IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2641	 41.24	0	2977288..2978223	-	311	197286556	-	PMI2727	-	hypothetical protein
2642	 37.79	0	2979093..2979653	+	186	197286557	atfA	PMI2728	-	major subunit of type 1 fimbria
2643	 31.12	-1	2979752..2980429	+	225	197286558	atfB	PMI2729	-	type 1 fimbrial chaperone protein
2644	 38.74	0	2980466..2982997	+	843	197286559	atfC	PMI2730	-	outer membrane usher protein
2645	 41.04	0	2982997..2983515	+	172	197286560	-	PMI2731	-	fimbrial subunit
2646	 40.60	0	2983515..2984588	+	357	197286561	-	PMI2732	-	fimbrial adhesin
2647	 33.02	-1	2984615..2984932	+	105	197286562	-	PMI2733	-	fimbrial operon regulator
2648	 38.70	0	2985066..2986109	-	347	197286563	potD	PMI2734	-	spermidine/putrescine ABC transporter, substrate-binding periplasmic protein
2649	 41.15	0	2986226..2987005	-	259	197286564	potC	PMI2735	-	spermidine/putrescine ABC transporter, permease protein
2650	 37.51	0	2987002..2987862	-	286	197286565	potB	PMI2736	-	spermidine/putrescine ABC transporter, permease protein
2651	 43.55	0	2987846..2988961	-	371	197286566	potA	PMI2737	-	spermidine/putrescine ABC transporter, ATP-binding protein
2652	 35.13	0	2989405..2990742	-	445	197286567	-	PMI2738	-	serine protease
2653	 42.03	0	2991572..2992606	+	344	197286568	dusA	PMI2739	-	tRNA-dihydrouridine synthase A
2654	 43.50	0	2992713..2993696	-	327	197286569	qor	PMI2740	-	quinone oxidoreductase
2655	 43.83	0	2993864..2995273	+	469	197286570	dnaB	PMI2741	-	replicative DNA helicase
2656	 43.32	0	2995314..2996405	+	363	197286571	alr	PMI2742	-	alanine racemase (biosynthetic)
2657	 42.55	0	2996461..2997654	+	397	197286572	tyrB	PMI2743	-	aromatic-amino-acid aminotransferase
2658	 45.11	+1	2997776..2999125	-	449	197286573	-	PMI2744	-	hypothetical protein
2659	 41.22	0	2999187..3000518	-	443	197286574	-	PMI2745	-	hypothetical protein
2660	 43.84	0	3001171..3004005	-	944	197286575	uvrA	PMI2746	-	UvrABC excision repair system proteinA (excinuclease ABC subunit A)
2661	 47.81	+1	3004258..3004782	+	174	197286576	ssb	PMI2747	-	single-strand binding protein
2662	 41.62	0	3005138..3005668	+	176	197286577	zur	PMI2748	-	zinc uptake regulation protein
2663	 43.46	0	3005857..3006468	-	203	197286578	lexA	PMI2749	-	LexA repressor
2664	 40.32	0	3006596..3006967	-	123	197286579	dgkA	PMI2750	-	diacylglycerol kinase
2665	 41.75	0	3007098..3009581	+	827	197286580	plsB	PMI2751	-	glycerol-3-phosphate acyltransferase
2666	 37.66	0	3009695..3010549	-	284	197286581	ubiA	PMI2752	-	4-hydroxybenzoate octaprenyltransferase
2667	 40.39	0	3010578..3011087	-	169	197286582	ubiC	PMI2753	-	chorismate--pyruvate lyase
2668	 39.47	0	3011309..3012955	-	548	197286583	pgi	PMI2754	-	glucose-6-phosphate isomerase
2669	 41.21	0	3013220..3014590	+	456	197286584	lysC	PMI2755	-	lysine-sensitive aspartokinase III
2670	 22.08	-2	3014817..3015500	+	227	197286585	-	PMI2756	-	hypothetical protein
2671	 35.73	0	3015585..3016169	-	194	197286586	-	PMI2757	-	hypothetical protein
2672	 42.73	0	3016297..3019968	-	1223	197286587	metH	PMI2758	-	methionine synthase (5-methyltetrahydrofolate--homocysteine methyltransferase)
2673	 42.29	0	3020232..3021068	+	278	197286588	iclR	PMI2759	-	acetate operon repressor
