IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2933	 42.88	0	3317025..3319559	-	844	197286848	mrcA	PMI3021	-	penicillin-binding protein 1A
2934	 38.42	0	3319676..3320500	+	274	197286849	-	PMI3022	-	hypothetical protein
2935	 38.17	0	3320488..3321087	+	199	197286850	-	PMI3023	-	fimbrial assembly protein
2936	 39.33	0	3321071..3321604	+	177	197286851	-	PMI3024	-	hypothetical protein
2937	 37.46	0	3321611..3322726	+	371	197286852	-	PMI3025	-	hypothetical protein
2938	 41.00	0	3323307..3323828	+	173	197286853	aroK	PMI3026	-	shikimate kinase I
2939	 41.28	0	3323881..3324975	+	364	197286854	aroB	PMI3027	-	3-dehydroquinate synthase
2940	 42.96	0	3325130..3326074	+	314	197286855	damX	PMI3028	-	hypothetical protein
2941	 37.01	0	3326156..3326971	+	271	197286856	dam	PMI3029	-	DNA adenine methylase
2942	 40.59	0	3327016..3327690	+	224	197286857	rpe	PMI3030	-	ribulose-phosphate 3-epimerase
2943	 40.65	0	3327687..3328397	+	236	197286858	gph	PMI3031	-	phosphoglycolate phosphatase
2944	 41.50	0	3328399..3329427	+	342	197286859	trpS	PMI3032	-	tryptophanyl-tRNA synthetase
2945	 47.56	+1	3329488..3330696	-	402	197286860	-	PMI3033	-	transposase
2946	 43.65	0	3330719..3331135	+	138	197286861	-	PMI3034	-	transposase
2947	 41.78	0	3331216..3331890	-	224	197286862	-	PMI3035	-	sulfur-carrier protein
2948	 38.94	0	3332008..3332631	-	207	197286863	sodA	PMI3036	-	superoxide dismutase [Mn]
2949	 43.49	0	3332999..3334957	+	652	197286864	acs	PMI3037	-	acetyl-coenzyme A synthetase
2950	 35.26	0	3335122..3335433	+	103	197286865	-	PMI3038	-	hypothetical protein
2951	 40.04	0	3335430..3337085	+	551	197286866	actP	PMI3039	-	cation/acetate symporter
2952	 32.35	-1	3337408..3339039	+	543	197286867	-	PMI3040	-	membrane-associated sulfatase
2953	 43.65	0	3339858..3340274	+	138	197286868	-	PMI3043	-	transposase
2954	 35.06	0	3340361..3341053	-	230	197286869	-	PMI3044	-	hypothetical protein
2955	 38.41	0	3341057..3342475	-	472	197286870	-	PMI3045	-	iron-sulfur cluster-binding protein
2956	 36.59	0	3342466..3343203	-	245	197286871	-	PMI3046	-	oxidoreductase (cysteine-rich protein)
2957	 35.08	0	3349328..3350014	+	228	197286872	-	PMI3047	-	GntR-family transcriptional regulator
2958	 38.84	0	3350095..3351492	+	465	197286873	-	PMI3048	-	MFS-family transporter
2959	 39.70	0	3351574..3352500	-	308	197286874	rbsK	PMI3049	-	ribokinase
2960	 34.87	0	3352781..3354280	+	499	197286875	-	PMI3050	-	ATPase
2961	 36.90	0	3354288..3355745	+	485	197286876	-	PMI3051	-	hypothetical protein
2962	 40.18	0	3355746..3356738	-	330	197286877	asnA	PMI3052	-	aspartate-ammonia ligase (asparagine synthetase A)
2963	 36.58	0	3356899..3357360	+	153	197286878	asnC	PMI3053	-	AsnC-family transcriptional regulator
2964	 42.86	0	3357461..3357901	+	146	197286879	mioC	PMI3054	-	flavoprotein involved in biotin synthesis
2965	 41.18	0	3358281..3360179	+	632	197286880	gidA	PMI3055	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme (glucose-inhibited division protein A)
