287029	hslU	PMI3215	-	ATP-dependent Hsl protease, ATP-binding subunit
3115	 45.01	+1	3530402..3530932	-	176	197287030	hslV	PMI3216	-	ATP-dependent protease HslV (heat shock protein)
3116	 48.43	+1	3531043..3531837	-	264	197287031	ftsN	PMI3217	-	cell division protein
3117	 41.47	0	3531908..3532939	-	343	197287032	cytR	PMI3218	-	LacI-family transcriptional regulator
3118	 44.28	0	3533192..3535393	-	733	197287033	priA	PMI3219	-	primosomal protein n'
3119	 39.91	0	3535597..3535809	+	70	197287034	rpmE	PMI3220	-	50S ribosomal protein L31
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.