2674	 42.49	0	3021374..3023230	+	618	197286589	edd	PMI2760	-	6-phosphogluconate dehydratase
2675	 43.93	0	3023309..3023950	+	213	197286590	eda	PMI2761	-	KHG/KDPG aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase and 2-dehydro-3-deoxy-phosphogluconate aldolase]
2676	 37.81	0	3024023..3025741	-	572	197286591	aceK	PMI2762	-	isocitrate dehydrogenase kinase/phosphatase
2677	 43.50	0	3025813..3027120	-	435	197286592	aceA	PMI2763	-	isocitrate lyase
2678	 39.80	0	3027196..3028788	-	530	197286593	aceB	PMI2764	-	malate synthase A
2679	 36.24	0	3029131..3030060	+	309	197286594	metA	PMI2765	-	homoserine O-succinyltransferase
2680	 37.50	0	3030118..3031221	-	367	197286595	-	PMI2766	-	glycerol dehydrogenase
2681	 37.73	0	3031581..3032126	+	181	197286596	-	PMI2767	-	isopentenyl-diphosphate delta-isomerase
2682	 41.32	0	3038234..3039823	+	529	197286597	purH	PMI2768	-	bifunctional purine biosynthesis protein [includes: phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclohydrolase]
2683	 44.34	0	3039836..3041125	+	429	197286598	purD	PMI2769	-	phosphoribosylamine--glycine ligase
2684	 42.14	0	3041149..3041841	-	230	197286599	-	PMI2770	-	lipoprotein
2685	 42.12	0	3041856..3042128	-	90	197286600	hupA	PMI2771	-	DNA-binding protein HU-alpha (HU-2)
2686	 39.26	0	3042319..3042909	-	196	197286601	-	PMI2772	-	hypothetical protein
2687	 40.51	0	3042984..3043652	-	222	197286602	nfi	PMI2773	-	endonuclease V
2688	 42.74	0	3043645..3044718	-	357	197286603	hemE	PMI2774	-	uroporphyrinogen decarboxylase
2689	 40.33	0	3044807..3045592	-	261	197286604	nudC	PMI2775	-	NADH pyrophosphatase
2690	 33.92	-1	3045740..3046420	+	226	197286605	-	PMI2776	-	hydrolase
2691	 42.81	0	3046719..3048671	+	650	197286606	thiC	PMI2777	-	thiamine biosynthesis protein
2692	 39.51	0	3048655..3049302	+	215	197286607	thiE	PMI2778	-	thiamine-phosphate pyrophosphorylase
2693	 40.67	0	3049296..3050045	+	249	197286608	thiF	PMI2779	-	thiamine biosynthesis adenylyltransferase
2694	 42.79	0	3050042..3050242	+	66	197286609	thiS	PMI2780	-	thiamine biosynthesis protein
2695	 41.41	0	3050244..3051023	+	259	197286610	thiG	PMI2781	-	thiazole biosynthesis
2696	 39.59	0	3051023..3052141	+	372	197286611	thiH	PMI2782	-	thiazole biosynthesis protein
2697	 31.37	-1	3052300..3053268	-	322	197286612	-	PMI2783	-	transposase/plasmid-related protein
2698	 44.18	0	3053462..3057691	-	1409	197286613	rpoC	PMI2784	-	DNA-directed RNA polymerase beta' subunit
2699	 42.69	0	3057814..3061842	-	1342	197286614	rpoB	PMI2785	-	DNA-directed RNA polymerase, beta-subunit
2700	 43.99	0	3062195..3062560	-	121	197286615	rplL	PMI2786	-	50S ribosomal subunit protein L7/L12
2701	 48.39	+1	3062624..3063121	-	165	197286616	rplJ	PMI2787	-	50S ribosomal subunit protein L10
2702	 43.02	0	3063449..3064150	-	233	197286617	rplA	PMI2788	-	50S ribosomal protein L1
2703	 44.76	+1	3064155..3064583	-	142	197286618	rplK	PMI2789	-	50S ribosomal protein L11
2704	 42.49	0	3064729..3065274	-	181	197286619	nusG	PMI2790	-	transcription antitermination protein
2705	 47.35	+1	3065282..3065659	-	125	197286620	secE	PMI2791	-	preprotein translocase SecE subunit
2706	 45.32	+1	3065932..3067116	-	394	197286621	tufB	PMI2792	-	elongation factor Tu