2966	 37.96	0	3360176..3360802	+	208	197286881	gidB	PMI3056	-	methyltransferase (glucose-inhibited division protein B)
2967	 39.95	0	3361417..3361794	+	125	197286882	atpI	PMI3057	-	ATP synthase protein I
2968	 41.45	0	3361826..3362650	+	274	197286883	atpB	PMI3058	-	ATP synthase A chain
2969	 49.17	+1	3362696..3362935	+	79	197286884	atpE	PMI3059	-	ATP synthase C chain
2970	 43.74	0	3362997..3363467	+	156	197286885	atpF	PMI3060	-	ATP synthase B chain
2971	 44.76	+1	3363480..3364013	+	177	197286886	atpH	PMI3061	-	ATP synthase delta chain
2972	 45.85	+1	3364028..3365569	+	513	197286887	atpA	PMI3062	-	ATP synthase alpha chain
2973	 45.60	+1	3365627..3366490	+	287	197286888	atpG	PMI3063	-	ATP synthase gamma chain
2974	 46.20	+1	3366525..3367907	+	460	197286889	atpD	PMI3064	-	ATP synthase beta chain
2975	 44.36	0	3367929..3368345	+	138	197286890	atpC	PMI3065	-	ATP synthase epsilon chain
2976	 42.14	0	3368496..3369869	+	457	197286891	glmU	PMI3066	-	bifunctional protein GlmU [includes: UDP-N-acetylglucosamine pyrophosphorylase and glucosamine-1-phosphate N-acetyltransferase]
2977	 41.87	0	3370027..3371853	+	608	197286892	glmS	PMI3067	-	glucosamine--fructose-6-phosphate aminotransferase
2978	 42.26	0	3373382..3375073	+	563	197286893	-	PMI3070	-	ABC transporter permease protein
2979	 41.15	0	3375119..3376129	+	336	197286894	-	PMI3071	-	ABC transporter, substrate-binding protein
2980	 41.76	0	3376194..3377321	+	375	197286895	-	PMI3072	-	oxidoreductase
2981	 43.65	0	3377415..3377831	-	138	197286896	-	PMI3073	-	transposase
2982	 47.06	+1	3377854..3379011	+	385	197286897	-	PMI3074	-	transposase
2983	 27.16	-2	3379144..3379548	-	134	197286898	-	PMI3075	-	hypothetical protein
2984	 24.31	-2	3380226..3380513	-	95	197286899	-	PMI3078	-	hypothetical protein
2985	 43.30	0	3380602..3381414	-	270	197286900	phnX	PMI3079	-	phosphonoacetaldehyde phosphonohydrolase
2986	 39.77	0	3382289..3383422	+	377	197286901	-	PMI3080	-	amidohydrolase/metallopeptidase
2987	 38.95	0	3383432..3384838	+	468	197286902	-	PMI3081	-	C4-dicarboxylate anaerobic carrier
2988	 37.40	0	3384931..3385569	-	212	197286903	-	PMI3082	-	TetR-family transcriptional regulator
2989	 36.60	0	3385691..3386791	+	366	197286904	-	PMI3083	-	multidrug efflux protein
2990	 36.75	0	3386784..3388304	+	506	197286905	-	PMI3084	-	multidrug efflux protein (MFS-family transporter)
2991	 35.98	0	3388399..3388851	-	150	197286906	-	PMI3085	-	hypothetical protein
2992	 28.30	-2	3389033..3389707	-	224	197286907	-	PMI3086	-	fimbrial chaperone
2993	 28.79	-2	3392155..3392793	-	212	197286908	-	PMI3089	-	fimbrial subunit
2994	 35.75	0	3393078..3393740	-	220	197286909	-	PMI3090	-	fimbrial subunit
2995	 37.14	0	3394154..3394810	-	218	197286910	-	PMI3091	-	fimbrial subunit
2996	 34.38	-1	3395207..3395872	-	221	197286911	-	PMI3092	-	fimbrial subunit
2997	 36.79	0	3396170..3396574	-	134	197286912	-	PMI3093	-	hypothetical protein
2998	 36.92	0	3396723..3397307	-	194	197286913	-	PMI3094	-	hypothetical protein
2999	 39.58	0	3397402..3398313	-	303	197286914	-	PMI3095	-	ROK-family protein