2707	 44.26	0	3067184..3069298	-	704	197286622	fusA	PMI2793	-	elongation factor G (EF-G)
2708	 45.65	+1	3069378..3069848	-	156	197286623	rpsG	PMI2794	-	30S ribosomal subunit protein S7
2709	 48.00	+1	3069948..3070322	-	124	197286624	rpsl	PMI2795	-	30S ribosomal protein S12
2710	 36.05	0	3070450..3070743	-	97	197286625	-	PMI2796	-	intracellular sulfur oxidation protein
2711	 40.28	0	3070774..3071133	-	119	197286626	-	PMI2797	-	intracellular sulfur oxidation protein
2712	 44.27	0	3071142..3071534	-	130	197286627	-	PMI2798	-	intracellular sulfur oxidation protein
2713	 36.45	0	3071544..3072248	-	234	197286628	-	PMI2799	-	hypothetical protein
2714	 38.10	0	3072867..3073748	+	293	197286629	-	PMI2800	-	hypothetical protein
2715	 37.33	0	3073801..3074550	-	249	197286630	fkpA	PMI2801	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2716	 38.81	0	3074887..3075105	+	72	197286631	slyX	PMI2802	-	hypothetical protein
2717	 46.57	+1	3075177..3075818	-	213	197286632	slyD	PMI2803	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2718	 46.57	+1	3075908..3076111	-	67	197286633	-	PMI2804	-	hypothetical protein
2719	 42.10	0	3076116..3077963	-	615	197286634	kefB	PMI2805	-	glutathione-regulated potassium-efflux system protein
2720	 41.89	0	3077968..3078528	-	186	197286635	kefG	PMI2806	-	glutathione-regulated potassium-efflux system ancillary protein
2721	 41.51	0	3078650..3080581	+	643	197286636	-	PMI2807	-	ABC transporter ATP-binding protein
2722	 40.19	0	3080908..3082599	+	563	197286637	-	PMI2808	-	methyl-accepting chemotaxis protein
2723	 38.77	0	3083055..3084782	+	575	197286638	-	PMI2809	-	methyl-accepting chemotaxis protein
2724	 30.96	-1	3085012..3085728	+	238	197286639	-	PMI2810	-	hypothetical protein
2725	 21.69	-2	3085736..3086173	+	145	197286640	-	PMI2811	-	hypothetical protein
2726	 33.54	-1	3086170..3086649	-	159	197286641	-	PMI2812	-	hypothetical protein
2727	 39.74	0	3086884..3088428	-	514	197286642	aer	PMI2813	-	aerotaxis receptor
2728	 36.70	0	3088577..3089437	-	286	197286643	-	PMI2814	-	RpiR-family transcriptional regulator
2729	 38.28	0	3090150..3090755	-	201	197286644	-	PMI2815	-	LysE-type translocator
2730	 41.18	0	3090855..3091835	+	326	197286645	-	PMI2816	-	hydrolase
2731	 44.14	0	3091832..3092053	+	73	197286646	-	PMI2817	-	hypothetical protein
2732	 40.69	0	3092127..3092996	+	289	197286647	prkB	PMI2818	-	probable phosphoribulokinase
2733	 37.99	0	3093085..3093492	-	135	197286648	-	PMI2819	-	OsmC-like protein
2734	 39.49	0	3093805..3094437	+	210	197286649	crp	PMI2820	-	catabolite gene activator (cAMP receptor protein)
2735	 43.10	0	3094525..3095742	-	405	197286650	argD	PMI2821	-	acetylornithine/succinyldiaminopimelate aminotransferase
2736	 41.84	0	3095860..3096435	-	191	197286651	pabA	PMI2822	-	para-aminobenzoate synthase glutamine amidotransferase component II
2737	 40.66	0	3096808..3097380	-	190	197286652	ppiA	PMI2823	-	peptidyl-prolyl cis-trans isomerase A
2738	 39.90	0	3097655..3098278	+	207	197286653	engB	PMI2824	-	probable GTP-binding protein
2739	 39.11	0	3098737..3099255	+	172	197286654	def	PMI2825	-	peptide deformylase
2740	 41.41	0	3099477..3102275	-	932	197286655	polA	PMI2826	-	DNA polymerase I
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.