3000	 28.54	-2	3399757..3400152	+	131	197286915	-	PMI3096	-	hypothetical protein
3001	 36.93	0	3400249..3402414	+	721	197286916	-	PMI3097	-	cellulose synthase catalytic subunit [UDP-forming]
3002	 40.40	0	3402417..3404765	+	782	197286917	-	PMI3098	-	cellulose biosynthesis protein B
3003	 40.74	0	3404776..3408462	+	1228	197286918	-	PMI3099	-	cellulose biosynthesis protein C
3004	 38.43	0	3408478..3408948	+	156	197286919	-	PMI3100	-	cellulose biosynthesis protein
3005	 28.92	-2	3408987..3409892	+	301	197286920	-	PMI3101	-	signaling protein
3006	 38.53	0	3410065..3411027	+	320	197286921	galU	PMI3102	-	UTP--glucose-1-phosphate uridylyltransferase
3007	 39.11	0	3411101..3412138	+	345	197286922	celY	PMI3103	-	cellulase
3008	 37.58	0	3412277..3413926	-	549	197286923	-	PMI3104	-	hypothetical protein
3009	 43.00	0	3414035..3415897	-	620	197286924	selB	PMI3105	-	selenocysteine-specific elongation factor
3010	 43.25	0	3415894..3417285	-	463	197286925	selA	PMI3106	-	L-seryl-tRNA(sec) selenium transferase
3011	 39.74	0	3417301..3418221	-	306	197286926	fdhE	PMI3107	-	formate dehydrogenase formation protein
3012	 40.94	0	3418420..3419076	-	218	197286927	fdoI	PMI3108	-	formate dehydrogenase-O gamma subunit
3013	 44.73	+1	3419073..3420011	-	312	197286928	fdoH	PMI3109	-	formate dehydrogenase-O beta subunit
3014	 43.86	0	3420023..3423070	-	1014	197286929	fdoG	PMI3110	-	formate dehydrogenase-O, major subunit
3015	 42.48	0	3423250..3424080	+	276	197286930	fdhD	PMI3112	-	formate dehydrogenase accessory protein
3016	 40.34	0	3424077..3424847	-	256	197286931	-	PMI3113	-	hypothetical protein
3017	 35.16	0	3424858..3425733	-	291	197286932	-	PMI3114	-	glycosyltransferase
3018	 41.44	0	3426025..3426567	-	180	197286933	umoA	PMI3115	-	upregulatior of flagellar operon (exported protein)
3019	 40.95	0	3426782..3427753	+	323	197286934	-	PMI3116	-	carbon-nitrogen hydrolase
3020	 35.92	0	3427878..3428765	+	295	197286935	-	PMI3117	-	LysR-family transcriptional regulator
3021	 39.95	0	3429180..3429980	+	266	197286936	-	PMI3118	-	hypothetical protein
3022	 29.49	-2	3430155..3431507	+	450	197286937	-	PMI3119	-	hypothetical protein
3023	 35.61	0	3431552..3434629	+	1025	197286938	-	PMI3120	-	TonB-dependent receptor
3024	 40.17	0	3434657..3435460	+	267	197286939	-	PMI3121	-	TonB-like protein
3025	 34.81	0	3435514..3437475	-	653	197286940	-	PMI3122	-	hypothetical protein
3026	 38.39	0	3437507..3438436	-	309	197286941	-	PMI3123	-	phosphoesterase
3027	 40.86	0	3438621..3439085	-	154	197286942	-	PMI3124	-	hypothetical protein
3028	 36.30	0	3439488..3440801	-	437	197286943	hipA	PMI3125	-	regulatory protein
3029	 35.27	0	3440802..3441059	-	85	197286944	hipB	PMI3126	-	transcriptional regulator
3030	 45.71	+1	3441208..3442572	-	454	197286945	trmE	PMI3127	-	probable tRNA modification GTPase
3031	 41.01	0	3442710..3444350	-	546	197286946	oxaA	PMI3128	-	inner membrane protein
3032	 44.06	0	3444353..3444613	-	86	197286947	-	PMI3129	-	hypothetical protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.